Wall clock time and date at job start Mon Mar 30 2020 01:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48503 * 109.46852 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47287 * 300.00327 * 3 2 1 6 6 H 1.48499 * 109.47067 * 60.00387 * 3 2 1 7 7 C 1.38634 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99864 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.35796 * 116.99832 * 185.05704 * 9 7 2 11 11 C 1.38878 * 120.01428 * 354.46182 * 10 9 7 12 12 C 1.38045 * 119.98924 * 180.02562 * 11 10 9 13 13 C 1.38771 * 120.01161 * 0.02562 * 12 11 10 14 14 O 1.35945 * 119.98745 * 179.97438 * 13 12 11 15 15 C 1.42899 * 116.99913 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47220 * 179.97438 * 15 14 13 17 17 C 1.38237 * 120.00232 * 269.73136 * 16 15 14 18 18 C 1.38232 * 119.99716 * 179.76320 * 17 16 15 19 19 C 1.38230 * 120.00248 * 0.48394 * 18 17 16 20 20 C 1.38233 * 120.00115 * 359.79220 * 19 18 17 21 21 C 1.38234 * 120.00045 * 359.95126 * 20 19 18 22 22 C 1.38770 * 120.02884 * 0.23143 * 13 12 11 23 23 C 1.38054 * 120.01155 * 359.49037 * 22 13 12 24 24 H 0.97008 * 119.99999 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.00827 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.99728 * 180.02562 * 12 11 10 27 27 H 1.09002 * 109.47549 * 299.99998 * 15 14 13 28 28 H 1.09001 * 109.47196 * 59.99698 * 15 14 13 29 29 H 1.08002 * 119.99435 * 359.97438 * 17 16 15 30 30 H 1.08003 * 119.99287 * 180.24567 * 18 17 16 31 31 H 1.08003 * 119.99969 * 179.76462 * 19 18 17 32 32 H 1.08007 * 120.00066 * 179.97438 * 20 19 18 33 33 H 1.07997 * 120.00272 * 180.02562 * 21 20 19 34 34 H 1.07991 * 119.99938 * 179.74495 * 22 13 12 35 35 H 1.07993 * 120.01057 * 180.25762 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3463 -0.0006 5 1 1.8910 2.3965 -1.2124 6 1 1.8910 2.3964 1.2125 7 6 2.0088 -1.2006 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3347 -2.3681 -0.0005 10 6 2.0703 -3.5047 0.1056 11 6 3.4574 -3.4383 0.0919 12 6 4.2046 -4.5940 0.1993 13 6 3.5700 -5.8221 0.3203 14 8 4.3063 -6.9601 0.4255 15 6 3.5874 -8.1890 0.5477 16 6 4.5626 -9.3333 0.6515 17 6 4.9984 -9.9760 -0.4922 18 6 5.8966 -11.0224 -0.3972 19 6 6.3514 -11.4326 0.8420 20 6 5.9112 -10.7937 1.9861 21 6 5.0170 -9.7438 1.8908 22 6 2.1839 -5.8897 0.3287 23 6 1.4356 -4.7341 0.2272 24 1 -0.4850 0.8401 0.0004 25 1 3.9515 -2.4826 -0.0035 26 1 5.2834 -4.5425 0.1891 27 1 2.9655 -8.1588 1.4424 28 1 2.9555 -8.3290 -0.3294 29 1 4.6396 -9.6582 -1.4601 30 1 6.2401 -11.5219 -1.2910 31 1 7.0503 -12.2527 0.9164 32 1 6.2662 -11.1145 2.9544 33 1 4.6734 -9.2443 2.7846 34 1 1.6905 -6.8461 0.4188 35 1 0.3570 -4.7863 0.2379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019505150.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:53 Heat of formation + Delta-G solvation = -30.526537 kcal Electronic energy + Delta-G solvation = -18701.822024 eV Core-core repulsion = 15630.240299 eV Total energy + Delta-G solvation = -3071.581725 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21787 -40.27928 -39.42080 -37.12634 -34.22794 -33.08787 -31.94024 -31.80962 -29.66924 -27.72100 -26.86478 -23.84088 -23.49603 -22.91344 -22.05138 -19.84202 -19.36881 -18.24953 -17.80774 -16.90483 -16.80668 -16.29429 -16.03202 -15.61519 -15.41738 -15.26471 -15.18804 -14.42710 -14.28023 -14.05926 -13.85458 -13.56654 -13.31674 -13.12557 -13.10479 -12.71151 -12.28758 -12.08742 -11.97241 -11.86053 -11.55294 -11.16926 -10.68553 -9.93726 -9.83830 -9.79889 -8.61967 -8.44335 -6.11043 0.28018 0.42591 0.48623 0.69066 1.37178 1.44893 1.55227 2.19472 2.35653 2.79595 3.02933 3.14189 3.51169 3.77923 3.87020 3.97502 4.07513 4.13527 4.27437 4.28861 4.31483 4.44045 4.54334 4.63823 4.73786 4.80835 5.04068 5.08133 5.14319 5.16140 5.35912 5.41583 5.53977 5.59553 5.63489 5.63956 5.85520 6.03667 6.07818 6.58915 7.00557 7.81324 8.79127 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.053540 B = 0.002962 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.845226 B = 9449.497339 C = 9664.697143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.411 4.411 8 H 0.102 0.898 9 O -0.232 6.232 10 C 0.086 3.914 11 C -0.200 4.200 12 C -0.104 4.104 13 C 0.052 3.948 14 O -0.323 6.323 15 C 0.096 3.904 16 C -0.110 4.110 17 C -0.111 4.111 18 C -0.130 4.130 19 C -0.116 4.116 20 C -0.130 4.130 21 C -0.111 4.111 22 C -0.148 4.148 23 C -0.162 4.162 24 H 0.272 0.728 25 H 0.130 0.870 26 H 0.141 0.859 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.129 0.871 34 H 0.156 0.844 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.847 -20.786 1.749 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.487 4.487 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.036 3.964 11 C -0.219 4.219 12 C -0.123 4.123 13 C 0.007 3.993 14 O -0.238 6.238 15 C 0.022 3.978 16 C -0.110 4.110 17 C -0.129 4.129 18 C -0.148 4.148 19 C -0.134 4.134 20 C -0.148 4.148 21 C -0.129 4.129 22 C -0.167 4.167 23 C -0.181 4.181 24 H 0.081 0.919 25 H 0.148 0.852 26 H 0.159 0.841 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.147 0.853 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.163 0.837 33 H 0.147 0.853 34 H 0.173 0.827 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.649 -20.652 1.728 23.773 hybrid contribution -0.294 0.981 -0.040 1.025 sum 11.355 -19.671 1.688 22.775 Atomic orbital electron populations 1.70198 1.07983 1.28627 1.49288 1.26556 0.96849 1.02666 0.96044 0.84536 0.78288 0.74955 0.78483 1.17439 1.19427 1.19442 1.21841 0.92510 0.81502 1.52897 0.88088 1.83953 1.35531 1.12334 1.82145 1.19822 0.91386 0.88235 0.96947 1.21088 0.92984 0.99198 1.08628 1.20279 1.00310 0.89054 1.02641 1.18689 0.90016 0.86355 1.04201 1.86061 1.35528 1.12929 1.89332 1.21691 0.93247 0.80232 1.02653 1.19654 1.00151 0.96581 0.94633 1.21322 0.97313 0.96201 0.98093 1.21475 0.97236 0.97011 0.99048 1.21590 0.99465 1.00051 0.92283 1.21476 0.97335 0.95912 1.00055 1.21321 0.97256 0.97273 0.97098 1.21072 0.92303 0.98569 1.04750 1.20281 1.00162 0.89797 1.07854 0.91924 0.85192 0.84144 0.90545 0.90513 0.85300 0.83719 0.83402 0.83732 0.85334 0.82654 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.81 13.67 21.61 0.30 -56.51 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 3 Si 1.02 43.05 29.55 68.60 2.03 45.08 16 4 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.41 -23.99 9.49 67.91 0.64 -23.35 16 8 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 9 O -0.23 -13.99 9.76 -23.08 -0.23 -14.21 16 10 C 0.09 4.29 6.65 22.58 0.15 4.44 16 11 C -0.20 -8.87 9.16 22.38 0.21 -8.67 16 12 C -0.10 -3.92 9.98 22.35 0.22 -3.70 16 13 C 0.05 1.82 6.69 22.52 0.15 1.97 16 14 O -0.32 -9.97 10.12 -92.93 -0.94 -10.91 16 15 C 0.10 2.26 4.86 71.24 0.35 2.60 16 16 C -0.11 -2.38 5.51 -19.86 -0.11 -2.49 16 17 C -0.11 -2.15 9.70 22.27 0.22 -1.93 16 18 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 19 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 20 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 21 C -0.11 -2.16 9.70 22.27 0.22 -1.94 16 22 C -0.15 -5.12 9.03 22.35 0.20 -4.92 16 23 C -0.16 -6.87 9.99 22.38 0.22 -6.65 16 24 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 25 H 0.13 5.77 5.63 -2.91 -0.02 5.75 16 26 H 0.14 4.56 8.06 -2.91 -0.02 4.53 16 27 H 0.08 1.62 7.62 -2.39 -0.02 1.60 16 28 H 0.08 1.62 7.59 -2.39 -0.02 1.60 16 29 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 30 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 34 H 0.16 4.12 6.29 -2.91 -0.02 4.10 16 35 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -71.30 307.85 5.86 -65.44 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 1.10 Total: 21.70 kcal Atomic # 6 Polarization: -54.19 SS G_CDS: 3.60 Total: -50.58 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.30 Total: -56.51 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -1.17 Total: -25.13 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.30 5.86 -65.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019505150.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.917 kcal (2) G-P(sol) polarization free energy of solvation -71.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds