Wall clock time and date at job start Mon Mar 30 2020 01:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00023 * 2 1 4 4 H 1.48500 * 109.47687 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47549 * 300.00382 * 3 2 1 6 6 H 1.48508 * 109.46887 * 60.00367 * 3 2 1 7 7 C 1.37876 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00235 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00000 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47259 * 179.97438 * 9 7 2 11 11 C 1.35608 * 124.78444 * 265.76599 * 10 9 7 12 12 C 1.36667 * 109.69968 * 179.91017 * 11 10 9 13 13 C 1.46381 * 126.78680 * 179.48868 * 12 11 10 14 14 C 1.35453 * 120.00069 * 0.02578 * 13 12 11 15 15 C 1.41493 * 120.00193 * 179.97438 * 14 13 12 16 16 N 1.34774 * 120.00464 * 179.97438 * 15 14 13 17 17 O 1.21782 * 119.99973 * 0.02562 * 15 14 13 18 18 C 1.47514 * 106.42708 * 359.51320 * 12 11 10 19 19 C 1.39246 * 133.96911 * 179.97438 * 18 12 11 20 20 C 1.37779 * 119.67602 * 179.74196 * 19 18 12 21 21 C 1.38740 * 120.29480 * 0.23045 * 20 19 18 22 22 C 1.37772 * 120.63472 * 0.02562 * 21 20 19 23 23 C 1.37990 * 124.78123 * 84.99659 * 10 9 7 24 24 H 0.96999 * 120.00113 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46801 * 60.00152 * 9 7 2 26 26 H 1.08996 * 109.47075 * 299.99943 * 9 7 2 27 27 H 1.08002 * 125.14882 * 359.41986 * 11 10 9 28 28 H 1.08002 * 119.99949 * 180.02562 * 13 12 11 29 29 H 1.08002 * 119.99982 * 0.02562 * 14 13 12 30 30 H 0.97004 * 119.99587 * 0.02562 * 16 15 14 31 31 H 0.97002 * 120.00431 * 179.97438 * 16 15 14 32 32 H 1.08002 * 120.16463 * 0.02562 * 19 18 12 33 33 H 1.07998 * 119.85063 * 180.25701 * 20 19 18 34 34 H 1.08005 * 119.68337 * 180.02562 * 21 20 19 35 35 H 1.08001 * 120.03843 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.6424 -4.2536 -1.1131 12 6 3.5217 -5.2384 -0.7597 13 6 4.2111 -6.1629 -1.6612 14 6 4.0012 -6.0889 -2.9973 15 6 4.6681 -6.9821 -3.8688 16 7 4.4589 -6.9089 -5.1982 17 8 5.4303 -7.8179 -3.4175 18 6 3.6381 -5.1859 0.7099 19 6 4.3630 -5.9151 1.6489 20 6 4.2524 -5.6049 2.9867 21 6 3.4200 -4.5747 3.3998 22 6 2.6931 -3.8485 2.4820 23 6 2.7905 -4.1472 1.1266 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.3371 -4.0260 -2.1238 28 1 4.8871 -6.9040 -1.2610 29 1 3.3256 -5.3474 -3.3976 30 1 3.8515 -6.2434 -5.5576 31 1 4.9163 -7.5210 -5.7956 32 1 5.0123 -6.7170 1.3297 33 1 4.8165 -6.1660 3.7171 34 1 3.3411 -4.3397 4.4510 35 1 2.0478 -3.0488 2.8143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042520801.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:35 Heat of formation + Delta-G solvation = 23.279061 kcal Electronic energy + Delta-G solvation = -19198.621329 eV Core-core repulsion = 16161.665541 eV Total energy + Delta-G solvation = -3036.955788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.85167 -39.28895 -36.65491 -34.33676 -33.47206 -33.01281 -30.99042 -29.73188 -28.31742 -26.88235 -24.20174 -22.97856 -22.06605 -20.77221 -20.08871 -18.52403 -17.16981 -16.99862 -16.78574 -15.83044 -15.70621 -15.09179 -14.60080 -14.43675 -14.11082 -13.94341 -13.51691 -13.31015 -13.00799 -12.50883 -12.37555 -11.72324 -11.62223 -11.36315 -11.13055 -10.99682 -10.92253 -10.54273 -10.34029 -10.25515 -9.85371 -9.57748 -9.51410 -8.80656 -8.71086 -7.74464 -6.91341 -6.39276 -4.51075 1.07455 1.72187 2.16655 3.10348 3.18232 3.20648 3.26126 3.58909 3.86669 3.88859 4.17407 4.39450 4.92894 5.04516 5.17629 5.23018 5.38887 5.47301 5.57810 5.68286 5.83376 6.01199 6.10720 6.21139 6.37415 6.48121 6.54564 6.77217 6.80692 6.92390 6.94472 7.01678 7.17126 7.30727 7.51141 7.54053 7.69483 7.82379 7.87933 8.49025 8.56730 9.17901 10.65826 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.013939 B = 0.005449 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.321896 B = 5137.733773 C = 6681.833939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.229 3.771 10 N -0.435 5.435 11 C 0.131 3.869 12 C -0.227 4.227 13 C 0.085 3.915 14 C -0.302 4.302 15 C 0.563 3.437 16 N -0.862 5.862 17 O -0.571 6.571 18 C -0.085 4.085 19 C -0.088 4.088 20 C -0.145 4.145 21 C -0.120 4.120 22 C -0.102 4.102 23 C 0.095 3.905 24 H 0.269 0.731 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.170 0.830 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.400 0.600 31 H 0.396 0.604 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 -8.563 -2.550 9.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.112 3.888 10 N -0.109 5.109 11 C -0.006 4.006 12 C -0.234 4.234 13 C 0.064 3.936 14 C -0.324 4.324 15 C 0.356 3.644 16 N -0.424 5.424 17 O -0.454 6.454 18 C -0.089 4.089 19 C -0.107 4.107 20 C -0.164 4.164 21 C -0.139 4.139 22 C -0.122 4.122 23 C -0.011 4.011 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.187 0.813 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.228 0.772 31 H 0.225 0.775 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.067 -8.573 -2.051 9.708 hybrid contribution 0.111 1.282 -0.580 1.411 sum 4.177 -7.291 -2.631 8.805 Atomic orbital electron populations 1.69920 1.06111 1.27805 1.48777 1.24939 0.94949 0.99612 0.94112 0.86312 0.80128 0.82404 0.77979 1.19442 1.20549 1.20534 1.21364 0.93832 0.89640 1.53513 0.91505 1.19874 0.87055 0.81935 0.99986 1.44749 1.34981 1.27593 1.03580 1.22250 0.94472 0.91774 0.92153 1.18881 1.08945 1.04261 0.91291 1.21626 0.89462 0.90883 0.91630 1.21406 1.10222 1.06397 0.94335 1.17058 0.81086 0.83675 0.82612 1.43792 1.50485 1.40097 1.08023 1.90826 1.38774 1.38995 1.76773 1.19018 0.99706 0.97787 0.92363 1.20328 0.99103 0.99202 0.92021 1.20785 1.01095 0.99291 0.95226 1.20701 0.97944 0.96661 0.98589 1.20211 1.01569 1.00816 0.89620 1.18291 0.97649 0.96135 0.88989 0.92154 0.93108 0.93304 0.81332 0.85481 0.86209 0.77230 0.77507 0.86545 0.86575 0.86280 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.72 13.29 55.43 0.74 -22.98 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.55 -13.90 9.39 -34.44 -0.32 -14.22 16 8 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 9 C 0.23 5.28 5.70 -5.19 -0.03 5.25 16 10 N -0.44 -8.91 2.73 -115.37 -0.31 -9.22 16 11 C 0.13 2.33 10.66 -16.45 -0.18 2.15 16 12 C -0.23 -3.92 6.24 -103.41 -0.65 -4.56 16 13 C 0.08 1.32 9.68 -37.30 -0.36 0.96 16 14 C -0.30 -4.20 9.32 -39.34 -0.37 -4.56 16 15 C 0.56 8.07 7.83 -15.02 -0.12 7.95 16 16 N -0.86 -8.42 8.86 29.07 0.26 -8.16 16 17 O -0.57 -10.39 16.94 5.12 0.09 -10.31 16 18 C -0.08 -1.56 6.36 -104.93 -0.67 -2.23 16 19 C -0.09 -1.41 10.09 -39.37 -0.40 -1.80 16 20 C -0.15 -2.13 10.03 -39.56 -0.40 -2.53 16 21 C -0.12 -1.85 10.01 -39.57 -0.40 -2.25 16 22 C -0.10 -1.88 9.97 -39.42 -0.39 -2.27 16 23 C 0.10 1.90 6.79 -83.95 -0.57 1.33 16 24 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 25 H 0.05 1.18 8.11 -51.93 -0.42 0.76 16 26 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.17 2.50 7.19 -52.49 -0.38 2.12 16 28 H 0.13 1.98 7.45 -52.49 -0.39 1.59 16 29 H 0.12 1.42 6.88 -52.49 -0.36 1.05 16 30 H 0.40 2.78 8.79 -40.82 -0.36 2.42 16 31 H 0.40 3.32 8.93 -40.82 -0.36 2.95 16 32 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 35 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 314.03 15.07 4.73 4.73 Total: -1.00 -30.20 314.03 -8.39 -38.60 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -3.93 Total: 7.42 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -4.94 Total: -15.13 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.68 Total: -40.37 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.20 -8.39 -38.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042520801.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.874 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds