Wall clock time and date at job start Mon Mar 30 2020 01:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86797 * 120.00322 * 2 1 4 4 H 1.48496 * 109.47055 * 270.00056 * 3 2 1 5 5 H 1.48506 * 109.46863 * 30.00127 * 3 2 1 6 6 H 1.48497 * 109.46974 * 149.99662 * 3 2 1 7 7 C 1.38760 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99754 * 0.02562 * 7 2 1 9 9 O 1.34917 * 119.99960 * 180.02562 * 7 2 1 10 10 C 1.34310 * 116.99874 * 180.02562 * 9 7 2 11 11 O 1.21203 * 120.00333 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99651 * 180.02562 * 10 9 7 13 13 C 1.53006 * 109.47109 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47112 * 179.97438 * 13 12 10 15 15 C 1.39370 * 119.51084 * 270.29002 * 14 13 12 16 16 C 1.36098 * 120.99091 * 180.28202 * 15 14 13 17 17 C 1.40536 * 119.65063 * 359.71066 * 16 15 14 18 18 C 1.40540 * 121.28217 * 180.02562 * 17 16 15 19 19 C 1.36091 * 119.65665 * 180.02562 * 18 17 16 20 20 C 1.39376 * 120.98533 * 359.95297 * 19 18 17 21 21 C 1.36089 * 120.99181 * 0.02562 * 20 19 18 22 22 C 1.40540 * 119.65387 * 0.02562 * 21 20 19 23 23 C 1.36095 * 119.49925 * 90.00304 * 14 13 12 24 24 H 0.96994 * 119.99375 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47608 * 59.99803 * 12 10 9 26 26 H 1.09000 * 109.47451 * 300.00005 * 12 10 9 27 27 H 1.09006 * 109.46637 * 59.99760 * 13 12 10 28 28 H 1.09000 * 109.47090 * 300.00375 * 13 12 10 29 29 H 1.07998 * 119.50525 * 359.97438 * 15 14 13 30 30 H 1.07997 * 120.17524 * 179.73800 * 16 15 14 31 31 H 1.08002 * 120.17303 * 0.02639 * 18 17 16 32 32 H 1.07998 * 119.50902 * 179.97438 * 19 18 17 33 33 H 1.08007 * 119.50474 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.17251 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.17715 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0463 -1.4000 5 1 1.4460 2.6526 0.7001 6 1 3.5460 1.4400 0.7001 7 6 2.0082 -1.2017 -0.0005 8 1 1.4681 -2.1370 -0.0014 9 8 3.3574 -1.2018 0.0000 10 6 3.9670 -2.3986 -0.0011 11 8 3.3069 -3.4150 -0.0020 12 6 5.4720 -2.4774 0.0000 13 6 5.9058 -3.9447 -0.0010 14 6 7.4107 -4.0236 -0.0005 15 6 8.0970 -4.0525 -1.2132 16 6 9.4553 -4.1292 -1.2480 17 6 10.1802 -4.1741 -0.0448 18 6 11.5834 -4.2530 -0.0408 19 6 12.2520 -4.2952 1.1438 20 6 11.5660 -4.2604 2.3566 21 6 10.2078 -4.1837 2.3914 22 6 9.4827 -4.1393 1.1883 23 6 8.0795 -4.0596 1.1842 24 1 -0.4849 0.8400 0.0004 25 1 5.8611 -1.9845 0.8908 26 1 5.8625 -1.9822 -0.8890 27 1 5.5166 -4.4380 -0.8918 28 1 5.5153 -4.4396 0.8882 29 1 7.5423 -4.0184 -2.1392 30 1 9.9735 -4.1551 -2.1952 31 1 12.1283 -4.2800 -0.9729 32 1 13.3303 -4.3562 1.1442 33 1 12.1208 -4.2947 3.2827 34 1 9.6897 -4.1571 3.3387 35 1 7.5346 -4.0323 2.1163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062477894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:39 Heat of formation + Delta-G solvation = -50.044038 kcal Electronic energy + Delta-G solvation = -18824.287645 eV Core-core repulsion = 15751.859577 eV Total energy + Delta-G solvation = -3072.428067 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51874 -39.18986 -37.17658 -35.46649 -33.46161 -32.44856 -32.25663 -29.92028 -29.07181 -26.00860 -24.29030 -23.37780 -22.06832 -21.62436 -19.59274 -17.94385 -17.48007 -17.09823 -16.72308 -15.91991 -15.27570 -14.95411 -14.79216 -14.31217 -14.01530 -13.74869 -13.63118 -13.43376 -12.93445 -12.74226 -12.43371 -12.32300 -11.98316 -11.70101 -11.26301 -11.11594 -11.05403 -10.91221 -10.72721 -10.44867 -10.34534 -10.07140 -9.68428 -9.16450 -8.66293 -8.61393 -7.98637 -6.35112 -4.10758 0.41754 0.88308 1.94193 2.85016 3.15932 3.25374 3.37374 3.43963 3.96267 4.17929 4.27072 4.45492 4.68622 4.74047 4.86596 4.93562 5.09956 5.10825 5.17600 5.25183 5.34421 5.35885 5.44637 5.64074 5.77710 5.83898 5.95605 6.01308 6.12459 6.16638 6.31088 6.34603 6.43874 6.48806 6.63352 6.71313 6.90386 7.76793 8.05872 8.64540 9.03750 9.71565 10.73619 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.032673 B = 0.003357 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.772420 B = 8338.209536 C = 8553.498869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.382 4.382 8 H 0.109 0.891 9 O -0.254 6.254 10 C 0.408 3.592 11 O -0.542 6.542 12 C -0.099 4.099 13 C -0.070 4.070 14 C -0.069 4.069 15 C -0.105 4.105 16 C -0.109 4.109 17 C -0.057 4.057 18 C -0.106 4.106 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.105 4.105 22 C -0.049 4.049 23 C -0.106 4.106 24 H 0.279 0.721 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.331 -6.670 1.173 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.458 4.458 8 H 0.126 0.874 9 O -0.163 6.163 10 C 0.254 3.746 11 O -0.437 6.437 12 C -0.137 4.137 13 C -0.107 4.107 14 C -0.069 4.069 15 C -0.123 4.123 16 C -0.127 4.127 17 C -0.057 4.057 18 C -0.124 4.124 19 C -0.141 4.141 20 C -0.140 4.140 21 C -0.122 4.122 22 C -0.049 4.049 23 C -0.124 4.124 24 H 0.089 0.911 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 23.953 -6.789 1.177 24.924 hybrid contribution 0.193 0.787 -0.016 0.810 sum 24.146 -6.002 1.161 24.908 Atomic orbital electron populations 1.69612 1.05713 1.28342 1.47946 1.24556 0.95011 0.98671 0.95628 0.86218 0.80292 0.81528 0.78908 1.19883 1.20785 1.18415 1.20655 0.76300 0.96921 1.51889 0.87359 1.83526 1.23900 1.31568 1.77263 1.23005 0.90658 0.82559 0.78354 1.90595 1.67198 1.36281 1.49596 1.21100 0.90257 0.97554 1.04754 1.20438 0.89550 0.95800 1.04901 1.19700 0.96024 0.98194 0.92996 1.20872 0.94290 0.99224 0.97894 1.20998 0.94233 1.00545 0.96940 1.18108 0.93526 1.00992 0.93062 1.21019 0.92964 1.00002 0.98402 1.20817 0.99915 1.00808 0.92543 1.20828 0.94504 1.00645 0.97990 1.21064 0.94351 0.99649 0.97183 1.18104 0.93541 1.00288 0.92923 1.20979 0.92578 1.00503 0.98315 0.91086 0.88937 0.88910 0.89884 0.89919 0.85611 0.85604 0.85777 0.86228 0.86164 0.85570 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.26 13.96 55.48 0.77 -25.48 16 2 C 0.06 1.88 5.49 -17.52 -0.10 1.78 16 3 Si 0.91 21.62 28.62 -169.99 -4.86 16.76 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.38 -11.49 10.10 30.93 0.31 -11.18 16 8 H 0.11 3.58 7.09 -52.48 -0.37 3.21 16 9 O -0.25 -6.76 8.58 -20.69 -0.18 -6.94 16 10 C 0.41 9.51 7.91 36.01 0.28 9.79 16 11 O -0.54 -14.21 15.22 -19.05 -0.29 -14.50 16 12 C -0.10 -1.62 5.79 -27.88 -0.16 -1.78 16 13 C -0.07 -1.00 4.60 -27.88 -0.13 -1.13 16 14 C -0.07 -0.87 5.10 -104.97 -0.54 -1.40 16 15 C -0.10 -1.20 9.59 -39.93 -0.38 -1.58 16 16 C -0.11 -1.15 9.77 -39.48 -0.39 -1.54 16 17 C -0.06 -0.64 5.74 -106.84 -0.61 -1.25 16 18 C -0.11 -0.99 9.77 -39.49 -0.39 -1.38 16 19 C -0.12 -1.06 9.95 -39.93 -0.40 -1.45 16 20 C -0.12 -1.07 9.95 -39.93 -0.40 -1.47 16 21 C -0.10 -1.05 9.77 -39.49 -0.39 -1.43 16 22 C -0.05 -0.57 5.74 -106.83 -0.61 -1.18 16 23 C -0.11 -1.27 9.37 -39.48 -0.37 -1.64 16 24 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 26 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 28 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 29 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 310.48 15.07 4.68 4.68 Total: -1.00 -33.66 310.48 -8.28 -41.94 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.15 Total: 0.40 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -4.26 Total: -16.85 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.77 Total: -25.48 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.47 Total: -21.44 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.86 Total: 16.76 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.66 -8.28 -41.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062477894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.107 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds