Wall clock time and date at job start Mon Mar 30 2020 00:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47185 * 2 1 4 4 C 1.50699 * 109.46798 * 239.99991 * 2 1 3 5 5 H 1.08003 * 120.00070 * 239.99567 * 4 2 1 6 6 C 1.37881 * 120.00129 * 60.00150 * 4 2 1 7 7 N 1.31517 * 119.99780 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00223 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46753 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47175 * 120.00096 * 8 6 4 11 11 H 1.48499 * 109.46746 * 240.00017 * 8 6 4 12 12 N 1.46498 * 109.47181 * 120.00425 * 2 1 3 13 13 C 1.34783 * 119.99659 * 274.72015 * 12 2 1 14 14 O 1.21590 * 120.00209 * 0.27745 * 13 12 2 15 15 N 1.34776 * 119.99858 * 180.27983 * 13 12 2 16 16 C 1.40184 * 120.00031 * 174.36631 * 15 13 12 17 17 C 1.38782 * 120.05378 * 335.21482 * 16 15 13 18 18 C 1.38151 * 119.98180 * 179.76973 * 17 16 15 19 19 C 1.38473 * 120.08357 * 0.51352 * 18 17 16 20 20 F 1.35103 * 119.94628 * 179.76873 * 19 18 17 21 21 C 1.38452 * 120.10456 * 359.73967 * 19 18 17 22 22 C 1.38308 * 120.01884 * 0.02562 * 21 19 18 23 23 F 1.35103 * 120.04129 * 179.97438 * 22 21 19 24 24 H 1.08995 * 109.47466 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46611 * 299.99927 * 1 2 3 26 26 H 1.09000 * 109.47071 * 59.99625 * 1 2 3 27 27 H 0.96998 * 119.99827 * 180.02562 * 7 6 4 28 28 H 0.96996 * 120.00654 * 94.99710 * 12 2 1 29 29 H 0.97004 * 120.00112 * 354.35646 * 15 13 12 30 30 H 1.07998 * 120.00585 * 0.03016 * 17 16 15 31 31 H 1.08005 * 119.95569 * 180.23571 * 18 17 16 32 32 H 1.07997 * 119.98866 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1481 -2.2856 -3.6039 10 1 1.1676 -1.5865 -4.8166 11 1 3.1470 -0.1857 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 2.1524 -0.0170 2.3557 14 8 1.8633 1.1628 2.4104 15 7 2.6070 -0.6510 3.4547 16 6 2.8587 0.0735 4.6282 17 6 3.1458 1.4296 4.5596 18 6 3.3889 2.1431 5.7174 19 6 3.3571 1.5048 6.9458 20 9 3.5999 2.2044 8.0758 21 6 3.0762 0.1510 7.0178 22 6 2.8274 -0.5665 5.8619 23 9 2.5537 -1.8877 5.9316 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.7088 1.1615 -3.4844 28 1 2.2490 -1.6318 1.1526 29 1 2.7599 -1.6087 3.4338 30 1 3.1750 1.9277 3.6019 31 1 3.6086 3.1993 5.6638 32 1 3.0514 -0.3449 7.9769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050337043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:35 Heat of formation + Delta-G solvation = -92.377410 kcal Electronic energy + Delta-G solvation = -19933.582282 eV Core-core repulsion = 16337.381723 eV Total energy + Delta-G solvation = -3596.200559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.06795 -48.98546 -40.28187 -38.28989 -35.23146 -34.31689 -32.50930 -30.87156 -29.68203 -28.07742 -25.32053 -23.67280 -22.85384 -21.31552 -20.02057 -18.67738 -18.14122 -17.70242 -16.78464 -16.15187 -15.99413 -15.65627 -15.36596 -15.20319 -14.78613 -14.56493 -14.27162 -13.95547 -13.38583 -13.02731 -12.49522 -12.48486 -12.33880 -11.81928 -11.61583 -11.14638 -11.06036 -10.84093 -10.41649 -10.30123 -10.25801 -9.58041 -9.11956 -9.05778 -8.64494 -8.21865 -7.82389 -6.19236 -4.28741 0.89296 0.99067 2.88650 3.19927 3.23616 3.28329 3.30831 3.75685 3.81675 4.26304 4.28651 4.53740 4.71526 4.83179 5.10981 5.13963 5.42759 5.68373 5.80993 6.05532 6.20057 6.38557 6.69241 6.87474 6.89832 6.98184 7.10142 7.32563 7.54705 7.71898 7.87845 8.07126 8.59755 8.72733 9.05042 9.39105 10.86838 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038723 B = 0.003819 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.908178 B = 7330.590197 C = 7650.347591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.279 3.721 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.713 5.713 13 C 0.694 3.306 14 O -0.578 6.578 15 N -0.689 5.689 16 C 0.151 3.849 17 C -0.081 4.081 18 C -0.135 4.135 19 C 0.092 3.908 20 F -0.138 7.138 21 C -0.168 4.168 22 C 0.080 3.920 23 F -0.133 7.133 24 H 0.027 0.973 25 H 0.016 0.984 26 H 0.092 0.908 27 H 0.265 0.735 28 H 0.388 0.612 29 H 0.408 0.592 30 H 0.172 0.828 31 H 0.144 0.856 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -2.533 15.284 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.177 3.823 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.364 5.364 13 C 0.394 3.606 14 O -0.456 6.456 15 N -0.335 5.335 16 C 0.052 3.948 17 C -0.101 4.101 18 C -0.155 4.155 19 C 0.072 3.928 20 F -0.116 7.116 21 C -0.188 4.188 22 C 0.057 3.943 23 F -0.112 7.112 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.221 0.779 29 H 0.243 0.757 30 H 0.189 0.811 31 H 0.162 0.838 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.275 -1.382 15.033 15.690 hybrid contribution 0.377 -1.592 -0.594 1.741 sum 4.652 -2.975 14.439 15.459 Atomic orbital electron populations 1.22114 0.98376 0.99225 1.01052 1.18758 0.90991 0.93806 0.78704 0.93058 1.21227 1.32640 1.13371 0.90154 0.91952 1.24879 0.94748 0.94942 0.99070 1.69908 1.35740 1.22358 1.23926 0.86365 0.78619 0.79500 0.82443 1.19737 1.20830 1.20820 1.45928 1.67959 1.13504 1.09000 1.16125 0.78568 0.85550 0.80318 1.90838 1.56678 1.14249 1.83881 1.42822 1.69179 1.11629 1.09898 1.17647 1.00048 0.92769 0.84309 1.21426 0.96173 0.91860 1.00690 1.21172 1.02482 1.01509 0.90312 1.17235 1.03889 0.89247 0.82476 1.91499 1.92052 1.78635 1.49455 1.20728 1.06044 0.93410 0.98581 1.16925 1.06621 0.78609 0.92109 1.91491 1.91620 1.31082 1.96990 0.95429 0.96526 0.88973 0.92520 0.77923 0.75692 0.81103 0.83825 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.28 6.82 2.56 -69.08 -0.18 6.64 16 3 H 0.05 1.44 7.57 -51.93 -0.39 1.04 16 4 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.15 11.32 55.43 0.63 -23.53 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.71 -14.10 5.07 -59.81 -0.30 -14.40 16 13 C 0.69 13.26 8.34 -86.91 -0.72 12.53 16 14 O -0.58 -12.90 13.17 5.29 0.07 -12.83 16 15 N -0.69 -10.25 5.33 -14.15 -0.08 -10.32 16 16 C 0.15 2.17 6.44 -83.54 -0.54 1.63 16 17 C -0.08 -1.16 8.72 -39.41 -0.34 -1.50 16 18 C -0.14 -1.62 10.02 -39.53 -0.40 -2.02 16 19 C 0.09 1.08 7.30 -39.42 -0.29 0.79 16 20 F -0.14 -1.61 17.26 2.25 0.04 -1.57 16 21 C -0.17 -1.88 10.00 -39.48 -0.39 -2.27 16 22 C 0.08 1.01 7.31 -39.26 -0.29 0.72 16 23 F -0.13 -1.64 16.81 2.25 0.04 -1.61 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 27 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.39 6.54 8.56 -40.82 -0.35 6.19 16 29 H 0.41 4.91 8.47 -40.82 -0.35 4.56 16 30 H 0.17 2.81 5.78 -52.49 -0.30 2.50 16 31 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 288.69 15.07 4.35 4.35 Total: -1.00 -28.67 288.69 -6.41 -35.08 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -2.94 Total: 8.81 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -3.20 Total: 0.93 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.25 Total: -48.25 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.07 Total: -12.83 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.67 -6.41 -35.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.296 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds