Wall clock time and date at job start Mon Mar 30 2020 01:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 119.99708 * 2 1 4 4 C 1.50696 * 109.47214 * 270.00109 * 3 2 1 5 5 H 1.07998 * 119.99848 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00393 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99316 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00344 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47207 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47214 * 119.99861 * 8 6 4 11 11 H 1.48499 * 109.46895 * 240.00320 * 8 6 4 12 12 C 1.34772 * 119.99926 * 180.02562 * 2 1 3 13 13 O 1.21591 * 119.99503 * 179.97438 * 12 2 1 14 14 N 1.34772 * 120.00614 * 359.97438 * 12 2 1 15 15 C 1.40075 * 120.00327 * 184.43758 * 14 12 2 16 16 C 1.38786 * 120.05931 * 325.33693 * 15 14 12 17 17 C 1.38345 * 119.92509 * 179.97438 * 16 15 14 18 18 F 1.35104 * 119.96669 * 179.97438 * 17 16 15 19 19 C 1.38488 * 120.06380 * 0.02562 * 17 16 15 20 20 C 1.38253 * 120.12694 * 359.97438 * 19 17 16 21 21 C 1.38296 * 120.07167 * 0.02562 * 20 19 17 22 22 F 1.35105 * 120.03378 * 180.27188 * 21 20 19 23 23 H 1.09003 * 109.46903 * 269.99384 * 1 2 3 24 24 H 1.08995 * 109.47622 * 29.99538 * 1 2 3 25 25 H 1.09002 * 109.46873 * 150.00200 * 1 2 3 26 26 H 1.09002 * 109.47032 * 30.00158 * 3 2 1 27 27 H 1.08993 * 109.47002 * 150.00102 * 3 2 1 28 28 H 0.97002 * 119.99379 * 179.97438 * 7 6 4 29 29 H 0.97006 * 119.99510 * 4.43255 * 14 12 2 30 30 H 1.07996 * 120.03743 * 359.95932 * 16 15 14 31 31 H 1.08000 * 119.93630 * 180.02562 * 19 17 16 32 32 H 1.08000 * 119.96602 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2416 6 6 3.1259 2.8781 -1.6728 7 7 3.5531 3.6182 -0.6731 8 14 3.4365 3.4177 -3.4339 9 1 2.8586 2.4177 -4.3673 10 1 2.7984 4.7382 -3.6669 11 1 4.8990 3.5265 -3.6676 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1671 -0.0010 14 7 1.4651 -2.3344 -0.0005 15 6 2.1624 -3.5457 0.0928 16 6 3.4084 -3.6783 -0.5040 17 6 4.0949 -4.8757 -0.4097 18 9 5.3076 -5.0059 -0.9908 19 6 3.5397 -5.9413 0.2789 20 6 2.2987 -5.8118 0.8744 21 6 1.6077 -4.6173 0.7835 22 9 0.3975 -4.4898 1.3703 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5139 27 1 3.1499 1.1385 0.5138 28 1 4.0299 4.4441 -0.8504 29 1 0.4972 -2.3356 -0.0651 30 1 3.8414 -2.8478 -1.0417 31 1 4.0776 -6.8750 0.3517 32 1 1.8684 -6.6443 1.4112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033923308.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:06 Heat of formation + Delta-G solvation = -100.903411 kcal Electronic energy + Delta-G solvation = -20258.494471 eV Core-core repulsion = 16661.924197 eV Total energy + Delta-G solvation = -3596.570274 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.96728 -49.95886 -41.71893 -39.54533 -36.81172 -35.97417 -34.66237 -31.54942 -30.70482 -29.46264 -27.44688 -25.46652 -24.22716 -23.38430 -21.22505 -19.84720 -18.75271 -18.72788 -18.49859 -17.86318 -17.35469 -16.96949 -16.63531 -16.50615 -16.35092 -15.65832 -15.38040 -15.03971 -14.87124 -14.57760 -14.10920 -13.97147 -13.67642 -13.52122 -13.24136 -13.09055 -12.84638 -12.63050 -12.47651 -12.21655 -11.74495 -11.57468 -11.08572 -10.65869 -9.90453 -9.61382 -9.18774 -8.23824 -6.38511 -0.14824 0.01211 1.35954 1.38420 1.47626 1.53335 1.98309 2.35779 2.43458 2.85021 3.05492 3.06541 3.21274 3.62269 3.95381 4.05567 4.20684 4.37760 4.58558 4.70480 4.86333 4.92586 4.93360 5.02916 5.08447 5.16665 5.27709 5.49566 5.70090 5.80375 5.91696 6.02823 6.69830 6.88714 7.27593 7.48101 8.83259 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.005074 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.529931 B = 5517.436057 C = 6389.588868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.616 5.616 3 C 0.274 3.726 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.268 1.268 11 H -0.282 1.282 12 C 0.694 3.306 13 O -0.614 6.614 14 N -0.675 5.675 15 C 0.154 3.846 16 C -0.160 4.160 17 C 0.098 3.902 18 F -0.142 7.142 19 C -0.129 4.129 20 C -0.085 4.085 21 C 0.056 3.944 22 F -0.132 7.132 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.033 0.967 27 H 0.002 0.998 28 H 0.268 0.732 29 H 0.422 0.578 30 H 0.126 0.874 31 H 0.183 0.817 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.921 -19.689 2.596 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.350 5.350 3 C 0.153 3.847 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.193 1.193 10 H -0.193 1.193 11 H -0.208 1.208 12 C 0.396 3.604 13 O -0.494 6.494 14 N -0.327 5.327 15 C 0.056 3.944 16 C -0.182 4.182 17 C 0.078 3.922 18 F -0.121 7.121 19 C -0.148 4.148 20 C -0.104 4.104 21 C 0.034 3.966 22 F -0.110 7.110 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.051 0.949 27 H 0.020 0.980 28 H 0.077 0.923 29 H 0.263 0.737 30 H 0.144 0.856 31 H 0.201 0.799 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.045 -19.367 2.654 20.779 hybrid contribution 0.078 1.117 -0.909 1.442 sum -6.967 -18.250 1.745 19.612 Atomic orbital electron populations 1.21934 0.77761 1.04041 1.02843 1.47390 1.08107 1.04763 1.74773 1.18767 0.91030 0.78712 0.96199 1.21717 1.36955 1.06526 0.92982 0.92968 1.25820 0.94848 0.96380 1.01885 1.70051 1.38863 1.14836 1.32912 0.85366 0.77851 0.78398 0.79158 1.19340 1.19277 1.20826 1.16054 0.85085 0.81022 0.78246 1.90867 1.13589 1.86288 1.58669 1.42528 1.10866 1.02207 1.77056 1.17393 0.93599 0.85441 0.97949 1.21116 0.96055 0.98146 1.02870 1.17713 0.81882 0.94718 0.97905 1.91494 1.41812 1.96304 1.82504 1.21302 0.96277 0.99123 0.98100 1.21209 0.93637 0.96144 0.99382 1.17527 0.84272 0.95457 0.99345 1.91495 1.41166 1.96515 1.81859 0.90806 0.90324 0.89787 0.94931 0.98028 0.92330 0.73702 0.85636 0.79936 0.79054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.24 127.77 1.31 3.55 16 2 N -0.62 -26.44 2.86 -869.32 -2.48 -28.92 16 3 C 0.27 14.78 5.16 85.63 0.44 15.23 16 4 C -0.54 -31.29 9.39 25.60 0.24 -31.05 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.57 5.46 84.65 0.46 1.03 16 7 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 8 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 C 0.69 30.21 8.12 179.06 1.45 31.67 16 13 O -0.61 -32.63 13.34 -4.00 -0.05 -32.69 16 14 N -0.68 -21.91 5.11 -317.01 -1.62 -23.53 16 15 C 0.15 4.66 6.31 38.15 0.24 4.90 16 16 C -0.16 -5.40 8.67 22.43 0.19 -5.20 16 17 C 0.10 2.64 7.29 22.35 0.16 2.80 16 18 F -0.14 -4.14 17.27 44.97 0.78 -3.37 16 19 C -0.13 -2.24 10.02 22.33 0.22 -2.01 16 20 C -0.08 -1.33 10.02 22.29 0.22 -1.11 16 21 C 0.06 1.28 7.31 22.48 0.16 1.44 16 22 F -0.13 -2.84 16.96 44.97 0.76 -2.08 16 23 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 25 H 0.08 1.87 6.30 -2.39 -0.02 1.85 16 26 H 0.03 1.75 8.07 -2.39 -0.02 1.74 16 27 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 28 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.42 10.58 6.36 -92.70 -0.59 9.99 16 30 H 0.13 5.30 6.20 -2.91 -0.02 5.28 16 31 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -74.67 290.47 5.39 -69.28 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.58 Total: 8.58 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 5.12 Total: 21.24 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -3.82 Total: -108.05 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.05 Total: -32.69 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 1.54 Total: -5.44 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -74.67 5.39 -69.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033923308.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.626 kcal (2) G-P(sol) polarization free energy of solvation -74.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds