Wall clock time and date at job start Mon Mar 30 2020 01:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47422 * 2 1 4 4 C 1.53005 * 109.46903 * 120.00199 * 2 1 3 5 5 N 1.46503 * 109.46790 * 174.99803 * 4 2 1 6 6 C 1.34777 * 119.99659 * 179.97438 * 5 4 2 7 7 O 1.21620 * 119.99896 * 0.02562 * 6 5 4 8 8 C 1.47172 * 119.99841 * 180.02562 * 6 5 4 9 9 C 1.38241 * 128.47368 * 180.02562 * 8 6 5 10 10 N 1.31246 * 111.88717 * 179.97438 * 9 8 6 11 11 N 1.27329 * 120.03988 * 359.97438 * 10 9 8 12 12 S 1.56644 * 109.73785 * 359.69566 * 11 10 9 13 13 N 1.46494 * 109.47052 * 240.00204 * 2 1 3 14 14 C 1.46509 * 120.00107 * 299.99956 * 13 2 1 15 15 C 1.36936 * 120.00474 * 120.00305 * 13 2 1 16 16 H 1.08005 * 119.99913 * 22.81508 * 15 13 2 17 17 C 1.38809 * 120.00318 * 202.82036 * 15 13 2 18 18 N 1.31616 * 120.00223 * 11.58806 * 17 15 13 19 19 Si 1.86798 * 120.00150 * 191.58247 * 17 15 13 20 20 H 1.48509 * 109.47031 * 60.00063 * 19 17 15 21 21 H 1.48499 * 109.47449 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47418 * 300.00444 * 19 17 15 23 23 H 1.09001 * 109.47168 * 300.00336 * 1 2 3 24 24 H 1.09000 * 109.47152 * 59.99692 * 1 2 3 25 25 H 1.09001 * 109.47422 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47083 * 294.99377 * 4 2 1 27 27 H 1.09001 * 109.47086 * 55.00091 * 4 2 1 28 28 H 0.96995 * 120.00392 * 0.02562 * 5 4 2 29 29 H 1.07998 * 124.06238 * 0.02562 * 9 8 6 30 30 H 1.08997 * 109.46770 * 93.85015 * 14 13 2 31 31 H 1.08997 * 109.47252 * 213.85703 * 14 13 2 32 32 H 1.08996 * 109.46765 * 333.85369 * 14 13 2 33 33 H 0.96993 * 120.00416 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1905 6 6 4.1730 -1.4284 2.1912 7 8 3.5682 -1.8847 3.1425 8 6 5.6398 -1.5336 2.1325 9 6 6.4982 -2.1090 3.0507 10 7 7.7514 -2.0214 2.6705 11 7 8.0451 -1.4554 1.5684 12 16 6.7370 -0.9617 0.8622 13 7 2.0183 -0.6905 -1.1961 14 6 1.6643 -2.0932 -1.4281 15 6 2.8056 -0.0251 -2.0975 16 1 3.3666 0.8438 -1.7865 17 6 2.8826 -0.4672 -3.4111 18 7 2.0366 -1.3745 -3.8508 19 14 4.1869 0.2256 -4.5548 20 1 5.5344 -0.0610 -4.0002 21 1 4.0575 -0.4051 -5.8930 22 1 4.0056 1.6941 -4.6806 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.7517 -0.1584 2.1370 27 1 1.6053 -1.7199 1.2951 28 1 3.9824 -0.4623 0.4320 29 1 6.1764 -2.5753 3.9700 30 1 0.7756 -2.1444 -2.0570 31 1 2.4915 -2.5991 -1.9259 32 1 1.4626 -2.5795 -0.4737 33 1 2.0902 -1.6832 -4.7687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755292858.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:39 Heat of formation + Delta-G solvation = 41.422166 kcal Electronic energy + Delta-G solvation = -18615.599695 eV Core-core repulsion = 15611.334259 eV Total energy + Delta-G solvation = -3004.265436 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.89759 -40.63005 -38.38843 -35.50361 -33.88425 -33.06526 -31.13678 -28.99408 -27.98085 -26.95589 -24.95303 -23.67852 -21.65820 -20.93597 -20.21089 -18.85755 -18.41074 -17.22583 -17.13164 -16.89277 -16.12474 -15.91717 -15.57494 -15.34420 -14.59684 -14.50400 -13.94153 -13.80684 -13.55718 -13.04024 -12.99123 -12.81729 -12.59111 -12.47112 -12.29134 -12.07648 -11.76114 -11.48772 -11.46339 -11.21181 -11.18107 -10.93318 -10.56720 -10.08322 -8.74631 -7.75845 -5.24069 -1.35460 -0.22967 0.41894 0.88562 1.53884 1.54955 1.60194 1.87301 2.01635 2.55944 2.97101 3.40269 3.62305 3.65478 3.74332 4.06238 4.38955 4.58342 4.63334 4.74141 4.79889 4.95763 5.08912 5.27216 5.30025 5.44861 5.53550 5.72754 5.80203 6.36741 6.38806 6.55437 6.97580 7.21661 7.92642 8.38059 9.27639 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.016429 B = 0.007043 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.916376 B = 3974.565936 C = 5319.619008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.154 3.846 3 H 0.079 0.921 4 C 0.114 3.886 5 N -0.695 5.695 6 C 0.599 3.401 7 O -0.557 6.557 8 C -0.297 4.297 9 C 0.078 3.922 10 N -0.272 5.272 11 N -0.285 5.285 12 S 0.480 5.520 13 N -0.604 5.604 14 C 0.183 3.817 15 C -0.257 4.257 16 H 0.085 0.915 17 C -0.049 4.049 18 N -0.939 5.939 19 Si 0.954 3.046 20 H -0.269 1.269 21 H -0.307 1.307 22 H -0.277 1.277 23 H 0.078 0.922 24 H 0.040 0.960 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.410 0.590 29 H 0.236 0.764 30 H -0.001 1.001 31 H 0.016 0.984 32 H 0.020 0.980 33 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 2.561 10.735 11.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.047 3.953 3 H 0.097 0.903 4 C -0.011 4.011 5 N -0.345 5.345 6 C 0.383 3.617 7 O -0.437 6.437 8 C -0.438 4.438 9 C -0.090 4.090 10 N -0.136 5.136 11 N -0.266 5.266 12 S 0.615 5.385 13 N -0.327 5.327 14 C 0.038 3.962 15 C -0.387 4.387 16 H 0.103 0.897 17 C -0.244 4.244 18 N -0.586 5.586 19 Si 0.783 3.217 20 H -0.194 1.194 21 H -0.234 1.234 22 H -0.203 1.203 23 H 0.097 0.903 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.247 0.753 29 H 0.253 0.747 30 H 0.017 0.983 31 H 0.034 0.966 32 H 0.039 0.961 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.788 2.629 10.115 11.947 hybrid contribution -0.408 -0.331 -0.525 0.743 sum 5.380 2.299 9.590 11.234 Atomic orbital electron populations 1.22067 0.95973 1.01326 1.01454 1.20831 0.93705 0.95749 0.85050 0.90294 1.21971 0.78223 1.01365 0.99562 1.45838 1.09091 1.57390 1.22212 1.16586 0.83797 0.78433 0.82863 1.90797 1.68882 1.49650 1.34401 1.28024 1.00553 1.12711 1.02516 1.24784 0.84975 0.97289 1.01915 1.70741 1.19614 1.15543 1.07654 1.78684 1.24532 1.16098 1.07332 1.82922 0.93197 1.41126 1.21295 1.44155 1.58333 1.07922 1.22296 1.20394 0.97470 0.84129 0.94205 1.19583 1.18620 1.11055 0.89432 0.89724 1.25707 1.00243 1.00114 0.98317 1.70224 1.37972 1.34864 1.15508 0.85536 0.80223 0.77978 0.77941 1.19420 1.23404 1.20280 0.90313 0.94115 0.93729 0.89584 0.92490 0.75331 0.74746 0.98284 0.96562 0.96120 0.94662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 9.19 71.98 0.66 -3.88 16 2 C 0.15 5.08 2.87 44.99 0.13 5.21 16 3 H 0.08 2.50 7.86 -2.39 -0.02 2.48 16 4 C 0.11 3.35 4.93 86.38 0.43 3.78 16 5 N -0.70 -20.45 5.38 -466.62 -2.51 -22.96 16 6 C 0.60 17.62 7.80 86.59 0.68 18.30 16 7 O -0.56 -18.95 16.98 -4.09 -0.07 -19.02 16 8 C -0.30 -7.52 6.81 24.62 0.17 -7.35 16 9 C 0.08 1.81 11.55 84.78 0.98 2.79 16 10 N -0.27 -7.16 11.54 -57.87 -0.67 -7.83 16 11 N -0.29 -7.61 12.51 37.02 0.46 -7.15 16 12 S 0.48 11.31 23.05 -56.49 -1.30 10.01 16 13 N -0.60 -25.65 2.29 -702.78 -1.61 -27.25 16 14 C 0.18 8.31 8.00 127.77 1.02 9.34 16 15 C -0.26 -12.03 9.33 84.03 0.78 -11.24 16 16 H 0.09 3.65 7.82 -2.91 -0.02 3.62 16 17 C -0.05 -2.46 5.12 84.86 0.43 -2.03 16 18 N -0.94 -52.20 10.63 21.65 0.23 -51.97 16 19 Si 0.95 41.05 29.57 68.60 2.03 43.07 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 21 H -0.31 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 23 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.04 1.41 7.67 -2.39 -0.02 1.39 16 26 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.06 1.82 6.86 -2.39 -0.02 1.81 16 28 H 0.41 12.12 7.32 -92.71 -0.68 11.44 16 29 H 0.24 4.15 8.06 -2.91 -0.02 4.13 16 30 H 0.00 -0.06 7.43 -2.39 -0.02 -0.08 16 31 H 0.02 0.79 7.20 -2.39 -0.02 0.78 16 32 H 0.02 0.82 6.53 -2.39 -0.02 0.81 16 33 H 0.24 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -60.20 298.36 2.31 -57.89 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.46 Total: 10.29 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 5.28 Total: 14.91 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -4.09 Total: -117.16 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.07 Total: -19.02 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: 11.31 SS G_CDS: -1.30 Total: 10.01 kcal Total: -60.20 2.31 -57.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755292858.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.316 kcal (2) G-P(sol) polarization free energy of solvation -60.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds