Wall clock time and date at job start Mon Mar 30 2020 01:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00013 * 2 1 4 4 H 1.48500 * 109.47378 * 270.00285 * 3 2 1 5 5 H 1.48502 * 109.47287 * 30.00419 * 3 2 1 6 6 H 1.48503 * 109.47111 * 150.00408 * 3 2 1 7 7 C 1.37878 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99953 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99787 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46795 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.46982 * 179.97438 * 10 9 7 12 12 C 1.34774 * 120.00319 * 179.97438 * 11 10 9 13 13 O 1.21505 * 119.99605 * 0.02562 * 12 11 10 14 14 C 1.48274 * 120.00300 * 180.02562 * 12 11 10 15 15 C 1.40284 * 119.23797 * 179.97438 * 14 12 11 16 16 C 1.36506 * 119.80868 * 179.78568 * 15 14 12 17 17 C 1.40753 * 118.24708 * 0.45844 * 16 15 14 18 18 C 1.40421 * 121.27354 * 179.82660 * 17 16 15 19 19 C 1.36134 * 119.64866 * 179.74331 * 18 17 16 20 20 C 1.39430 * 120.91254 * 359.97438 * 19 18 17 21 21 C 1.35990 * 121.08803 * 359.97438 * 20 19 18 22 22 C 1.40822 * 119.73851 * 0.02562 * 21 20 19 23 23 N 1.31873 * 119.23981 * 0.02562 * 14 12 11 24 24 H 0.96998 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47192 * 59.99896 * 9 7 2 26 26 H 1.08995 * 109.47596 * 299.99597 * 9 7 2 27 27 H 1.09002 * 109.47365 * 60.00383 * 10 9 7 28 28 H 1.08992 * 109.47667 * 299.99844 * 10 9 7 29 29 H 0.97004 * 120.00369 * 0.02562 * 11 10 9 30 30 H 1.07996 * 120.09678 * 0.02749 * 15 14 12 31 31 H 1.08005 * 120.87174 * 180.02562 * 16 15 14 32 32 H 1.08002 * 120.17609 * 359.73337 * 18 17 16 33 33 H 1.07998 * 119.54139 * 180.02562 * 19 18 17 34 34 H 1.08002 * 119.45589 * 180.02562 * 20 19 18 35 35 H 1.07999 * 120.13290 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6366 -0.0022 12 6 6.1604 -3.8038 -0.0018 13 8 5.5528 -4.8560 -0.0009 14 6 7.6432 -3.8038 -0.0024 15 6 8.3283 -5.0279 -0.0014 16 6 9.6933 -5.0416 -0.0064 17 6 10.3718 -3.8084 -0.0025 18 6 11.7747 -3.7483 -0.0036 19 6 12.3969 -2.5374 -0.0051 20 6 11.6603 -1.3536 -0.0060 21 6 10.3005 -1.3727 -0.0060 22 6 9.6192 -2.6051 -0.0045 23 7 8.2873 -2.6531 -0.0028 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8746 -0.6801 -0.8911 27 1 3.6579 -3.1506 -0.8908 28 1 3.6586 -3.1502 0.8892 29 1 5.9716 -1.7966 -0.0025 30 1 7.7775 -5.9569 -0.0006 31 1 10.2382 -5.9741 -0.0061 32 1 12.3571 -4.6578 -0.0032 33 1 13.4760 -2.4932 -0.0064 34 1 12.1781 -0.4058 -0.0076 35 1 9.7453 -0.4463 -0.0072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137824.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:57 Heat of formation + Delta-G solvation = 11.578641 kcal Electronic energy + Delta-G solvation = -18895.723648 eV Core-core repulsion = 15858.260492 eV Total energy + Delta-G solvation = -3037.463156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.18268 -39.25272 -37.07402 -35.08022 -33.84705 -32.75898 -31.11685 -30.44289 -29.81110 -25.91545 -24.46234 -23.70918 -22.39694 -20.93581 -20.63477 -18.37660 -17.88712 -17.41249 -16.84347 -15.47427 -15.35364 -15.34533 -14.74481 -14.58311 -14.40166 -14.15346 -13.90523 -13.38903 -13.25462 -13.19938 -12.57187 -11.98612 -11.94524 -11.79982 -11.47134 -11.18846 -10.88158 -10.41264 -10.37622 -10.12038 -9.91446 -9.52614 -9.29658 -9.08408 -8.65035 -8.59763 -8.49977 -6.09097 -4.09143 -0.04354 0.42060 1.66569 2.30358 3.22825 3.28262 3.34443 3.36092 3.38167 3.93154 3.93201 4.24890 4.40509 4.47538 4.51069 4.69384 4.83394 4.89424 5.06274 5.18778 5.24123 5.45809 5.63478 5.70724 5.76882 6.00992 6.07772 6.12031 6.18514 6.20561 6.49713 6.56949 6.71298 7.14179 7.25478 7.45518 7.68155 7.90938 8.42014 8.49126 8.95021 9.51224 11.03888 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.025398 B = 0.003824 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.203653 B = 7320.783187 C = 8402.540816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.127 3.873 11 N -0.701 5.701 12 C 0.558 3.442 13 O -0.537 6.537 14 C 0.126 3.874 15 C -0.124 4.124 16 C -0.065 4.065 17 C -0.091 4.091 18 C -0.101 4.101 19 C -0.111 4.111 20 C -0.107 4.107 21 C -0.083 4.083 22 C 0.124 3.876 23 N -0.444 5.444 24 H 0.265 0.735 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.407 0.593 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.524 -5.571 0.006 28.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.005 3.995 11 N -0.350 5.350 12 C 0.341 3.659 13 O -0.414 6.414 14 C -0.028 4.028 15 C -0.144 4.144 16 C -0.091 4.091 17 C -0.093 4.093 18 C -0.120 4.120 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.102 4.102 22 C 0.000 4.000 23 N -0.155 5.155 24 H 0.074 0.926 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.242 0.758 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 26.447 -5.345 0.009 26.982 hybrid contribution 1.055 0.580 -0.018 1.204 sum 27.502 -4.765 -0.009 27.912 Atomic orbital electron populations 1.69906 1.06288 1.27051 1.50484 1.24993 0.94761 0.99154 0.94344 0.86761 0.80339 0.83514 0.78567 1.20189 1.21272 1.18971 1.20913 0.88580 0.94922 1.51655 0.90560 1.19804 0.97978 0.91213 0.97052 1.21626 0.75458 1.00482 1.01901 1.46233 1.09215 1.08188 1.71366 1.17910 0.85177 0.84768 0.78029 1.90775 1.68518 1.31300 1.50764 1.21584 0.94977 0.89312 0.96973 1.21798 0.94656 0.99486 0.98492 1.21460 0.94086 0.97406 0.96118 1.18988 0.94959 0.94045 1.01302 1.20994 0.92492 0.98679 0.99826 1.20991 1.00416 0.92351 0.99097 1.20932 0.93772 0.98788 0.99157 1.20932 0.94173 0.96566 0.98530 1.18884 0.88734 0.93220 0.99145 1.67869 1.08939 1.28456 1.10274 0.92559 0.95851 0.96283 0.91571 0.91541 0.75758 0.83034 0.83699 0.85083 0.85417 0.85095 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.02 -0.53 4.16 -27.88 -0.12 -0.65 16 10 C 0.13 2.67 5.61 -4.04 -0.02 2.65 16 11 N -0.70 -12.72 5.54 -61.11 -0.34 -13.06 16 12 C 0.56 9.94 7.81 -12.13 -0.09 9.84 16 13 O -0.54 -10.87 16.28 5.36 0.09 -10.78 16 14 C 0.13 1.87 6.75 -82.95 -0.56 1.31 16 15 C -0.12 -1.51 9.54 -39.44 -0.38 -1.88 16 16 C -0.06 -0.62 9.88 -39.26 -0.39 -1.01 16 17 C -0.09 -0.95 5.75 -106.71 -0.61 -1.56 16 18 C -0.10 -0.77 9.77 -39.52 -0.39 -1.16 16 19 C -0.11 -0.75 9.96 -39.89 -0.40 -1.15 16 20 C -0.11 -0.81 9.94 -39.94 -0.40 -1.20 16 21 C -0.08 -0.84 9.99 -39.41 -0.39 -1.23 16 22 C 0.12 1.53 6.61 -84.85 -0.56 0.97 16 23 N -0.44 -6.39 9.47 -7.54 -0.07 -6.46 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 26 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 27 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.41 6.79 7.78 -40.82 -0.32 6.47 16 30 H 0.15 1.72 7.60 -52.49 -0.40 1.32 16 31 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 33 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -33.13 307.38 -8.35 -41.48 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.03 Total: 2.60 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -4.74 Total: -8.29 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.36 Total: -46.33 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.13 -8.35 -41.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137824.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.055 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds