Wall clock time and date at job start Mon Mar 30 2020 01:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48502 * 109.47146 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46990 * 120.00064 * 3 2 1 6 6 H 1.48497 * 109.47350 * 240.00386 * 3 2 1 7 7 C 1.39064 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99655 * 180.60330 * 7 2 1 9 9 N 1.36798 * 120.00011 * 0.59739 * 7 2 1 10 10 C 1.34775 * 120.00163 * 147.64830 * 9 7 2 11 11 O 1.21701 * 119.99864 * 359.14167 * 10 9 7 12 12 C 1.46902 * 120.00218 * 179.15308 * 10 9 7 13 13 C 1.36013 * 125.43948 * 187.64307 * 12 10 9 14 14 C 1.41552 * 107.71919 * 179.84033 * 13 12 10 15 15 C 1.40131 * 133.36171 * 180.13356 * 14 13 12 16 16 C 1.36437 * 119.82285 * 180.34684 * 15 14 13 17 17 C 1.38938 * 120.61625 * 359.95110 * 16 15 14 18 18 C 1.37694 * 120.65189 * 0.02994 * 17 16 15 19 19 C 1.39196 * 119.81447 * 359.97438 * 18 17 16 20 20 N 1.37528 * 133.16703 * 180.02562 * 19 18 17 21 21 H 0.97006 * 125.60566 * 0.03322 * 20 19 18 22 22 C 1.46507 * 120.00053 * 327.64144 * 9 7 2 23 23 C 1.53001 * 117.49969 * 317.34148 * 22 9 7 24 24 C 1.52997 * 117.49772 * 248.68223 * 22 9 7 25 25 H 0.97003 * 120.00092 * 355.00966 * 1 2 3 26 26 H 1.08000 * 126.13754 * 359.97119 * 13 12 10 27 27 H 1.07997 * 120.08668 * 0.34576 * 15 14 13 28 28 H 1.07998 * 119.69045 * 179.97438 * 16 15 14 29 29 H 1.08004 * 119.67157 * 180.02562 * 17 16 15 30 30 H 1.07997 * 120.08943 * 179.97438 * 18 17 16 31 31 H 1.09000 * 115.54870 * 103.00879 * 22 9 7 32 32 H 1.09006 * 117.49788 * 359.97438 * 23 22 9 33 33 H 1.08997 * 117.50040 * 145.01913 * 23 22 9 34 34 H 1.09003 * 117.49687 * 214.98133 * 24 22 9 35 35 H 1.09003 * 117.50284 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 1.2825 2.7465 0.0006 5 1 3.1013 1.6964 1.2125 6 1 3.1012 1.6966 -1.2125 7 6 2.0089 -1.2043 -0.0005 8 1 3.0889 -1.2043 0.0093 9 7 1.3250 -2.3890 -0.0134 10 6 1.8476 -3.4621 -0.6394 11 8 2.9207 -3.3729 -1.2065 12 6 1.1219 -4.7393 -0.6373 13 6 1.6062 -5.9224 -1.1018 14 6 0.6017 -6.9021 -0.9155 15 6 0.5316 -8.2735 -1.1948 16 6 -0.6044 -8.9689 -0.8994 17 6 -1.6951 -8.3304 -0.3223 18 6 -1.6505 -6.9838 -0.0380 19 6 -0.5028 -6.2525 -0.3300 20 7 -0.1634 -4.9296 -0.1677 21 1 -0.7329 -4.2431 0.2136 22 6 0.0245 -2.4914 0.6534 23 6 -0.1188 -1.8334 2.0272 24 6 -0.0582 -3.3585 1.9111 25 1 -0.4850 0.8369 0.0731 26 1 2.5828 -6.0854 -1.5332 27 1 1.3746 -8.7785 -1.6426 28 1 -0.6563 -10.0257 -1.1160 29 1 -2.5866 -8.8958 -0.0944 30 1 -2.5037 -6.4966 0.4104 31 1 -0.8440 -2.4756 -0.0052 32 1 0.7548 -1.3248 2.4352 33 1 -1.0815 -1.3853 2.2727 34 1 -0.9812 -3.9131 2.0803 35 1 0.8549 -3.8533 2.2423 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058293359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:19 Heat of formation + Delta-G solvation = 57.815636 kcal Electronic energy + Delta-G solvation = -20401.666012 eV Core-core repulsion = 17366.207842 eV Total energy + Delta-G solvation = -3035.458170 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.56265 -40.42521 -38.24694 -37.53377 -35.04718 -33.28548 -32.96677 -30.46008 -29.79965 -27.38791 -24.67587 -23.80033 -23.32730 -22.40209 -21.97552 -20.70231 -19.20186 -18.41153 -18.07163 -17.18051 -16.56226 -16.38390 -15.93804 -15.75025 -15.48640 -14.96367 -14.71623 -14.51034 -14.37119 -13.99446 -13.71924 -13.23121 -13.03827 -12.69061 -12.52075 -12.42272 -12.37456 -12.16199 -11.75400 -11.71931 -11.24854 -10.87690 -10.75603 -10.61320 -9.80383 -9.08781 -8.64587 -8.36628 -6.11804 -0.05535 0.80833 1.21776 1.38574 1.45265 1.48421 2.11614 2.22525 2.45712 2.75212 2.85775 3.07142 3.12516 3.74752 3.87941 3.94493 4.18401 4.23240 4.27738 4.32535 4.50249 4.58265 4.61113 4.70916 4.92898 4.98845 5.05311 5.15622 5.23279 5.30595 5.37046 5.61426 5.70463 5.78196 5.82840 6.03779 6.25706 6.42101 6.60784 7.03124 7.24862 7.83568 8.63115 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.034631 B = 0.005455 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.341632 B = 5131.289802 C = 5701.967960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.017 3.983 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.282 1.282 7 C -0.349 4.349 8 H 0.069 0.931 9 N -0.416 5.416 10 C 0.496 3.504 11 O -0.616 6.616 12 C 0.034 3.966 13 C -0.154 4.154 14 C -0.136 4.136 15 C -0.079 4.079 16 C -0.148 4.148 17 C -0.090 4.090 18 C -0.139 4.139 19 C 0.084 3.916 20 N -0.568 5.568 21 H 0.427 0.573 22 C 0.081 3.919 23 C -0.112 4.112 24 C -0.197 4.197 25 H 0.277 0.723 26 H 0.141 0.859 27 H 0.135 0.865 28 H 0.153 0.847 29 H 0.160 0.840 30 H 0.142 0.858 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.672 -11.998 3.799 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.188 4.188 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.207 1.207 7 C -0.477 4.477 8 H 0.087 0.913 9 N -0.132 5.132 10 C 0.287 3.713 11 O -0.503 6.503 12 C -0.077 4.077 13 C -0.182 4.182 14 C -0.141 4.141 15 C -0.098 4.098 16 C -0.167 4.167 17 C -0.109 4.109 18 C -0.159 4.159 19 C -0.026 4.026 20 N -0.180 5.180 21 H 0.276 0.724 22 C -0.024 4.024 23 C -0.150 4.150 24 C -0.235 4.235 25 H 0.087 0.913 26 H 0.158 0.842 27 H 0.153 0.847 28 H 0.170 0.830 29 H 0.178 0.822 30 H 0.159 0.841 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.146 0.854 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.411 -11.554 3.552 14.726 hybrid contribution 0.687 1.650 -0.065 1.789 sum -7.724 -9.903 3.487 13.035 Atomic orbital electron populations 1.69893 1.06431 1.29096 1.45282 1.26030 0.96479 1.01706 0.94603 0.85129 0.78137 0.77064 0.78840 1.19029 1.19129 1.20745 1.19444 0.91634 0.83230 1.53406 0.91313 1.43103 1.17348 1.08983 1.43810 1.17703 0.87026 0.84065 0.82498 1.90612 1.24711 1.84981 1.50032 1.20190 0.86973 0.95011 1.05556 1.20886 1.00444 0.90703 1.06156 1.18431 0.94181 0.95248 1.06218 1.20655 0.99519 0.90736 0.98871 1.20981 0.92950 1.01208 1.01513 1.21277 0.99554 0.92886 0.97183 1.20408 0.95411 0.94824 1.05274 1.18892 0.97341 0.84073 1.02322 1.43197 1.12815 1.09067 1.52947 0.72417 1.21318 0.86608 1.05762 0.88687 1.22666 1.02647 0.92728 0.96928 1.23742 1.03584 0.94980 1.01195 0.91283 0.84157 0.84747 0.82982 0.82247 0.84052 0.88056 0.90876 0.87233 0.85370 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.23 10.34 21.68 0.22 -43.01 16 2 C 0.02 0.88 4.92 84.96 0.42 1.29 16 3 Si 0.98 41.55 29.56 68.60 2.03 43.57 16 4 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.35 -19.68 8.55 84.12 0.72 -18.96 16 8 H 0.07 4.15 7.58 -2.91 -0.02 4.13 16 9 N -0.42 -21.82 2.91 -617.38 -1.80 -23.61 16 10 C 0.50 26.69 7.56 86.51 0.65 27.35 16 11 O -0.62 -37.60 16.66 -4.35 -0.07 -37.67 16 12 C 0.03 1.51 6.50 39.90 0.26 1.77 16 13 C -0.15 -6.29 10.55 22.57 0.24 -6.05 16 14 C -0.14 -4.63 6.16 -21.36 -0.13 -4.76 16 15 C -0.08 -2.07 10.06 22.31 0.22 -1.84 16 16 C -0.15 -2.97 9.96 22.02 0.22 -2.75 16 17 C -0.09 -1.72 10.02 22.31 0.22 -1.50 16 18 C -0.14 -3.31 10.08 22.37 0.23 -3.09 16 19 C 0.08 2.71 7.25 39.13 0.28 2.99 16 20 N -0.57 -20.61 4.74 -177.19 -0.84 -21.45 16 21 H 0.43 14.32 3.73 -92.70 -0.35 13.97 16 22 C 0.08 3.45 2.32 44.99 0.10 3.55 16 23 C -0.11 -4.26 8.25 30.62 0.25 -4.01 16 24 C -0.20 -6.65 7.77 30.62 0.24 -6.41 16 25 H 0.28 12.86 8.31 -92.71 -0.77 12.08 16 26 H 0.14 5.65 8.06 -2.91 -0.02 5.63 16 27 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 28 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 30 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.10 4.32 7.45 -2.39 -0.02 4.31 16 32 H 0.07 3.13 7.74 -2.38 -0.02 3.11 16 33 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 34 H 0.13 3.30 7.70 -2.39 -0.02 3.29 16 35 H 0.08 2.91 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -68.00 294.56 4.24 -63.75 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.77 Total: 30.83 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 3.93 Total: -12.41 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -2.41 Total: -88.07 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.07 Total: -37.67 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -68.00 4.24 -63.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058293359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.567 kcal (2) G-P(sol) polarization free energy of solvation -67.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds