Wall clock time and date at job start Mon Mar 30 2020 01:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48498 * 109.47183 * 239.99843 * 3 2 1 5 5 H 1.48496 * 109.47264 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46761 * 120.00094 * 3 2 1 7 7 C 1.37879 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00083 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.46938 * 180.02562 * 9 7 2 11 11 C 1.35982 * 116.99701 * 180.02562 * 10 9 7 12 12 C 1.38702 * 119.99733 * 359.71977 * 11 10 9 13 13 C 1.38122 * 120.00298 * 179.72758 * 12 11 10 14 14 C 1.38727 * 119.99466 * 0.57130 * 13 12 11 15 15 O 1.35965 * 120.00588 * 179.72251 * 14 13 12 16 16 C 1.35877 * 117.99400 * 67.42119 * 15 14 13 17 17 C 1.38759 * 120.06172 * 5.85350 * 16 15 14 18 18 C 1.38142 * 119.94128 * 179.76173 * 17 16 15 19 19 C 1.38274 * 120.05881 * 0.48838 * 18 17 16 20 20 C 1.38272 * 120.11552 * 359.76380 * 19 18 17 21 21 C 1.38142 * 120.05994 * 0.02562 * 20 19 18 22 22 C 1.38733 * 119.99598 * 359.70656 * 14 13 12 23 23 C 1.38113 * 119.99494 * 359.97438 * 22 14 13 24 24 H 0.96996 * 120.00057 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47077 * 60.00160 * 9 7 2 26 26 H 1.09005 * 109.46756 * 300.00402 * 9 7 2 27 27 H 1.08002 * 119.99981 * 0.02562 * 12 11 10 28 28 H 1.07995 * 120.00423 * 180.27819 * 13 12 11 29 29 H 1.07994 * 120.03148 * 359.97438 * 17 16 15 30 30 H 1.07996 * 119.96990 * 180.22837 * 18 17 16 31 31 H 1.07993 * 119.94305 * 179.74698 * 19 18 17 32 32 H 1.08000 * 119.97108 * 179.97438 * 20 19 18 33 33 H 1.08002 * 120.03049 * 179.97438 * 21 20 19 34 34 H 1.07992 * 120.00304 * 179.97438 * 22 14 13 35 35 H 1.08007 * 120.00050 * 179.97438 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.6601 -4.8418 -0.0011 12 6 0.2850 -5.0235 0.0043 13 6 -0.2430 -6.2998 -0.0020 14 6 0.6020 -7.4000 -0.0016 15 8 0.0825 -8.6564 -0.0020 16 6 -0.5863 -9.0697 -1.1103 17 6 -0.6195 -8.2671 -2.2417 18 6 -1.2960 -8.6918 -3.3688 19 6 -1.9483 -9.9110 -3.3667 20 6 -1.9212 -10.7104 -2.2387 21 6 -1.2425 -10.2924 -1.1105 22 6 1.9774 -7.2181 -0.0011 23 6 2.5051 -5.9418 -0.0016 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 -0.3729 -4.1670 0.0085 28 1 -1.3137 -6.4413 -0.0023 29 1 -0.1139 -7.3128 -2.2425 30 1 -1.3190 -8.0692 -4.2509 31 1 -2.4801 -10.2394 -4.2474 32 1 -2.4319 -11.6621 -2.2395 33 1 -1.2220 -10.9169 -0.2296 34 1 2.6353 -8.0745 -0.0004 35 1 3.5758 -5.8001 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019808997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:01 Heat of formation + Delta-G solvation = -21.644974 kcal Electronic energy + Delta-G solvation = -19005.140183 eV Core-core repulsion = 15933.943591 eV Total energy + Delta-G solvation = -3071.196592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80177 -39.18494 -37.85338 -36.00945 -32.97251 -31.16634 -30.85217 -30.29069 -28.80238 -27.34101 -23.73956 -23.20581 -22.70125 -21.91074 -20.96893 -18.57823 -17.57196 -16.68792 -16.67771 -15.93328 -15.79666 -14.77663 -14.71178 -14.59294 -14.30236 -14.01144 -13.75137 -13.51887 -13.25839 -12.90296 -12.42050 -12.19263 -11.92810 -11.70500 -11.49191 -11.12452 -11.06851 -10.94022 -10.61052 -10.23886 -10.14445 -9.37699 -9.10983 -8.84392 -8.65024 -8.35615 -7.53230 -6.30747 -4.35148 1.23456 1.27714 1.52929 1.54712 3.22459 3.25681 3.27707 3.29055 3.69292 4.02608 4.07300 4.42984 4.77404 4.83149 5.04712 5.06550 5.07676 5.13218 5.27299 5.31015 5.47874 5.55705 5.71595 5.86054 5.90691 6.15123 6.23162 6.30724 6.33947 6.42938 6.56509 6.58642 6.73401 6.85092 6.96303 7.04823 7.60017 7.70384 7.87312 8.33987 8.75996 9.30412 10.80367 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.034503 B = 0.003409 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.339157 B = 8212.385155 C = 8661.776658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.071 0.929 9 C 0.191 3.809 10 O -0.312 6.312 11 C 0.158 3.842 12 C -0.198 4.198 13 C -0.093 4.093 14 C 0.015 3.985 15 O -0.253 6.253 16 C 0.125 3.875 17 C -0.193 4.193 18 C -0.082 4.082 19 C -0.161 4.161 20 C -0.087 4.087 21 C -0.153 4.153 22 C -0.080 4.080 23 C -0.156 4.156 24 H 0.269 0.731 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.141 0.859 28 H 0.125 0.875 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 -18.076 -3.961 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.089 0.911 9 C 0.119 3.881 10 O -0.225 6.225 11 C 0.109 3.891 12 C -0.217 4.217 13 C -0.111 4.111 14 C -0.027 4.027 15 O -0.165 6.165 16 C 0.081 3.919 17 C -0.212 4.212 18 C -0.100 4.100 19 C -0.179 4.179 20 C -0.105 4.105 21 C -0.171 4.171 22 C -0.099 4.099 23 C -0.174 4.174 24 H 0.078 0.922 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.159 0.841 28 H 0.143 0.857 29 H 0.151 0.849 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.721 -17.960 -3.786 18.555 hybrid contribution -0.004 1.112 -0.070 1.114 sum -2.725 -16.848 -3.856 17.497 Atomic orbital electron populations 1.69931 1.06149 1.27850 1.49263 1.24937 0.95061 0.99579 0.94547 0.86286 0.79283 0.81300 0.79037 1.19804 1.20948 1.19803 1.20925 0.94278 0.88661 1.52647 0.91105 1.20709 0.88669 0.81731 0.97020 1.86166 1.39148 1.11673 1.85474 1.19358 0.91531 0.86823 0.91351 1.21375 0.94987 0.97872 1.07437 1.21163 0.99691 0.91670 0.98618 1.18390 0.91737 0.82247 1.10289 1.84436 1.67083 1.29595 1.35360 1.19334 0.92740 0.93894 0.85901 1.21468 1.04457 1.01635 0.93634 1.21007 0.95601 0.95935 0.97503 1.21067 1.02501 0.95498 0.98814 1.20928 0.97793 0.99394 0.92365 1.20424 1.01137 0.95513 1.00070 1.20788 0.93104 0.96973 0.99010 1.20312 1.00063 0.89580 1.07473 0.92184 0.95909 0.95887 0.84111 0.85672 0.84950 0.85770 0.86056 0.85514 0.85275 0.85096 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 20.95 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.53 -14.77 9.43 -34.44 -0.32 -15.10 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.19 4.95 4.49 36.01 0.16 5.11 16 10 O -0.31 -7.32 10.12 -19.68 -0.20 -7.52 16 11 C 0.16 3.10 6.69 -39.24 -0.26 2.84 16 12 C -0.20 -3.64 9.03 -39.45 -0.36 -3.99 16 13 C -0.09 -1.49 8.33 -39.44 -0.33 -1.82 16 14 C 0.02 0.24 4.73 -39.22 -0.19 0.05 16 15 O -0.25 -3.80 10.00 -3.75 -0.04 -3.83 16 16 C 0.12 1.70 6.54 -39.19 -0.26 1.45 16 17 C -0.19 -2.57 8.79 -39.42 -0.35 -2.92 16 18 C -0.08 -0.93 10.04 -39.60 -0.40 -1.33 16 19 C -0.16 -1.59 10.04 -39.56 -0.40 -1.99 16 20 C -0.09 -0.85 10.04 -39.60 -0.40 -1.24 16 21 C -0.15 -1.75 9.99 -39.42 -0.39 -2.15 16 22 C -0.08 -1.19 9.98 -39.44 -0.39 -1.58 16 23 C -0.16 -2.56 9.98 -39.45 -0.39 -2.96 16 24 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.02 0.61 7.67 -51.93 -0.40 0.21 16 26 H 0.02 0.62 7.65 -51.93 -0.40 0.22 16 27 H 0.14 2.70 6.29 -52.49 -0.33 2.37 16 28 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.13 1.88 6.18 -52.49 -0.32 1.56 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -29.33 308.16 -8.20 -37.53 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.96 Total: 2.03 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -4.37 Total: -24.04 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.74 Total: -24.73 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.24 Total: -11.35 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.33 -8.20 -37.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019808997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.883 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds