Wall clock time and date at job start Mon Mar 30 2020 01:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00013 * 2 1 4 4 H 1.48500 * 109.47378 * 270.00285 * 3 2 1 5 5 H 1.48502 * 109.47287 * 30.00419 * 3 2 1 6 6 H 1.48503 * 109.47111 * 150.00408 * 3 2 1 7 7 C 1.37878 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99953 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99787 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46795 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.46982 * 179.97438 * 10 9 7 12 12 C 1.34774 * 120.00319 * 179.97438 * 11 10 9 13 13 O 1.21505 * 119.99605 * 0.02562 * 12 11 10 14 14 C 1.48274 * 120.00300 * 180.02562 * 12 11 10 15 15 C 1.40284 * 119.23797 * 179.97438 * 14 12 11 16 16 C 1.36506 * 119.80868 * 179.78568 * 15 14 12 17 17 C 1.40753 * 118.24708 * 0.45844 * 16 15 14 18 18 C 1.40421 * 121.27354 * 179.82660 * 17 16 15 19 19 C 1.36134 * 119.64866 * 179.74331 * 18 17 16 20 20 C 1.39430 * 120.91254 * 359.97438 * 19 18 17 21 21 C 1.35990 * 121.08803 * 359.97438 * 20 19 18 22 22 C 1.40822 * 119.73851 * 0.02562 * 21 20 19 23 23 N 1.31873 * 119.23981 * 0.02562 * 14 12 11 24 24 H 0.96998 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47192 * 59.99896 * 9 7 2 26 26 H 1.08995 * 109.47596 * 299.99597 * 9 7 2 27 27 H 1.09002 * 109.47365 * 60.00383 * 10 9 7 28 28 H 1.08992 * 109.47667 * 299.99844 * 10 9 7 29 29 H 0.97004 * 120.00369 * 0.02562 * 11 10 9 30 30 H 1.07996 * 120.09678 * 0.02749 * 15 14 12 31 31 H 1.08005 * 120.87174 * 180.02562 * 16 15 14 32 32 H 1.08002 * 120.17609 * 359.73337 * 18 17 16 33 33 H 1.07998 * 119.54139 * 180.02562 * 19 18 17 34 34 H 1.08002 * 119.45589 * 180.02562 * 20 19 18 35 35 H 1.07999 * 120.13290 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6366 -0.0022 12 6 6.1604 -3.8038 -0.0018 13 8 5.5528 -4.8560 -0.0009 14 6 7.6432 -3.8038 -0.0024 15 6 8.3283 -5.0279 -0.0014 16 6 9.6933 -5.0416 -0.0064 17 6 10.3718 -3.8084 -0.0025 18 6 11.7747 -3.7483 -0.0036 19 6 12.3969 -2.5374 -0.0051 20 6 11.6603 -1.3536 -0.0060 21 6 10.3005 -1.3727 -0.0060 22 6 9.6192 -2.6051 -0.0045 23 7 8.2873 -2.6531 -0.0028 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8746 -0.6801 -0.8911 27 1 3.6579 -3.1506 -0.8908 28 1 3.6586 -3.1502 0.8892 29 1 5.9716 -1.7966 -0.0025 30 1 7.7775 -5.9569 -0.0006 31 1 10.2382 -5.9741 -0.0061 32 1 12.3571 -4.6578 -0.0032 33 1 13.4760 -2.4932 -0.0064 34 1 12.1781 -0.4058 -0.0076 35 1 9.7453 -0.4463 -0.0072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137824.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:56 Heat of formation + Delta-G solvation = -11.116804 kcal Electronic energy + Delta-G solvation = -18896.707797 eV Core-core repulsion = 15858.260492 eV Total energy + Delta-G solvation = -3038.447305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.05459 -40.54935 -37.89903 -36.76014 -34.94899 -34.51149 -32.39810 -31.50143 -30.92146 -27.41419 -25.74047 -24.61229 -23.08692 -22.73766 -22.01193 -19.35939 -19.11044 -18.79005 -18.16506 -16.76911 -16.74642 -16.39567 -16.17093 -15.58516 -15.56317 -15.36939 -14.97731 -14.77422 -14.62515 -14.21485 -14.03468 -13.39487 -13.10649 -12.70461 -12.62681 -12.45863 -12.27468 -12.20447 -11.79365 -11.65166 -11.58762 -11.38392 -10.80630 -10.63166 -10.20588 -9.81751 -9.27622 -8.31945 -6.39012 -0.86405 -0.35167 0.91697 1.36427 1.37529 1.39574 1.51320 2.02029 2.19906 2.35166 2.93829 3.02840 3.07606 3.56626 3.66979 3.82154 3.88699 4.15008 4.24886 4.29270 4.37402 4.38350 4.51188 4.70499 4.77421 4.90416 5.03316 5.05793 5.09931 5.33561 5.35454 5.38039 5.44202 5.49634 5.58954 5.86493 6.19430 6.34148 6.65182 6.70204 7.05119 7.25553 8.84686 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.025398 B = 0.003824 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.203653 B = 7320.783187 C = 8402.540816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.538 4.538 8 H 0.033 0.967 9 C -0.013 4.013 10 C 0.142 3.858 11 N -0.698 5.698 12 C 0.559 3.441 13 O -0.569 6.569 14 C 0.099 3.901 15 C -0.142 4.142 16 C -0.045 4.045 17 C -0.101 4.101 18 C -0.100 4.100 19 C -0.103 4.103 20 C -0.092 4.092 21 C -0.111 4.111 22 C 0.096 3.904 23 N -0.463 5.463 24 H 0.269 0.731 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.415 0.585 30 H 0.152 0.848 31 H 0.187 0.813 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.598 -4.626 -0.001 32.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.577 4.577 8 H 0.052 0.948 9 C -0.051 4.051 10 C 0.019 3.981 11 N -0.348 5.348 12 C 0.344 3.656 13 O -0.449 6.449 14 C -0.054 4.054 15 C -0.163 4.163 16 C -0.070 4.070 17 C -0.103 4.103 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.112 4.112 21 C -0.130 4.130 22 C -0.028 4.028 23 N -0.175 5.175 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.252 0.748 30 H 0.169 0.831 31 H 0.204 0.796 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.178 0.822 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 31.548 -4.408 0.002 31.854 hybrid contribution -0.353 0.255 -0.018 0.436 sum 31.195 -4.152 -0.016 31.470 Atomic orbital electron populations 1.70064 1.08420 1.28457 1.51877 1.26024 0.95679 1.03675 0.93651 0.85583 0.79559 0.77670 0.79380 1.18931 1.20860 1.16551 1.21214 0.91213 0.93592 1.51631 0.94827 1.19651 0.94746 0.92764 0.97926 1.21189 0.77452 0.98829 1.00668 1.46019 1.07788 1.09074 1.71949 1.18410 0.86799 0.83831 0.76562 1.90737 1.69761 1.32245 1.52113 1.21132 0.92908 0.90894 1.00433 1.21828 0.95972 0.98326 1.00188 1.21895 0.92948 0.98925 0.93275 1.19328 0.96505 0.93506 1.00992 1.21408 0.91146 1.00657 0.98621 1.21492 1.02299 0.91541 0.96769 1.21362 0.92775 1.00714 0.96306 1.21086 0.95467 0.95840 1.00574 1.19322 0.88164 0.95113 1.00185 1.67721 1.10519 1.28404 1.10871 0.92231 0.94766 0.94885 0.92927 0.92929 0.74764 0.83069 0.79551 0.81660 0.81736 0.82224 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 2 C 0.01 0.42 5.47 84.65 0.46 0.88 16 3 Si 0.96 43.76 27.47 68.60 1.88 45.65 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 7 C -0.54 -31.56 9.66 25.60 0.25 -31.32 16 8 H 0.03 2.18 7.99 -2.91 -0.02 2.16 16 9 C -0.01 -0.62 4.16 29.85 0.12 -0.50 16 10 C 0.14 6.21 5.61 86.38 0.48 6.69 16 11 N -0.70 -26.15 5.54 -465.56 -2.58 -28.73 16 12 C 0.56 20.79 7.81 86.91 0.68 21.47 16 13 O -0.57 -24.30 16.28 -3.73 -0.06 -24.36 16 14 C 0.10 3.02 6.75 42.31 0.29 3.31 16 15 C -0.14 -3.43 9.54 22.36 0.21 -3.22 16 16 C -0.04 -0.75 9.88 22.48 0.22 -0.53 16 17 C -0.10 -1.84 5.75 -21.22 -0.12 -1.96 16 18 C -0.10 -1.05 9.77 22.31 0.22 -0.84 16 19 C -0.10 -0.87 9.96 22.07 0.22 -0.65 16 20 C -0.09 -1.03 9.94 22.03 0.22 -0.81 16 21 C -0.11 -2.04 9.99 22.38 0.22 -1.81 16 22 C 0.10 2.27 6.61 40.47 0.27 2.53 16 23 N -0.46 -13.45 9.47 -177.77 -1.68 -15.13 16 24 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 25 H 0.03 1.55 7.20 -2.39 -0.02 1.53 16 26 H 0.03 1.48 7.57 -2.39 -0.02 1.46 16 27 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.42 14.04 7.78 -92.71 -0.72 13.32 16 30 H 0.15 3.51 7.60 -2.91 -0.02 3.48 16 31 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 33 H 0.17 0.25 8.06 -2.91 -0.02 0.22 16 34 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 35 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -76.15 307.38 1.94 -74.21 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.34 Total: 14.77 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 3.74 Total: -6.76 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -3.96 Total: -103.51 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.06 Total: -24.36 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.65 kcal Total: -76.15 1.94 -74.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137824.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.089 kcal (2) G-P(sol) polarization free energy of solvation -76.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds