Wall clock time and date at job start Mon Mar 30 2020 01:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48502 * 109.47235 * 270.00168 * 3 2 1 5 5 H 1.48504 * 109.47032 * 29.99932 * 3 2 1 6 6 H 1.48504 * 109.47167 * 150.00014 * 3 2 1 7 7 C 1.37879 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99953 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99548 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46870 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47062 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99662 * 180.02562 * 11 10 9 13 13 O 1.21564 * 120.00230 * 0.02562 * 12 11 10 14 14 C 1.47765 * 119.99834 * 180.02562 * 12 11 10 15 15 C 1.40632 * 119.80304 * 0.02562 * 14 12 11 16 16 C 1.35708 * 120.91964 * 180.02562 * 15 14 12 17 17 C 1.40761 * 120.11128 * 0.23973 * 16 15 14 18 18 N 1.33652 * 120.82609 * 180.29144 * 17 16 15 19 19 C 1.31114 * 121.39466 * 179.76689 * 18 17 16 20 20 C 1.39314 * 121.76562 * 359.69938 * 19 18 17 21 21 C 1.36577 * 119.91102 * 0.02562 * 20 19 18 22 22 C 1.40899 * 118.15355 * 359.97438 * 21 20 19 23 23 C 1.38547 * 119.80629 * 180.02562 * 14 12 11 24 24 H 0.96995 * 120.00257 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47060 * 60.00203 * 9 7 2 26 26 H 1.08992 * 109.47279 * 299.99918 * 9 7 2 27 27 H 1.09004 * 109.47069 * 60.00057 * 10 9 7 28 28 H 1.08998 * 109.47664 * 300.00578 * 10 9 7 29 29 H 0.96993 * 120.00094 * 0.02562 * 11 10 9 30 30 H 1.07999 * 119.54042 * 0.02681 * 15 14 12 31 31 H 1.08002 * 119.93971 * 179.97438 * 16 15 14 32 32 H 1.07995 * 119.11837 * 179.72783 * 19 18 17 33 33 H 1.08005 * 120.04631 * 179.97438 * 20 19 18 34 34 H 1.07997 * 120.92636 * 179.97438 * 21 20 19 35 35 H 1.08002 * 120.29828 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4866 -2.6364 -0.0022 12 6 6.1604 -3.8036 -0.0028 13 8 5.5526 -4.8564 -0.0029 14 6 7.6381 -3.8036 -0.0034 15 6 8.3371 -2.5833 -0.0028 16 6 9.6939 -2.5568 -0.0039 17 6 10.4237 -3.7605 -0.0107 18 7 11.7601 -3.7511 -0.0060 19 6 12.4510 -4.8655 -0.0078 20 6 11.8307 -6.1129 -0.0084 21 6 10.4674 -6.1957 -0.0077 22 6 9.7286 -4.9959 -0.0058 23 6 8.3268 -5.0058 -0.0046 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8745 -0.6800 -0.8911 27 1 3.6579 -3.1505 -0.8908 28 1 3.6586 -3.1502 0.8891 29 1 5.9716 -1.7964 -0.0025 30 1 7.7864 -1.6542 -0.0015 31 1 10.2146 -1.6106 -0.0038 32 1 13.5297 -4.8151 -0.0083 33 1 12.4270 -7.0134 -0.0102 34 1 9.9695 -7.1540 -0.0085 35 1 7.7885 -5.9421 -0.0055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061415172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:13 Heat of formation + Delta-G solvation = 10.680388 kcal Electronic energy + Delta-G solvation = -18781.228698 eV Core-core repulsion = 15743.726590 eV Total energy + Delta-G solvation = -3037.502108 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.14448 -39.47470 -36.89551 -35.13644 -33.80907 -32.87958 -31.27812 -30.33820 -29.85106 -25.79526 -24.22500 -24.05294 -22.35523 -20.95239 -20.84825 -18.43121 -17.92654 -17.22545 -16.84050 -16.01317 -15.32833 -15.17452 -14.72599 -14.58125 -14.31518 -14.14347 -13.73805 -13.62784 -13.37349 -13.35132 -12.63849 -12.30135 -11.87772 -11.75070 -11.49518 -11.23267 -10.91276 -10.43680 -10.35370 -9.99501 -9.84493 -9.67421 -9.34890 -9.13217 -8.71963 -8.62785 -8.48598 -6.13084 -4.13539 -0.03387 0.38155 1.63761 2.26091 3.23899 3.31412 3.31614 3.32572 3.41711 3.87626 3.93423 4.27535 4.35844 4.36694 4.53283 4.66612 4.74118 4.86244 4.94024 5.15091 5.19762 5.44873 5.59222 5.63896 5.73192 5.94831 6.00465 6.12308 6.15770 6.18110 6.45687 6.51334 6.64870 7.08522 7.19066 7.55569 7.63414 7.78667 8.38416 8.44894 8.91078 9.46792 10.99927 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.040139 B = 0.003291 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.412642 B = 8505.458516 C = 9182.424418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.129 3.871 11 N -0.718 5.718 12 C 0.549 3.451 13 O -0.541 6.541 14 C -0.126 4.126 15 C -0.074 4.074 16 C -0.099 4.099 17 C 0.140 3.860 18 N -0.478 5.478 19 C 0.137 3.863 20 C -0.183 4.183 21 C -0.045 4.045 22 C -0.113 4.113 23 C -0.030 4.030 24 H 0.265 0.735 25 H 0.023 0.977 26 H 0.018 0.982 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.396 0.604 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.538 -8.709 -0.001 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.007 3.993 11 N -0.368 5.368 12 C 0.335 3.665 13 O -0.420 6.420 14 C -0.129 4.129 15 C -0.094 4.094 16 C -0.117 4.117 17 C 0.019 3.981 18 N -0.186 5.186 19 C -0.036 4.036 20 C -0.202 4.202 21 C -0.071 4.071 22 C -0.115 4.115 23 C -0.049 4.049 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.231 0.769 30 H 0.154 0.846 31 H 0.159 0.841 32 H 0.177 0.823 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 25.216 -8.438 0.005 26.590 hybrid contribution 0.161 0.534 -0.023 0.558 sum 25.377 -7.904 -0.017 26.579 Atomic orbital electron populations 1.69898 1.06301 1.27098 1.50306 1.25002 0.94771 0.99166 0.94336 0.86753 0.80276 0.83530 0.78530 1.20191 1.21245 1.19055 1.20903 0.88573 0.94931 1.51794 0.90578 1.19807 0.98103 0.91226 0.96909 1.21580 0.75460 1.00354 1.01891 1.46274 1.09401 1.07686 1.73443 1.18163 0.86532 0.84473 0.77326 1.90768 1.69729 1.31167 1.50379 1.20130 0.93909 0.94000 1.04848 1.21044 0.94246 0.97519 0.96606 1.20683 0.93216 0.97139 1.00671 1.19007 0.89590 0.92677 0.96845 1.68070 1.06738 1.31033 1.12749 1.23029 1.00565 0.87621 0.92361 1.21899 0.95471 0.99687 1.03192 1.21588 0.94257 0.97733 0.93564 1.18824 0.94409 0.94342 1.03946 1.21461 0.91773 0.98655 0.93056 0.92513 0.95925 0.96358 0.91670 0.91637 0.76932 0.84616 0.84099 0.82284 0.84313 0.83982 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 10 C 0.13 2.59 5.61 -4.04 -0.02 2.57 16 11 N -0.72 -11.73 5.50 -61.27 -0.34 -12.07 16 12 C 0.55 9.07 7.77 -12.37 -0.10 8.97 16 13 O -0.54 -10.78 16.31 5.31 0.09 -10.69 16 14 C -0.13 -1.66 5.87 -104.99 -0.62 -2.28 16 15 C -0.07 -0.81 9.44 -39.58 -0.37 -1.19 16 16 C -0.10 -1.06 9.95 -39.53 -0.39 -1.45 16 17 C 0.14 1.63 6.61 -84.78 -0.56 1.07 16 18 N -0.48 -5.27 10.33 -10.92 -0.11 -5.39 16 19 C 0.14 1.09 11.15 -17.46 -0.19 0.89 16 20 C -0.18 -1.24 10.03 -39.78 -0.40 -1.64 16 21 C -0.05 -0.37 9.89 -39.17 -0.39 -0.76 16 22 C -0.11 -1.25 5.74 -106.82 -0.61 -1.86 16 23 C -0.03 -0.36 9.35 -38.74 -0.36 -0.72 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 26 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 27 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.40 5.33 6.46 -40.82 -0.26 5.06 16 30 H 0.14 1.21 6.35 -52.49 -0.33 0.88 16 31 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.16 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.15 1.68 7.62 -52.49 -0.40 1.28 16 LS Contribution 305.01 15.07 4.60 4.60 Total: -1.00 -33.67 305.01 -8.11 -41.78 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -3.89 Total: 2.01 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -4.56 Total: -10.00 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.32 Total: -43.86 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.67 -8.11 -41.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061415172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.464 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds