Wall clock time and date at job start Mon Mar 30 2020 01:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48502 * 109.47146 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46990 * 120.00064 * 3 2 1 6 6 H 1.48497 * 109.47350 * 240.00386 * 3 2 1 7 7 C 1.39064 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99655 * 180.60330 * 7 2 1 9 9 N 1.36798 * 120.00011 * 0.59739 * 7 2 1 10 10 C 1.34775 * 120.00163 * 147.64830 * 9 7 2 11 11 O 1.21701 * 119.99864 * 359.14167 * 10 9 7 12 12 C 1.46902 * 120.00218 * 179.15308 * 10 9 7 13 13 C 1.36013 * 125.43948 * 187.64307 * 12 10 9 14 14 C 1.41552 * 107.71919 * 179.84033 * 13 12 10 15 15 C 1.40131 * 133.36171 * 180.13356 * 14 13 12 16 16 C 1.36437 * 119.82285 * 180.34684 * 15 14 13 17 17 C 1.38938 * 120.61625 * 359.95110 * 16 15 14 18 18 C 1.37694 * 120.65189 * 0.02994 * 17 16 15 19 19 C 1.39196 * 119.81447 * 359.97438 * 18 17 16 20 20 N 1.37528 * 133.16703 * 180.02562 * 19 18 17 21 21 H 0.97006 * 125.60566 * 0.03322 * 20 19 18 22 22 C 1.46507 * 120.00053 * 327.64144 * 9 7 2 23 23 C 1.53001 * 117.49969 * 317.34148 * 22 9 7 24 24 C 1.52997 * 117.49772 * 248.68223 * 22 9 7 25 25 H 0.97003 * 120.00092 * 355.00966 * 1 2 3 26 26 H 1.08000 * 126.13754 * 359.97119 * 13 12 10 27 27 H 1.07997 * 120.08668 * 0.34576 * 15 14 13 28 28 H 1.07998 * 119.69045 * 179.97438 * 16 15 14 29 29 H 1.08004 * 119.67157 * 180.02562 * 17 16 15 30 30 H 1.07997 * 120.08943 * 179.97438 * 18 17 16 31 31 H 1.09000 * 115.54870 * 103.00879 * 22 9 7 32 32 H 1.09006 * 117.49788 * 359.97438 * 23 22 9 33 33 H 1.08997 * 117.50040 * 145.01913 * 23 22 9 34 34 H 1.09003 * 117.49687 * 214.98133 * 24 22 9 35 35 H 1.09003 * 117.50284 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 1.2825 2.7465 0.0006 5 1 3.1013 1.6964 1.2125 6 1 3.1012 1.6966 -1.2125 7 6 2.0089 -1.2043 -0.0005 8 1 3.0889 -1.2043 0.0093 9 7 1.3250 -2.3890 -0.0134 10 6 1.8476 -3.4621 -0.6394 11 8 2.9207 -3.3729 -1.2065 12 6 1.1219 -4.7393 -0.6373 13 6 1.6062 -5.9224 -1.1018 14 6 0.6017 -6.9021 -0.9155 15 6 0.5316 -8.2735 -1.1948 16 6 -0.6044 -8.9689 -0.8994 17 6 -1.6951 -8.3304 -0.3223 18 6 -1.6505 -6.9838 -0.0380 19 6 -0.5028 -6.2525 -0.3300 20 7 -0.1634 -4.9296 -0.1677 21 1 -0.7329 -4.2431 0.2136 22 6 0.0245 -2.4914 0.6534 23 6 -0.1188 -1.8334 2.0272 24 6 -0.0582 -3.3585 1.9111 25 1 -0.4850 0.8369 0.0731 26 1 2.5828 -6.0854 -1.5332 27 1 1.3746 -8.7785 -1.6426 28 1 -0.6563 -10.0257 -1.1160 29 1 -2.5866 -8.8958 -0.0944 30 1 -2.5037 -6.4966 0.4104 31 1 -0.8440 -2.4756 -0.0052 32 1 0.7548 -1.3248 2.4352 33 1 -1.0815 -1.3853 2.2727 34 1 -0.9812 -3.9131 2.0803 35 1 0.8549 -3.8533 2.2423 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058293359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:19 Heat of formation + Delta-G solvation = 73.911564 kcal Electronic energy + Delta-G solvation = -20400.968040 eV Core-core repulsion = 17366.207842 eV Total energy + Delta-G solvation = -3034.760198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.17529 -38.76852 -36.46947 -36.29714 -33.21617 -31.75189 -31.36096 -29.18874 -28.46203 -25.59182 -23.14202 -22.34400 -21.82093 -21.06932 -20.59352 -19.11302 -17.49867 -16.81161 -16.65386 -15.38980 -15.35034 -14.72858 -14.33405 -14.17831 -14.00536 -13.60527 -13.44157 -12.93145 -12.88156 -12.46720 -12.18961 -11.50761 -11.39526 -11.31503 -11.18208 -10.88219 -10.75009 -10.63853 -10.47114 -10.04460 -9.61444 -9.48817 -9.03782 -8.74614 -7.90836 -7.83587 -7.33355 -6.46165 -4.11777 1.22459 1.93655 2.70889 3.13929 3.16955 3.21126 3.53330 3.95758 4.14398 4.27381 4.42609 4.54111 4.96408 5.01967 5.21996 5.29937 5.44971 5.49081 5.65956 5.69142 5.72012 5.85208 5.97761 6.02808 6.11150 6.30432 6.39608 6.54405 6.66976 6.71420 6.84884 6.88825 7.02866 7.12977 7.38708 7.45627 7.88616 8.00871 8.30661 8.97070 9.15294 9.73802 10.56264 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.034631 B = 0.005455 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.341632 B = 5131.289802 C = 5701.967960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.042 3.958 3 Si 0.928 3.072 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.310 4.310 8 H 0.099 0.901 9 N -0.408 5.408 10 C 0.511 3.489 11 O -0.564 6.564 12 C 0.070 3.930 13 C -0.157 4.157 14 C -0.108 4.108 15 C -0.070 4.070 16 C -0.156 4.156 17 C -0.108 4.108 18 C -0.128 4.128 19 C 0.091 3.909 20 N -0.574 5.574 21 H 0.424 0.576 22 C 0.104 3.896 23 C -0.114 4.114 24 C -0.236 4.236 25 H 0.271 0.729 26 H 0.147 0.853 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 -9.886 2.865 11.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.164 4.164 3 Si 0.754 3.246 4 H -0.208 1.208 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.438 4.438 8 H 0.116 0.884 9 N -0.125 5.125 10 C 0.300 3.700 11 O -0.447 6.447 12 C -0.042 4.042 13 C -0.184 4.184 14 C -0.113 4.113 15 C -0.089 4.089 16 C -0.175 4.175 17 C -0.128 4.128 18 C -0.148 4.148 19 C -0.020 4.020 20 N -0.185 5.185 21 H 0.273 0.727 22 C -0.002 4.002 23 C -0.151 4.151 24 C -0.275 4.275 25 H 0.081 0.919 26 H 0.165 0.835 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.377 -9.437 2.587 11.165 hybrid contribution -0.140 1.219 0.263 1.254 sum -5.516 -8.218 2.850 10.300 Atomic orbital electron populations 1.69838 1.05999 1.28159 1.46406 1.25431 0.95564 0.99747 0.95617 0.85965 0.79030 0.80249 0.79336 1.20822 1.19791 1.19517 1.19520 0.92321 0.81426 1.50506 0.88379 1.42954 1.16335 1.09545 1.43712 1.17083 0.87208 0.82562 0.83193 1.90689 1.22442 1.83687 1.47837 1.20798 0.85171 0.96440 1.01783 1.20731 1.00120 0.90140 1.07369 1.18249 0.94577 0.94019 1.04500 1.20338 0.97819 0.91949 0.98811 1.20488 0.94053 0.99514 1.03471 1.20701 0.98491 0.93482 1.00096 1.20003 0.95769 0.94093 1.04962 1.18463 0.96314 0.84836 1.02384 1.43433 1.14041 1.08239 1.52798 0.72702 1.21273 0.88563 1.02357 0.87984 1.22687 1.02690 0.91325 0.98431 1.23798 1.02452 0.95944 1.05259 0.91891 0.83488 0.86378 0.86620 0.86306 0.86614 0.87735 0.88537 0.89263 0.89400 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.40 10.34 55.50 0.57 -20.82 16 2 C 0.04 1.05 4.92 -17.45 -0.09 0.97 16 3 Si 0.93 19.88 29.56 -169.99 -5.02 14.86 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.31 -8.23 8.55 -15.03 -0.13 -8.36 16 8 H 0.10 2.72 7.58 -52.49 -0.40 2.32 16 9 N -0.41 -10.11 2.91 -109.13 -0.32 -10.43 16 10 C 0.51 12.81 7.56 -12.75 -0.10 12.71 16 11 O -0.56 -15.83 16.66 5.19 0.09 -15.74 16 12 C 0.07 1.48 6.50 -82.31 -0.53 0.95 16 13 C -0.16 -3.07 10.55 -39.12 -0.41 -3.49 16 14 C -0.11 -1.89 6.16 -106.93 -0.66 -2.55 16 15 C -0.07 -1.02 10.06 -39.52 -0.40 -1.41 16 16 C -0.16 -1.96 9.96 -39.97 -0.40 -2.36 16 17 C -0.11 -1.34 10.02 -39.52 -0.40 -1.74 16 18 C -0.13 -1.79 10.08 -39.42 -0.40 -2.19 16 19 C 0.09 1.54 7.25 -83.96 -0.61 0.93 16 20 N -0.57 -10.44 4.74 -7.36 -0.03 -10.48 16 21 H 0.42 7.26 3.73 -40.82 -0.15 7.11 16 22 C 0.10 2.17 2.32 -67.93 -0.16 2.02 16 23 C -0.11 -2.17 8.25 -26.69 -0.22 -2.40 16 24 C -0.24 -4.09 7.77 -26.70 -0.21 -4.29 16 25 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 26 H 0.15 2.75 8.06 -52.49 -0.42 2.33 16 27 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 30 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.11 2.21 7.45 -51.93 -0.39 1.82 16 32 H 0.10 2.02 7.74 -51.93 -0.40 1.62 16 33 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.09 1.27 7.70 -51.93 -0.40 0.87 16 35 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 LS Contribution 294.56 15.07 4.44 4.44 Total: -1.00 -29.07 294.56 -8.81 -37.88 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -3.83 Total: 11.51 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -4.70 Total: -11.21 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.22 Total: -41.73 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.09 Total: -15.74 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.07 -8.81 -37.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058293359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.792 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds