Wall clock time and date at job start Mon Mar 30 2020 01:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47108 * 2 1 4 4 C 1.53002 * 109.47292 * 239.99580 * 2 1 3 5 5 N 1.46499 * 109.47320 * 184.99635 * 4 2 1 6 6 C 1.34779 * 120.00102 * 180.02562 * 5 4 2 7 7 O 1.21619 * 119.99421 * 0.02562 * 6 5 4 8 8 C 1.47173 * 119.99800 * 180.02562 * 6 5 4 9 9 C 1.38244 * 128.47237 * 180.02562 * 8 6 5 10 10 N 1.31240 * 111.88871 * 179.73957 * 9 8 6 11 11 N 1.27332 * 120.03870 * 0.24056 * 10 9 8 12 12 S 1.56648 * 109.74021 * 0.02562 * 11 10 9 13 13 N 1.46504 * 109.47126 * 119.99519 * 2 1 3 14 14 C 1.46498 * 120.00054 * 60.00544 * 13 2 1 15 15 C 1.36932 * 119.99879 * 239.99724 * 13 2 1 16 16 H 1.08003 * 120.00453 * 21.95123 * 15 13 2 17 17 C 1.38820 * 119.99919 * 201.94344 * 15 13 2 18 18 N 1.31620 * 119.99803 * 12.69379 * 17 15 13 19 19 Si 1.86801 * 119.99940 * 192.69326 * 17 15 13 20 20 H 1.48495 * 109.47370 * 90.00221 * 19 17 15 21 21 H 1.48503 * 109.47049 * 210.00313 * 19 17 15 22 22 H 1.48505 * 109.47293 * 329.99727 * 19 17 15 23 23 H 1.09000 * 109.46634 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46882 * 300.00217 * 1 2 3 25 25 H 1.09001 * 109.47224 * 60.00283 * 1 2 3 26 26 H 1.09009 * 109.46731 * 64.99854 * 4 2 1 27 27 H 1.08994 * 109.47501 * 305.00117 * 4 2 1 28 28 H 0.97006 * 119.99782 * 0.02562 * 5 4 2 29 29 H 1.08006 * 124.05271 * 0.02562 * 9 8 6 30 30 H 1.09005 * 109.47464 * 94.30617 * 14 13 2 31 31 H 1.08991 * 109.47036 * 214.31033 * 14 13 2 32 32 H 1.09001 * 109.46581 * 334.31015 * 14 13 2 33 33 H 0.97000 * 119.99891 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.1732 -1.4283 -2.1911 7 8 3.5684 -1.8839 -3.1429 8 6 5.6399 -1.5343 -2.1319 9 6 6.4984 -2.1090 -3.0505 10 7 7.7519 -2.0173 -2.6726 11 7 8.0455 -1.4520 -1.5700 12 16 6.7374 -0.9583 -0.8637 13 7 2.0183 -0.6905 1.1963 14 6 1.6645 -2.0931 1.4282 15 6 2.8056 -0.0250 2.0975 16 1 2.7847 1.0540 2.1395 17 6 3.6306 -0.7372 2.9574 18 7 3.8496 -2.0181 2.7487 19 14 4.4297 0.1225 4.4106 20 1 3.5355 0.0313 5.5926 21 1 5.7271 -0.5306 4.7198 22 1 4.6621 1.5503 4.0745 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.7516 -0.1584 -2.1370 27 1 1.6055 -1.7198 -1.2951 28 1 3.9824 -0.4627 -0.4316 29 1 6.1766 -2.5734 -3.9710 30 1 2.4540 -2.7362 1.0390 31 1 1.5489 -2.2665 2.4980 32 1 0.7274 -2.3202 0.9198 33 1 4.4263 -2.5157 3.3493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755292857.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:36 Heat of formation + Delta-G solvation = 42.192434 kcal Electronic energy + Delta-G solvation = -18802.057484 eV Core-core repulsion = 15797.825449 eV Total energy + Delta-G solvation = -3004.232035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.88040 -40.59370 -38.37241 -35.44788 -33.89703 -33.06578 -31.08357 -28.97439 -27.95634 -26.93667 -24.93028 -23.64944 -21.62257 -20.91595 -20.19361 -18.80459 -18.42646 -17.18024 -17.10487 -16.89185 -16.15956 -15.85373 -15.55936 -15.28629 -14.62915 -14.42612 -13.86054 -13.80786 -13.60061 -13.17918 -12.99723 -12.78745 -12.57378 -12.44100 -12.23111 -12.04126 -11.69620 -11.44746 -11.44337 -11.20136 -11.16960 -10.91488 -10.56410 -10.04441 -8.74016 -7.73270 -5.21071 -1.33980 -0.20852 0.43430 0.88981 1.51724 1.56975 1.61655 1.87839 2.08186 2.56462 2.97961 3.40800 3.64384 3.66961 3.76303 4.08580 4.42749 4.58008 4.65451 4.74617 4.85711 4.89854 5.13815 5.30444 5.36104 5.39758 5.60570 5.75076 5.80941 6.39089 6.40732 6.55965 7.00229 7.23269 7.94417 8.39456 9.27801 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.008034 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.629737 B = 3484.320716 C = 4891.821180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.154 3.846 3 H 0.078 0.922 4 C 0.110 3.890 5 N -0.692 5.692 6 C 0.598 3.402 7 O -0.560 6.560 8 C -0.297 4.297 9 C 0.076 3.924 10 N -0.272 5.272 11 N -0.287 5.287 12 S 0.480 5.520 13 N -0.603 5.603 14 C 0.180 3.820 15 C -0.257 4.257 16 H 0.076 0.924 17 C -0.036 4.036 18 N -0.927 5.927 19 Si 0.947 3.053 20 H -0.298 1.298 21 H -0.300 1.300 22 H -0.265 1.265 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.411 0.589 29 H 0.238 0.762 30 H 0.001 0.999 31 H 0.013 0.987 32 H 0.024 0.976 33 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.309 4.123 -7.846 8.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.047 3.953 3 H 0.096 0.904 4 C -0.015 4.015 5 N -0.341 5.341 6 C 0.381 3.619 7 O -0.441 6.441 8 C -0.438 4.438 9 C -0.092 4.092 10 N -0.135 5.135 11 N -0.269 5.269 12 S 0.615 5.385 13 N -0.327 5.327 14 C 0.035 3.965 15 C -0.387 4.387 16 H 0.093 0.907 17 C -0.233 4.233 18 N -0.573 5.573 19 Si 0.777 3.223 20 H -0.226 1.226 21 H -0.227 1.227 22 H -0.189 1.189 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.247 0.753 29 H 0.254 0.746 30 H 0.020 0.980 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.910 4.174 -7.283 8.444 hybrid contribution -0.204 -0.423 0.514 0.696 sum 0.706 3.752 -6.769 7.771 Atomic orbital electron populations 1.22059 0.94918 1.01740 1.02125 1.20885 0.94390 0.95763 0.84256 0.90409 1.22068 0.78256 1.01105 1.00055 1.45852 1.09265 1.57025 1.21987 1.16597 0.83827 0.78479 0.82960 1.90769 1.68887 1.49928 1.34534 1.28054 1.00748 1.12712 1.02320 1.24782 0.84992 0.97457 1.01934 1.70722 1.19542 1.15605 1.07625 1.78655 1.24593 1.16375 1.07250 1.83119 0.93173 1.40963 1.21247 1.44103 1.57669 1.09359 1.21524 1.20439 0.94161 0.84741 0.97179 1.19511 1.15817 0.91390 1.12002 0.90660 1.25491 0.99115 0.96529 1.02133 1.70215 1.40470 1.08353 1.38256 0.85570 0.77180 0.78771 0.80739 1.22615 1.22687 1.18936 0.93259 0.92837 0.90298 0.89940 0.93038 0.75253 0.74606 0.98020 0.96771 0.95790 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.18 71.98 0.66 -3.41 16 2 C 0.15 5.05 2.87 44.99 0.13 5.17 16 3 H 0.08 2.45 7.86 -2.38 -0.02 2.43 16 4 C 0.11 3.51 4.97 86.38 0.43 3.94 16 5 N -0.69 -23.59 5.38 -466.62 -2.51 -26.11 16 6 C 0.60 20.35 7.80 86.59 0.68 21.03 16 7 O -0.56 -21.14 16.98 -4.09 -0.07 -21.21 16 8 C -0.30 -9.00 6.81 24.62 0.17 -8.83 16 9 C 0.08 2.07 11.55 84.78 0.98 3.05 16 10 N -0.27 -8.17 11.54 -57.86 -0.67 -8.84 16 11 N -0.29 -8.91 12.51 37.02 0.46 -8.45 16 12 S 0.48 14.03 23.05 -56.49 -1.30 12.73 16 13 N -0.60 -25.29 2.29 -702.76 -1.61 -26.89 16 14 C 0.18 8.03 8.10 127.77 1.04 9.06 16 15 C -0.26 -11.92 9.33 84.04 0.78 -11.14 16 16 H 0.08 3.37 7.81 -2.91 -0.02 3.35 16 17 C -0.04 -1.79 5.10 84.86 0.43 -1.35 16 18 N -0.93 -48.66 10.63 21.65 0.23 -48.43 16 19 Si 0.95 40.70 29.57 68.60 2.03 42.73 16 20 H -0.30 -13.22 7.11 99.48 0.71 -12.52 16 21 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 H 0.05 1.38 6.66 -2.39 -0.02 1.37 16 24 H 0.05 1.52 8.14 -2.38 -0.02 1.51 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.05 1.78 7.84 -2.39 -0.02 1.77 16 28 H 0.41 14.74 7.32 -92.70 -0.68 14.07 16 29 H 0.24 4.98 8.06 -2.91 -0.02 4.95 16 30 H 0.00 0.07 7.42 -2.38 -0.02 0.06 16 31 H 0.01 0.68 7.20 -2.39 -0.02 0.67 16 32 H 0.02 0.93 6.43 -2.39 -0.02 0.91 16 33 H 0.24 12.89 8.31 -92.71 -0.77 12.12 16 Total: -1.00 -57.19 298.34 2.32 -54.87 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.46 Total: 12.07 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 5.29 Total: 17.53 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -4.09 Total: -118.71 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.07 Total: -21.21 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 14.03 SS G_CDS: -1.30 Total: 12.73 kcal Total: -57.19 2.32 -54.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755292857.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.060 kcal (2) G-P(sol) polarization free energy of solvation -57.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds