Wall clock time and date at job start Mon Mar 30 2020 01:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.35471 * 116.99737 * 180.02562 * 11 10 9 13 13 C 1.39562 * 119.83067 * 359.72551 * 12 11 10 14 14 C 1.35789 * 121.79956 * 179.68061 * 13 12 11 15 15 C 1.40779 * 120.88869 * 0.61996 * 14 13 12 16 16 C 1.40464 * 121.20873 * 179.69578 * 15 14 13 17 17 C 1.36237 * 119.65776 * 179.97438 * 16 15 14 18 18 C 1.39199 * 120.97209 * 0.02562 * 17 16 15 19 19 C 1.36421 * 120.85647 * 359.94058 * 18 17 16 20 20 C 1.39847 * 119.63415 * 0.07680 * 19 18 17 21 21 C 1.39967 * 119.83349 * 180.02562 * 12 11 10 22 22 C 1.46125 * 120.75827 * 359.97438 * 21 12 11 23 23 O 1.21390 * 119.99854 * 0.02562 * 22 21 12 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 1.08003 * 119.10076 * 359.97438 * 13 12 11 30 30 H 1.07995 * 119.55691 * 180.29690 * 14 13 12 31 31 H 1.07999 * 120.17144 * 0.02562 * 16 15 14 32 32 H 1.08004 * 119.51746 * 180.02562 * 17 16 15 33 33 H 1.07994 * 119.56936 * 179.97438 * 18 17 16 34 34 H 1.07992 * 120.18270 * 180.02562 * 19 18 17 35 35 H 1.07992 * 120.00164 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 8 1.5308 -4.8996 0.0020 12 6 2.2687 -6.0357 0.0024 13 6 3.6621 -5.9585 -0.0035 14 6 4.4405 -7.0712 0.0031 15 6 3.8648 -8.3559 0.0031 16 6 4.6634 -9.5114 0.0036 17 6 4.0729 -10.7391 0.0042 18 6 2.6868 -10.8673 0.0038 19 6 1.8822 -9.7655 0.0041 20 6 2.4561 -8.4902 0.0031 21 6 1.6297 -7.2810 0.0023 22 6 0.1713 -7.3726 0.0024 23 8 -0.5003 -6.3614 0.0021 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6247 -2.5564 0.8919 27 1 2.8714 -3.6047 -0.8890 28 1 2.8726 -3.6039 0.8910 29 1 4.1344 -4.9873 -0.0088 30 1 5.5156 -6.9693 0.0030 31 1 5.7401 -9.4270 0.0042 32 1 4.6891 -11.6260 0.0049 33 1 2.2426 -11.8516 0.0039 34 1 0.8081 -9.8776 0.0043 35 1 -0.3090 -8.3398 0.0028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035101695.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:09 Heat of formation + Delta-G solvation = -55.522874 kcal Electronic energy + Delta-G solvation = -19232.532816 eV Core-core repulsion = 16159.867169 eV Total energy + Delta-G solvation = -3072.665648 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67407 -39.99956 -39.44284 -36.54969 -35.45049 -33.74108 -32.35766 -30.89204 -29.94025 -27.07044 -25.85591 -24.42453 -23.67871 -22.78161 -21.31378 -19.58336 -18.62514 -18.32932 -17.72486 -17.11680 -16.65366 -16.46768 -16.30192 -15.90023 -15.28935 -15.25578 -14.71008 -14.41803 -14.33315 -14.08314 -13.90991 -13.84825 -13.56042 -12.83483 -12.78683 -12.46631 -12.15139 -12.14373 -12.00995 -11.65940 -11.48969 -11.45376 -10.70178 -10.62091 -10.53651 -9.38058 -8.75070 -8.28510 -6.44192 -0.78452 0.10372 0.67925 1.38880 1.42386 1.53489 1.57423 2.14900 2.15011 2.43337 3.05382 3.15122 3.30720 3.64275 3.80983 3.89568 3.96212 4.17716 4.18537 4.21008 4.29297 4.44698 4.54911 4.63859 4.72342 4.86447 4.95939 5.16377 5.21841 5.24581 5.30134 5.39967 5.57279 5.62728 5.64258 5.72441 6.00891 6.06734 6.39137 6.66729 6.71199 7.26516 8.85027 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.034816 B = 0.003798 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.042966 B = 7369.872963 C = 8153.468324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.982 3.018 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.255 1.255 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.031 3.969 10 C 0.075 3.925 11 O -0.313 6.313 12 C 0.184 3.816 13 C -0.233 4.233 14 C -0.009 4.009 15 C -0.121 4.121 16 C -0.082 4.082 17 C -0.139 4.139 18 C -0.083 4.083 19 C -0.145 4.145 20 C 0.014 3.986 21 C -0.278 4.278 22 C 0.376 3.624 23 O -0.505 6.505 24 H 0.267 0.733 25 H -0.008 1.008 26 H -0.008 1.008 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.142 0.858 30 H 0.172 0.828 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.434 -24.463 0.011 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.584 4.584 8 H 0.094 0.906 9 C -0.006 4.006 10 C 0.001 3.999 11 O -0.224 6.224 12 C 0.135 3.865 13 C -0.251 4.251 14 C -0.027 4.027 15 C -0.121 4.121 16 C -0.099 4.099 17 C -0.157 4.157 18 C -0.101 4.101 19 C -0.163 4.163 20 C 0.013 3.987 21 C -0.281 4.281 22 C 0.240 3.760 23 O -0.382 6.382 24 H 0.076 0.924 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.159 0.841 30 H 0.189 0.811 31 H 0.174 0.826 32 H 0.172 0.828 33 H 0.174 0.826 34 H 0.164 0.836 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.711 -23.773 0.015 26.501 hybrid contribution -0.089 1.399 -0.010 1.402 sum 11.623 -22.374 0.005 25.213 Atomic orbital electron populations 1.70157 1.08331 1.28312 1.50461 1.26148 0.95824 1.04034 0.94018 0.85204 0.78554 0.77060 0.78730 1.19422 1.20736 1.17917 1.21402 0.93937 0.90707 1.52377 0.90578 1.18923 0.94461 0.91667 0.95574 1.23073 0.95555 0.80149 1.01121 1.86298 1.37197 1.13740 1.85196 1.20124 0.91326 0.86536 0.88520 1.21202 0.91644 1.02082 1.10182 1.21436 1.01507 0.90020 0.89694 1.18336 0.92690 0.94920 1.06193 1.21372 1.00733 0.90938 0.96891 1.21256 0.95313 0.98363 1.00737 1.21380 0.93955 0.99434 0.95296 1.21103 1.01630 0.90476 1.03088 1.18854 0.92182 0.91855 0.95780 1.21399 0.96698 0.90363 1.19596 1.24084 0.87618 0.94331 0.70013 1.90669 1.67456 1.42812 1.37249 0.92425 0.99002 0.98983 0.91312 0.91325 0.84067 0.81091 0.82598 0.82774 0.82623 0.83631 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.21 13.29 21.45 0.28 -58.92 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.98 44.37 29.54 68.60 2.03 46.39 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 7 C -0.55 -31.80 9.11 25.60 0.23 -31.57 16 8 H 0.08 4.05 7.74 -2.91 -0.02 4.02 16 9 C 0.03 1.81 5.34 29.85 0.16 1.96 16 10 C 0.08 3.45 4.66 71.98 0.34 3.79 16 11 O -0.31 -14.66 8.20 -66.76 -0.55 -15.20 16 12 C 0.18 6.87 6.71 23.01 0.15 7.02 16 13 C -0.23 -6.83 8.90 22.02 0.20 -6.63 16 14 C -0.01 -0.19 9.69 22.32 0.22 0.03 16 15 C -0.12 -2.58 5.74 -21.31 -0.12 -2.70 16 16 C -0.08 -1.14 9.77 22.35 0.22 -0.92 16 17 C -0.14 -1.57 9.95 22.03 0.22 -1.35 16 18 C -0.08 -1.02 9.96 22.08 0.22 -0.80 16 19 C -0.15 -2.53 9.45 22.24 0.21 -2.32 16 20 C 0.01 0.34 5.90 -19.94 -0.12 0.22 16 21 C -0.28 -9.07 6.05 -18.67 -0.11 -9.18 16 22 C 0.38 12.34 11.08 69.87 0.77 13.12 16 23 O -0.50 -22.84 16.00 17.56 0.28 -22.56 16 24 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H 0.07 2.88 7.62 -2.39 -0.02 2.87 16 28 H 0.07 2.88 7.65 -2.39 -0.02 2.86 16 29 H 0.14 3.93 6.19 -2.91 -0.02 3.91 16 30 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.15 0.79 8.06 -2.91 -0.02 0.76 16 33 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.15 1.91 6.43 -2.91 -0.02 1.89 16 35 H 0.14 2.97 6.50 -2.91 -0.02 2.95 16 Total: -1.00 -80.86 305.08 6.19 -74.66 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.10 Total: 4.62 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 3.05 Total: -28.99 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.28 Total: -58.92 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.27 Total: -37.77 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -80.86 6.19 -74.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035101695.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.141 kcal (2) G-P(sol) polarization free energy of solvation -80.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds