Wall clock time and date at job start Mon Mar 30 2020 01:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48498 * 109.47183 * 239.99843 * 3 2 1 5 5 H 1.48496 * 109.47264 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46761 * 120.00094 * 3 2 1 7 7 C 1.37879 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00083 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.46938 * 180.02562 * 9 7 2 11 11 C 1.35982 * 116.99701 * 180.02562 * 10 9 7 12 12 C 1.38702 * 119.99733 * 359.71977 * 11 10 9 13 13 C 1.38122 * 120.00298 * 179.72758 * 12 11 10 14 14 C 1.38727 * 119.99466 * 0.57130 * 13 12 11 15 15 O 1.35965 * 120.00588 * 179.72251 * 14 13 12 16 16 C 1.35877 * 117.99400 * 67.42119 * 15 14 13 17 17 C 1.38759 * 120.06172 * 5.85350 * 16 15 14 18 18 C 1.38142 * 119.94128 * 179.76173 * 17 16 15 19 19 C 1.38274 * 120.05881 * 0.48838 * 18 17 16 20 20 C 1.38272 * 120.11552 * 359.76380 * 19 18 17 21 21 C 1.38142 * 120.05994 * 0.02562 * 20 19 18 22 22 C 1.38733 * 119.99598 * 359.70656 * 14 13 12 23 23 C 1.38113 * 119.99494 * 359.97438 * 22 14 13 24 24 H 0.96996 * 120.00057 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47077 * 60.00160 * 9 7 2 26 26 H 1.09005 * 109.46756 * 300.00402 * 9 7 2 27 27 H 1.08002 * 119.99981 * 0.02562 * 12 11 10 28 28 H 1.07995 * 120.00423 * 180.27819 * 13 12 11 29 29 H 1.07994 * 120.03148 * 359.97438 * 17 16 15 30 30 H 1.07996 * 119.96990 * 180.22837 * 18 17 16 31 31 H 1.07993 * 119.94305 * 179.74698 * 19 18 17 32 32 H 1.08000 * 119.97108 * 179.97438 * 20 19 18 33 33 H 1.08002 * 120.03049 * 179.97438 * 21 20 19 34 34 H 1.07992 * 120.00304 * 179.97438 * 22 14 13 35 35 H 1.08007 * 120.00050 * 179.97438 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.6601 -4.8418 -0.0011 12 6 0.2850 -5.0235 0.0043 13 6 -0.2430 -6.2998 -0.0020 14 6 0.6020 -7.4000 -0.0016 15 8 0.0825 -8.6564 -0.0020 16 6 -0.5863 -9.0697 -1.1103 17 6 -0.6195 -8.2671 -2.2417 18 6 -1.2960 -8.6918 -3.3688 19 6 -1.9483 -9.9110 -3.3667 20 6 -1.9212 -10.7104 -2.2387 21 6 -1.2425 -10.2924 -1.1105 22 6 1.9774 -7.2181 -0.0011 23 6 2.5051 -5.9418 -0.0016 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 -0.3729 -4.1670 0.0085 28 1 -1.3137 -6.4413 -0.0023 29 1 -0.1139 -7.3128 -2.2425 30 1 -1.3190 -8.0692 -4.2509 31 1 -2.4801 -10.2394 -4.2474 32 1 -2.4319 -11.6621 -2.2395 33 1 -1.2220 -10.9169 -0.2296 34 1 2.6353 -8.0745 -0.0004 35 1 3.5758 -5.8001 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019808997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:01 Heat of formation + Delta-G solvation = -36.771940 kcal Electronic energy + Delta-G solvation = -19005.796137 eV Core-core repulsion = 15933.943591 eV Total energy + Delta-G solvation = -3071.852546 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.96486 -40.59355 -38.97794 -37.42696 -35.05904 -32.31504 -31.96859 -31.34315 -30.31333 -29.09463 -25.53495 -24.38665 -23.73284 -23.23653 -22.24832 -19.69383 -19.22670 -18.54739 -17.79976 -17.33007 -16.82960 -16.55944 -16.52343 -15.75148 -15.40022 -15.33874 -14.90357 -14.65576 -14.40856 -14.30376 -13.95207 -13.65885 -13.39715 -13.01216 -12.88386 -12.76309 -12.52918 -12.26954 -12.08244 -11.85631 -11.71918 -11.38720 -10.72877 -10.17521 -9.96262 -9.41042 -8.94268 -8.41239 -6.55840 0.08615 0.18218 0.38321 0.47158 1.39066 1.43459 1.51963 2.09085 2.24942 2.64257 2.71585 2.82397 2.93849 3.73643 3.80462 3.90719 3.98850 4.10640 4.26791 4.33782 4.35211 4.49043 4.55999 4.61145 4.75695 4.88762 4.93261 5.01368 5.07936 5.22200 5.29397 5.36675 5.47024 5.48522 5.54061 5.58419 5.79862 5.94510 6.43324 6.57213 6.72545 7.16093 8.70659 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.034503 B = 0.003409 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.339157 B = 8212.385155 C = 8661.776658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.987 3.013 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.560 4.560 8 H 0.069 0.931 9 C 0.210 3.790 10 O -0.331 6.331 11 C 0.117 3.883 12 C -0.206 4.206 13 C -0.092 4.092 14 C 0.030 3.970 15 O -0.260 6.260 16 C 0.097 3.903 17 C -0.212 4.212 18 C -0.093 4.093 19 C -0.154 4.154 20 C -0.081 4.081 21 C -0.156 4.156 22 C -0.072 4.072 23 C -0.145 4.145 24 H 0.274 0.726 25 H 0.004 0.996 26 H 0.003 0.997 27 H 0.121 0.879 28 H 0.136 0.864 29 H 0.114 0.886 30 H 0.137 0.863 31 H 0.151 0.849 32 H 0.162 0.838 33 H 0.144 0.856 34 H 0.165 0.835 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 -19.992 -4.667 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.597 4.597 8 H 0.087 0.913 9 C 0.136 3.864 10 O -0.244 6.244 11 C 0.071 3.929 12 C -0.225 4.225 13 C -0.111 4.111 14 C -0.012 4.012 15 O -0.173 6.173 16 C 0.054 3.946 17 C -0.230 4.230 18 C -0.111 4.111 19 C -0.172 4.172 20 C -0.099 4.099 21 C -0.175 4.175 22 C -0.090 4.090 23 C -0.163 4.163 24 H 0.083 0.917 25 H 0.022 0.978 26 H 0.021 0.979 27 H 0.139 0.861 28 H 0.154 0.846 29 H 0.132 0.868 30 H 0.155 0.845 31 H 0.169 0.831 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.183 0.817 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.666 -19.915 -4.495 20.590 hybrid contribution -0.146 1.426 0.082 1.436 sum -2.812 -18.489 -4.413 19.216 Atomic orbital electron populations 1.70042 1.07758 1.29162 1.49386 1.25957 0.96007 1.03370 0.93404 0.85168 0.78080 0.76289 0.79529 1.18824 1.19884 1.18883 1.21299 0.94482 0.90099 1.53820 0.91323 1.20233 0.88448 0.82561 0.95113 1.86083 1.38630 1.12659 1.87066 1.19712 0.92617 0.86101 0.94513 1.21248 0.94522 0.98297 1.08413 1.21208 1.00482 0.90975 0.98415 1.18513 0.92079 0.82555 1.08023 1.84387 1.67703 1.28729 1.36454 1.19578 0.94256 0.95181 0.85545 1.21446 1.05645 1.01235 0.94722 1.21269 0.95481 0.96996 0.97321 1.21476 1.01309 0.94509 0.99945 1.21374 0.96683 1.00491 0.91346 1.20748 1.00588 0.94739 1.01385 1.21101 0.93276 0.97210 0.97463 1.20542 1.00685 0.89070 1.06010 0.91689 0.97809 0.97882 0.86104 0.84586 0.86800 0.84469 0.83094 0.82043 0.83842 0.81741 0.82811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 13.29 21.45 0.28 -53.81 16 2 C 0.01 0.69 5.46 84.65 0.46 1.15 16 3 Si 0.99 43.08 29.54 68.60 2.03 45.11 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.56 -32.52 9.43 25.60 0.24 -32.28 16 8 H 0.07 3.90 7.81 -2.91 -0.02 3.88 16 9 C 0.21 11.56 4.49 71.24 0.32 11.88 16 10 O -0.33 -16.37 10.12 -93.35 -0.94 -17.31 16 11 C 0.12 4.81 6.69 22.49 0.15 4.96 16 12 C -0.21 -8.05 9.03 22.35 0.20 -7.85 16 13 C -0.09 -3.06 8.33 22.36 0.19 -2.87 16 14 C 0.03 0.93 4.73 22.51 0.11 1.04 16 15 O -0.26 -7.53 10.00 -36.33 -0.36 -7.89 16 16 C 0.10 2.53 6.54 22.52 0.15 2.68 16 17 C -0.21 -5.53 8.79 22.37 0.20 -5.33 16 18 C -0.09 -1.94 10.04 22.26 0.22 -1.72 16 19 C -0.15 -2.55 10.04 22.29 0.22 -2.33 16 20 C -0.08 -1.29 10.04 22.25 0.22 -1.06 16 21 C -0.16 -3.19 9.99 22.37 0.22 -2.97 16 22 C -0.07 -2.05 9.98 22.36 0.22 -1.83 16 23 C -0.14 -4.73 9.98 22.35 0.22 -4.51 16 24 H 0.27 14.87 8.31 -92.71 -0.77 14.09 16 25 H 0.00 0.24 7.67 -2.39 -0.02 0.22 16 26 H 0.00 0.19 7.65 -2.38 -0.02 0.18 16 27 H 0.12 5.13 6.29 -2.91 -0.02 5.11 16 28 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 29 H 0.11 3.32 6.18 -2.91 -0.02 3.31 16 30 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 35 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -65.27 308.16 5.45 -59.83 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 1.09 Total: 15.11 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 3.35 Total: -41.04 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.28 Total: -53.81 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -1.31 Total: -25.20 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -65.27 5.45 -59.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019808997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.055 kcal (2) G-P(sol) polarization free energy of solvation -65.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds