Wall clock time and date at job start Mon Mar 30 2020 01:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.46884 * 179.97438 * 10 9 7 12 12 C 1.34727 * 117.00256 * 179.97438 * 11 10 9 13 13 O 1.21485 * 119.99917 * 0.02562 * 12 11 10 14 14 C 1.47644 * 120.00369 * 180.02562 * 12 11 10 15 15 C 1.40699 * 119.75277 * 359.72531 * 14 12 11 16 16 C 1.35715 * 120.84028 * 179.70527 * 15 14 12 17 17 C 1.40712 * 120.02626 * 0.57276 * 16 15 14 18 18 C 1.40473 * 121.03440 * 179.72027 * 17 16 15 19 19 C 1.36148 * 119.72800 * 180.02562 * 18 17 16 20 20 C 1.39367 * 121.00316 * 0.02562 * 19 18 17 21 21 C 1.36088 * 120.95853 * 359.97235 * 20 19 18 22 22 C 1.40664 * 119.65989 * 0.02636 * 21 20 19 23 23 C 1.38554 * 119.75476 * 180.02562 * 14 12 11 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 29 29 H 1.08003 * 119.57984 * 0.02562 * 15 14 12 30 30 H 1.08001 * 119.98363 * 180.30253 * 16 15 14 31 31 H 1.08006 * 120.13875 * 0.04042 * 18 17 16 32 32 H 1.07997 * 119.50178 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.51972 * 179.97438 * 20 19 18 34 34 H 1.07997 * 120.17161 * 180.02562 * 21 20 19 35 35 H 1.07995 * 120.27807 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5194 -4.9195 0.0011 12 6 2.2531 -6.0494 0.0007 13 8 3.4663 -5.9859 0.0003 14 6 1.5829 -7.3650 0.0007 15 6 0.1775 -7.4326 0.0070 16 6 -0.4614 -8.6299 0.0012 17 6 0.2819 -9.8247 0.0008 18 6 -0.3576 -11.0754 0.0007 19 6 0.3877 -12.2148 0.0008 20 6 1.7804 -12.1615 0.0016 21 6 2.4354 -10.9686 0.0017 22 6 1.6989 -9.7702 0.0016 23 6 2.3425 -8.5237 0.0008 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8905 29 1 -0.4001 -6.5201 0.0114 30 1 -1.5409 -8.6657 0.0012 31 1 -1.4361 -11.1331 0.0002 32 1 -0.1077 -13.1744 0.0003 33 1 2.3481 -13.0803 0.0021 34 1 3.5150 -10.9422 0.0019 35 1 3.4210 -8.4678 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058817460.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:40 Heat of formation + Delta-G solvation = -73.178045 kcal Electronic energy + Delta-G solvation = -18704.619977 eV Core-core repulsion = 15631.188743 eV Total energy + Delta-G solvation = -3073.431233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.80059 -40.87831 -37.89536 -37.19971 -35.46946 -33.76967 -32.53244 -31.47933 -30.25693 -27.35798 -25.56026 -24.16579 -23.13314 -22.87686 -22.15088 -19.50929 -18.51178 -18.21827 -17.92488 -17.57588 -17.21209 -16.57204 -16.09840 -15.67724 -15.25090 -14.84935 -14.54679 -14.52301 -14.40444 -14.32615 -14.00643 -13.21108 -13.17107 -12.88109 -12.65370 -12.59460 -12.30451 -12.25662 -11.92142 -11.80651 -11.56179 -11.53183 -11.38026 -11.03743 -10.63521 -9.71255 -8.94111 -8.28758 -6.42064 -0.77411 -0.20246 0.87164 1.29461 1.39890 1.40976 1.53748 1.65121 2.14055 2.38918 3.05678 3.08718 3.55010 3.59004 3.83336 3.95095 4.06010 4.14141 4.18220 4.20323 4.31673 4.41092 4.50620 4.64818 4.76649 4.87887 5.00355 5.12854 5.20940 5.25204 5.29553 5.43649 5.45769 5.55430 5.58069 5.71134 5.74102 6.00035 6.04289 6.61457 6.71648 7.27739 8.84233 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.051954 B = 0.003000 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.805383 B = 9330.508879 C = 9848.866691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.550 4.550 8 H 0.065 0.935 9 C 0.032 3.968 10 C 0.090 3.910 11 O -0.357 6.357 12 C 0.499 3.501 13 O -0.541 6.541 14 C -0.139 4.139 15 C -0.090 4.090 16 C -0.106 4.106 17 C -0.042 4.042 18 C -0.119 4.119 19 C -0.100 4.100 20 C -0.118 4.118 21 C -0.106 4.106 22 C -0.085 4.085 23 C -0.031 4.031 24 H 0.268 0.732 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.135 0.865 30 H 0.164 0.836 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.144 0.856 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.737 -26.673 0.006 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.083 0.917 9 C -0.005 4.005 10 C 0.017 3.983 11 O -0.274 6.274 12 C 0.346 3.654 13 O -0.434 6.434 14 C -0.140 4.140 15 C -0.108 4.108 16 C -0.124 4.124 17 C -0.042 4.042 18 C -0.137 4.137 19 C -0.117 4.117 20 C -0.135 4.135 21 C -0.124 4.124 22 C -0.085 4.085 23 C -0.049 4.049 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.153 0.847 30 H 0.181 0.819 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.172 0.828 34 H 0.162 0.838 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.541 -26.490 0.007 26.496 hybrid contribution 0.507 1.478 -0.001 1.563 sum -0.034 -25.012 0.007 25.012 Atomic orbital electron populations 1.70097 1.07811 1.28276 1.50381 1.25972 0.95867 1.03434 0.94022 0.85255 0.78853 0.77983 0.78082 1.18676 1.19954 1.19965 1.21392 0.93697 0.91178 1.52523 0.91724 1.18982 0.94292 0.90463 0.96791 1.23234 0.95217 0.78771 1.01097 1.86560 1.42039 1.15607 1.83152 1.21790 0.85530 0.86042 0.72028 1.90760 1.16052 1.88642 1.47931 1.19130 0.95055 0.88966 1.10888 1.21123 0.92247 1.00087 0.97322 1.21272 1.01478 0.90186 0.99458 1.18589 0.92429 0.95261 0.97955 1.21397 1.01579 0.90553 1.00152 1.21406 0.94109 0.99665 0.96563 1.21296 0.95171 0.98459 0.98612 1.21351 1.00887 0.91197 0.98979 1.18218 0.93582 0.93409 1.03268 1.21614 1.00515 0.90220 0.92522 0.92272 0.97404 0.97390 0.92097 0.92107 0.84727 0.81871 0.82722 0.82565 0.82829 0.83788 0.83935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.55 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.06 3.59 7.74 -2.91 -0.02 3.56 16 9 C 0.03 1.76 5.35 29.85 0.16 1.92 16 10 C 0.09 4.24 5.41 71.98 0.39 4.63 16 11 O -0.36 -15.46 9.43 -56.37 -0.53 -15.99 16 12 C 0.50 19.60 7.89 70.31 0.55 20.15 16 13 O -0.54 -23.25 16.09 19.88 0.32 -22.93 16 14 C -0.14 -4.38 5.87 -20.12 -0.12 -4.50 16 15 C -0.09 -2.44 9.51 22.29 0.21 -2.23 16 16 C -0.11 -2.21 9.73 22.29 0.22 -2.00 16 17 C -0.04 -0.85 5.75 -21.25 -0.12 -0.97 16 18 C -0.12 -1.62 9.76 22.33 0.22 -1.41 16 19 C -0.10 -1.07 9.95 22.05 0.22 -0.85 16 20 C -0.12 -1.37 9.95 22.04 0.22 -1.16 16 21 C -0.11 -1.72 9.77 22.36 0.22 -1.51 16 22 C -0.08 -1.87 5.74 -21.31 -0.12 -1.99 16 23 C -0.03 -0.82 9.34 22.84 0.21 -0.60 16 24 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 25 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.13 3.78 7.57 -2.91 -0.02 3.75 16 30 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 32 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 33 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 34 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.14 3.65 7.61 -2.91 -0.02 3.63 16 Total: -1.00 -70.57 312.31 6.14 -64.43 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.09 Total: 5.26 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 2.95 Total: -21.23 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.28 Total: -55.68 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.21 Total: -38.92 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -70.57 6.14 -64.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817460.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.746 kcal (2) G-P(sol) polarization free energy of solvation -70.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds