Wall clock time and date at job start Mon Mar 30 2020 01:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47108 * 2 1 4 4 C 1.53002 * 109.47292 * 239.99580 * 2 1 3 5 5 N 1.46499 * 109.47320 * 184.99635 * 4 2 1 6 6 C 1.34779 * 120.00102 * 180.02562 * 5 4 2 7 7 O 1.21619 * 119.99421 * 0.02562 * 6 5 4 8 8 C 1.47173 * 119.99800 * 180.02562 * 6 5 4 9 9 C 1.38244 * 128.47237 * 180.02562 * 8 6 5 10 10 N 1.31240 * 111.88871 * 179.73957 * 9 8 6 11 11 N 1.27332 * 120.03870 * 0.24056 * 10 9 8 12 12 S 1.56648 * 109.74021 * 0.02562 * 11 10 9 13 13 N 1.46504 * 109.47126 * 119.99519 * 2 1 3 14 14 C 1.46498 * 120.00054 * 60.00544 * 13 2 1 15 15 C 1.36932 * 119.99879 * 239.99724 * 13 2 1 16 16 H 1.08003 * 120.00453 * 21.95123 * 15 13 2 17 17 C 1.38820 * 119.99919 * 201.94344 * 15 13 2 18 18 N 1.31620 * 119.99803 * 12.69379 * 17 15 13 19 19 Si 1.86801 * 119.99940 * 192.69326 * 17 15 13 20 20 H 1.48495 * 109.47370 * 90.00221 * 19 17 15 21 21 H 1.48503 * 109.47049 * 210.00313 * 19 17 15 22 22 H 1.48505 * 109.47293 * 329.99727 * 19 17 15 23 23 H 1.09000 * 109.46634 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46882 * 300.00217 * 1 2 3 25 25 H 1.09001 * 109.47224 * 60.00283 * 1 2 3 26 26 H 1.09009 * 109.46731 * 64.99854 * 4 2 1 27 27 H 1.08994 * 109.47501 * 305.00117 * 4 2 1 28 28 H 0.97006 * 119.99782 * 0.02562 * 5 4 2 29 29 H 1.08006 * 124.05271 * 0.02562 * 9 8 6 30 30 H 1.09005 * 109.47464 * 94.30617 * 14 13 2 31 31 H 1.08991 * 109.47036 * 214.31033 * 14 13 2 32 32 H 1.09001 * 109.46581 * 334.31015 * 14 13 2 33 33 H 0.97000 * 119.99891 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.1732 -1.4283 -2.1911 7 8 3.5684 -1.8839 -3.1429 8 6 5.6399 -1.5343 -2.1319 9 6 6.4984 -2.1090 -3.0505 10 7 7.7519 -2.0173 -2.6726 11 7 8.0455 -1.4520 -1.5700 12 16 6.7374 -0.9583 -0.8637 13 7 2.0183 -0.6905 1.1963 14 6 1.6645 -2.0931 1.4282 15 6 2.8056 -0.0250 2.0975 16 1 2.7847 1.0540 2.1395 17 6 3.6306 -0.7372 2.9574 18 7 3.8496 -2.0181 2.7487 19 14 4.4297 0.1225 4.4106 20 1 3.5355 0.0313 5.5926 21 1 5.7271 -0.5306 4.7198 22 1 4.6621 1.5503 4.0745 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.7516 -0.1584 -2.1370 27 1 1.6055 -1.7198 -1.2951 28 1 3.9824 -0.4627 -0.4316 29 1 6.1766 -2.5734 -3.9710 30 1 2.4540 -2.7362 1.0390 31 1 1.5489 -2.2665 2.4980 32 1 0.7274 -2.3202 0.9198 33 1 4.4263 -2.5157 3.3493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755292857.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:36 Heat of formation + Delta-G solvation = 60.112686 kcal Electronic energy + Delta-G solvation = -18801.280404 eV Core-core repulsion = 15797.825449 eV Total energy + Delta-G solvation = -3003.454954 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65154 -39.19617 -36.81646 -33.88139 -32.35735 -31.75028 -29.44272 -27.70959 -26.12996 -25.64486 -23.26034 -22.33486 -20.28849 -19.44236 -18.94844 -17.13116 -16.99677 -15.78445 -15.75604 -15.31529 -14.71960 -14.51494 -13.98935 -13.89384 -12.93906 -12.85492 -12.54994 -12.35144 -12.21563 -11.77640 -11.69858 -11.17848 -10.89580 -10.79576 -10.49697 -10.38917 -10.14750 -9.96615 -9.95418 -9.89923 -9.85621 -9.67056 -8.70187 -8.63527 -6.93899 -5.86104 -3.33982 -0.09770 1.00221 1.65624 2.10091 3.22999 3.28695 3.36197 3.38031 3.41379 4.15726 4.35994 4.84208 5.05672 5.26237 5.28263 5.47203 5.65508 5.82913 5.97443 6.02822 6.20705 6.29110 6.58843 6.69655 6.75229 6.87824 7.30933 7.62628 7.69667 7.71193 7.86855 8.24079 8.40611 9.09122 9.71783 10.20965 11.16750 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.008034 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.629737 B = 3484.320716 C = 4891.821180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.070 0.930 4 C 0.106 3.894 5 N -0.688 5.688 6 C 0.595 3.405 7 O -0.539 6.539 8 C -0.280 4.280 9 C 0.062 3.938 10 N -0.261 5.261 11 N -0.275 5.275 12 S 0.461 5.539 13 N -0.595 5.595 14 C 0.162 3.838 15 C -0.265 4.265 16 H 0.069 0.931 17 C 0.008 3.992 18 N -0.901 5.901 19 Si 0.898 3.102 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.278 1.278 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.415 0.585 29 H 0.212 0.788 30 H 0.028 0.972 31 H 0.043 0.957 32 H -0.001 1.001 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 3.030 -6.967 7.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.089 0.911 4 C -0.020 4.020 5 N -0.339 5.339 6 C 0.377 3.623 7 O -0.418 6.418 8 C -0.422 4.422 9 C -0.106 4.106 10 N -0.124 5.124 11 N -0.257 5.257 12 S 0.595 5.405 13 N -0.318 5.318 14 C 0.018 3.982 15 C -0.394 4.394 16 H 0.087 0.913 17 C -0.192 4.192 18 N -0.545 5.545 19 Si 0.728 3.272 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.204 1.204 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.252 0.748 29 H 0.228 0.772 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.018 0.982 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.421 3.044 -6.387 7.217 hybrid contribution -0.314 -0.116 0.275 0.433 sum 1.107 2.928 -6.113 6.868 Atomic orbital electron populations 1.22165 0.97205 1.01575 1.00803 1.20673 0.92844 0.95943 0.85758 0.91134 1.22092 0.78681 1.01610 0.99582 1.45777 1.08894 1.57043 1.22155 1.16488 0.83244 0.79107 0.83438 1.90786 1.68211 1.49002 1.33830 1.28180 1.01410 1.11216 1.01366 1.24380 0.85787 0.98789 1.01650 1.70687 1.18970 1.15186 1.07594 1.78707 1.23977 1.16104 1.06902 1.83186 0.93750 1.41701 1.21830 1.43975 1.57890 1.09722 1.20227 1.20772 0.94002 0.84352 0.99110 1.19241 1.16864 0.91040 1.12239 0.91294 1.24978 0.97940 0.96078 1.00155 1.70075 1.39424 1.07309 1.37701 0.86357 0.78656 0.78913 0.83234 1.21518 1.21652 1.20375 0.92868 0.92296 0.93464 0.92194 0.91786 0.74774 0.77150 0.95329 0.93806 0.98232 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.18 37.16 0.34 -2.04 16 2 C 0.16 2.74 2.87 -67.93 -0.19 2.54 16 3 H 0.07 1.21 7.86 -51.93 -0.41 0.80 16 4 C 0.11 1.79 4.97 -4.04 -0.02 1.77 16 5 N -0.69 -12.15 5.38 -61.46 -0.33 -12.48 16 6 C 0.59 10.47 7.80 -12.63 -0.10 10.37 16 7 O -0.54 -10.53 16.98 5.26 0.09 -10.45 16 8 C -0.28 -4.41 6.81 -35.95 -0.24 -4.65 16 9 C 0.06 0.89 11.55 -17.80 -0.21 0.68 16 10 N -0.26 -4.09 11.54 30.36 0.35 -3.74 16 11 N -0.28 -4.41 12.51 60.35 0.75 -3.66 16 12 S 0.46 6.92 23.05 -107.50 -2.48 4.45 16 13 N -0.60 -12.79 2.29 -173.48 -0.40 -13.19 16 14 C 0.16 3.63 8.10 59.85 0.49 4.11 16 15 C -0.26 -6.27 9.33 -15.06 -0.14 -6.41 16 16 H 0.07 1.61 7.81 -52.48 -0.41 1.20 16 17 C 0.01 0.19 5.10 -17.43 -0.09 0.10 16 18 N -0.90 -23.35 10.63 55.49 0.59 -22.76 16 19 Si 0.90 19.89 29.57 -169.99 -5.03 14.86 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H 0.05 0.82 6.66 -51.93 -0.35 0.47 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 27 H 0.06 1.16 7.84 -51.93 -0.41 0.75 16 28 H 0.41 7.64 7.32 -40.82 -0.30 7.34 16 29 H 0.21 2.46 8.06 -52.48 -0.42 2.03 16 30 H 0.03 0.70 7.42 -51.93 -0.39 0.32 16 31 H 0.04 1.08 7.20 -51.93 -0.37 0.70 16 32 H 0.00 -0.02 6.43 -51.93 -0.33 -0.35 16 33 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 298.34 15.07 4.50 4.50 Total: -1.00 -27.38 298.34 -5.91 -33.28 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.79 Total: 2.71 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -0.17 Total: 6.47 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.97 Total: -55.83 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Atomic # 16 Polarization: 6.92 SS G_CDS: -2.48 Total: 4.45 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.38 -5.91 -33.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755292857.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.398 kcal (2) G-P(sol) polarization free energy of solvation -27.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds