Wall clock time and date at job start Mon Mar 30 2020 00:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47185 * 2 1 4 4 C 1.50699 * 109.46798 * 239.99991 * 2 1 3 5 5 H 1.08003 * 120.00070 * 239.99567 * 4 2 1 6 6 C 1.37881 * 120.00129 * 60.00150 * 4 2 1 7 7 N 1.31517 * 119.99780 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00223 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46753 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47175 * 120.00096 * 8 6 4 11 11 H 1.48499 * 109.46746 * 240.00017 * 8 6 4 12 12 N 1.46498 * 109.47181 * 120.00425 * 2 1 3 13 13 C 1.34783 * 119.99659 * 274.72015 * 12 2 1 14 14 O 1.21590 * 120.00209 * 0.27745 * 13 12 2 15 15 N 1.34776 * 119.99858 * 180.27983 * 13 12 2 16 16 C 1.40184 * 120.00031 * 174.36631 * 15 13 12 17 17 C 1.38782 * 120.05378 * 335.21482 * 16 15 13 18 18 C 1.38151 * 119.98180 * 179.76973 * 17 16 15 19 19 C 1.38473 * 120.08357 * 0.51352 * 18 17 16 20 20 F 1.35103 * 119.94628 * 179.76873 * 19 18 17 21 21 C 1.38452 * 120.10456 * 359.73967 * 19 18 17 22 22 C 1.38308 * 120.01884 * 0.02562 * 21 19 18 23 23 F 1.35103 * 120.04129 * 179.97438 * 22 21 19 24 24 H 1.08995 * 109.47466 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46611 * 299.99927 * 1 2 3 26 26 H 1.09000 * 109.47071 * 59.99625 * 1 2 3 27 27 H 0.96998 * 119.99827 * 180.02562 * 7 6 4 28 28 H 0.96996 * 120.00654 * 94.99710 * 12 2 1 29 29 H 0.97004 * 120.00112 * 354.35646 * 15 13 12 30 30 H 1.07998 * 120.00585 * 0.03016 * 17 16 15 31 31 H 1.08005 * 119.95569 * 180.23571 * 18 17 16 32 32 H 1.07997 * 119.98866 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1481 -2.2856 -3.6039 10 1 1.1676 -1.5865 -4.8166 11 1 3.1470 -0.1857 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 2.1524 -0.0170 2.3557 14 8 1.8633 1.1628 2.4104 15 7 2.6070 -0.6510 3.4547 16 6 2.8587 0.0735 4.6282 17 6 3.1458 1.4296 4.5596 18 6 3.3889 2.1431 5.7174 19 6 3.3571 1.5048 6.9458 20 9 3.5999 2.2044 8.0758 21 6 3.0762 0.1510 7.0178 22 6 2.8274 -0.5665 5.8619 23 9 2.5537 -1.8877 5.9316 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.7088 1.1615 -3.4844 28 1 2.2490 -1.6318 1.1526 29 1 2.7599 -1.6087 3.4338 30 1 3.1750 1.9277 3.6019 31 1 3.6086 3.1993 5.6638 32 1 3.0514 -0.3449 7.9769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:35 Heat of formation + Delta-G solvation = -110.285267 kcal Electronic energy + Delta-G solvation = -19934.358825 eV Core-core repulsion = 16337.381723 eV Total energy + Delta-G solvation = -3596.977102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.05865 -49.93306 -41.65490 -39.51255 -36.92852 -35.73984 -34.35050 -31.88556 -31.25483 -29.48811 -27.32988 -24.82765 -24.01838 -22.83254 -21.66397 -20.06764 -19.32548 -18.89739 -18.02342 -17.70945 -17.05710 -16.95974 -16.68928 -16.36825 -16.24874 -15.89545 -15.51470 -15.24789 -14.88456 -14.44603 -14.10061 -13.81511 -13.54231 -13.33113 -12.98067 -12.88068 -12.73140 -12.61253 -12.27651 -12.10821 -11.56292 -11.11295 -11.08838 -10.61417 -10.06881 -9.88632 -9.03164 -8.17559 -6.34428 -0.13270 -0.01458 1.45716 1.46177 1.55085 1.60956 1.98299 2.41570 2.47743 2.81520 3.13505 3.26070 3.31777 3.60287 3.85802 4.09881 4.36191 4.68032 4.74083 4.88837 4.93412 5.00189 5.09022 5.11212 5.28608 5.37687 5.58590 5.61863 5.78942 5.81315 6.08209 6.14129 6.72763 7.10707 7.33343 7.56354 8.89031 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038723 B = 0.003819 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.908178 B = 7330.590197 C = 7650.347591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.287 3.713 3 H 0.006 0.994 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.284 1.284 12 N -0.710 5.710 13 C 0.696 3.304 14 O -0.614 6.614 15 N -0.673 5.673 16 C 0.128 3.872 17 C -0.096 4.096 18 C -0.129 4.129 19 C 0.098 3.902 20 F -0.134 7.134 21 C -0.155 4.155 22 C 0.087 3.913 23 F -0.129 7.129 24 H 0.039 0.961 25 H 0.013 0.987 26 H 0.068 0.932 27 H 0.266 0.734 28 H 0.404 0.596 29 H 0.422 0.578 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.445 -4.048 16.602 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.184 3.816 3 H 0.024 0.976 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.184 1.184 10 H -0.205 1.205 11 H -0.210 1.210 12 N -0.362 5.362 13 C 0.396 3.604 14 O -0.495 6.495 15 N -0.321 5.321 16 C 0.031 3.969 17 C -0.117 4.117 18 C -0.148 4.148 19 C 0.078 3.922 20 F -0.112 7.112 21 C -0.174 4.174 22 C 0.064 3.936 23 F -0.108 7.108 24 H 0.058 0.942 25 H 0.032 0.968 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.240 0.760 29 H 0.260 0.740 30 H 0.163 0.837 31 H 0.180 0.820 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.080 -2.947 16.409 17.428 hybrid contribution 0.162 -1.063 -0.855 1.374 sum 5.242 -4.010 15.554 16.896 Atomic orbital electron populations 1.21935 0.98331 0.99485 0.99691 1.18324 0.90949 0.91938 0.80405 0.97568 1.21549 1.32640 1.13642 0.90612 0.90783 1.25755 0.94858 0.95562 1.02195 1.70050 1.36908 1.23827 1.24611 0.85294 0.78046 0.78502 0.78459 1.18437 1.20545 1.21008 1.45504 1.68362 1.14112 1.08249 1.16151 0.78288 0.85048 0.80892 1.90826 1.58057 1.15969 1.84608 1.42453 1.68411 1.12239 1.09000 1.17816 1.01597 0.92992 0.84539 1.21218 0.97797 0.92229 1.00471 1.21291 1.01442 1.02335 0.89770 1.17234 1.03241 0.89477 0.82295 1.91519 1.91938 1.78613 1.49138 1.20984 1.04135 0.93092 0.99228 1.16861 1.06289 0.78749 0.91672 1.91505 1.91569 1.30794 1.96937 0.94167 0.96832 0.91312 0.92503 0.76047 0.73960 0.83693 0.82033 0.80604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.69 9.26 71.98 0.67 -6.02 16 2 C 0.29 14.36 2.56 44.25 0.11 14.47 16 3 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 4 C -0.55 -27.91 8.73 25.60 0.22 -27.68 16 5 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -51.14 11.32 21.45 0.24 -50.90 16 8 Si 0.97 40.90 29.54 68.60 2.03 42.93 16 9 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 10 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.71 -28.16 5.07 -461.40 -2.34 -30.50 16 13 C 0.70 26.90 8.34 179.05 1.49 28.39 16 14 O -0.61 -28.38 13.17 -4.00 -0.05 -28.44 16 15 N -0.67 -19.63 5.33 -316.93 -1.69 -21.32 16 16 C 0.13 3.57 6.44 38.12 0.25 3.81 16 17 C -0.10 -2.76 8.72 22.38 0.20 -2.56 16 18 C -0.13 -2.93 10.02 22.31 0.22 -2.71 16 19 C 0.10 2.04 7.30 22.38 0.16 2.20 16 20 F -0.13 -2.73 17.26 44.97 0.78 -1.95 16 21 C -0.15 -2.98 10.00 22.34 0.22 -2.76 16 22 C 0.09 1.99 7.31 22.47 0.16 2.16 16 23 F -0.13 -2.86 16.81 44.97 0.76 -2.10 16 24 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 27 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.40 13.26 8.56 -92.71 -0.79 12.46 16 29 H 0.42 9.58 8.47 -92.71 -0.78 8.80 16 30 H 0.15 5.00 5.78 -2.91 -0.02 4.98 16 31 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -62.12 288.69 3.49 -58.62 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.39 Total: 23.04 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 4.16 Total: 10.62 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -3.79 Total: -102.72 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.05 Total: -28.44 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 1.53 Total: -4.05 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -62.12 3.49 -58.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.661 kcal (2) G-P(sol) polarization free energy of solvation -62.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds