Wall clock time and date at job start Mon Mar 30 2020 01:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86797 * 120.00322 * 2 1 4 4 H 1.48496 * 109.47055 * 270.00056 * 3 2 1 5 5 H 1.48506 * 109.46863 * 30.00127 * 3 2 1 6 6 H 1.48497 * 109.46974 * 149.99662 * 3 2 1 7 7 C 1.38760 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99754 * 0.02562 * 7 2 1 9 9 O 1.34917 * 119.99960 * 180.02562 * 7 2 1 10 10 C 1.34310 * 116.99874 * 180.02562 * 9 7 2 11 11 O 1.21203 * 120.00333 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99651 * 180.02562 * 10 9 7 13 13 C 1.53006 * 109.47109 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47112 * 179.97438 * 13 12 10 15 15 C 1.39370 * 119.51084 * 270.29002 * 14 13 12 16 16 C 1.36098 * 120.99091 * 180.28202 * 15 14 13 17 17 C 1.40536 * 119.65063 * 359.71066 * 16 15 14 18 18 C 1.40540 * 121.28217 * 180.02562 * 17 16 15 19 19 C 1.36091 * 119.65665 * 180.02562 * 18 17 16 20 20 C 1.39376 * 120.98533 * 359.95297 * 19 18 17 21 21 C 1.36089 * 120.99181 * 0.02562 * 20 19 18 22 22 C 1.40540 * 119.65387 * 0.02562 * 21 20 19 23 23 C 1.36095 * 119.49925 * 90.00304 * 14 13 12 24 24 H 0.96994 * 119.99375 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47608 * 59.99803 * 12 10 9 26 26 H 1.09000 * 109.47451 * 300.00005 * 12 10 9 27 27 H 1.09006 * 109.46637 * 59.99760 * 13 12 10 28 28 H 1.09000 * 109.47090 * 300.00375 * 13 12 10 29 29 H 1.07998 * 119.50525 * 359.97438 * 15 14 13 30 30 H 1.07997 * 120.17524 * 179.73800 * 16 15 14 31 31 H 1.08002 * 120.17303 * 0.02639 * 18 17 16 32 32 H 1.07998 * 119.50902 * 179.97438 * 19 18 17 33 33 H 1.08007 * 119.50474 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.17251 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.17715 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0463 -1.4000 5 1 1.4460 2.6526 0.7001 6 1 3.5460 1.4400 0.7001 7 6 2.0082 -1.2017 -0.0005 8 1 1.4681 -2.1370 -0.0014 9 8 3.3574 -1.2018 0.0000 10 6 3.9670 -2.3986 -0.0011 11 8 3.3069 -3.4150 -0.0020 12 6 5.4720 -2.4774 0.0000 13 6 5.9058 -3.9447 -0.0010 14 6 7.4107 -4.0236 -0.0005 15 6 8.0970 -4.0525 -1.2132 16 6 9.4553 -4.1292 -1.2480 17 6 10.1802 -4.1741 -0.0448 18 6 11.5834 -4.2530 -0.0408 19 6 12.2520 -4.2952 1.1438 20 6 11.5660 -4.2604 2.3566 21 6 10.2078 -4.1837 2.3914 22 6 9.4827 -4.1393 1.1883 23 6 8.0795 -4.0596 1.1842 24 1 -0.4849 0.8400 0.0004 25 1 5.8611 -1.9845 0.8908 26 1 5.8625 -1.9822 -0.8890 27 1 5.5166 -4.4380 -0.8918 28 1 5.5153 -4.4396 0.8882 29 1 7.5423 -4.0184 -2.1392 30 1 9.9735 -4.1551 -2.1952 31 1 12.1283 -4.2800 -0.9729 32 1 13.3303 -4.3562 1.1442 33 1 12.1208 -4.2947 3.2827 34 1 9.6897 -4.1571 3.3387 35 1 7.5346 -4.0323 2.1163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062477894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:38 Heat of formation + Delta-G solvation = -68.102728 kcal Electronic energy + Delta-G solvation = -18825.070728 eV Core-core repulsion = 15751.859577 eV Total energy + Delta-G solvation = -3073.211151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40218 -41.05206 -38.16046 -37.33791 -34.58356 -34.44607 -33.30704 -30.82432 -30.01564 -27.84703 -25.71312 -24.16160 -22.82342 -22.68617 -21.33487 -20.14875 -18.72879 -18.14524 -17.77962 -17.13118 -16.92660 -16.58400 -15.88698 -15.57963 -15.23779 -14.80935 -14.63077 -14.51275 -14.17497 -14.09794 -14.02994 -13.47743 -13.25354 -13.15943 -12.64083 -12.39853 -12.27013 -12.07692 -11.97580 -11.85966 -11.77920 -11.63819 -11.13488 -10.84129 -10.83971 -9.42751 -8.75931 -8.55481 -6.42528 -0.34266 0.09034 1.16564 1.29556 1.33845 1.53126 1.58334 2.05595 2.27216 2.48361 2.90525 3.21649 3.69574 3.82497 3.98348 3.99266 4.07912 4.11482 4.29318 4.36483 4.45876 4.50243 4.51318 4.64227 4.67931 4.86684 4.94664 5.05184 5.15288 5.22534 5.36820 5.38947 5.49245 5.60820 5.68822 5.74292 5.89143 5.96801 6.14698 6.54006 6.82232 7.59216 8.57765 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.032673 B = 0.003357 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.772420 B = 8338.209536 C = 8553.498869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.250 1.250 7 C -0.410 4.410 8 H 0.056 0.944 9 O -0.261 6.261 10 C 0.408 3.592 11 O -0.576 6.576 12 C -0.086 4.086 13 C -0.060 4.060 14 C -0.079 4.079 15 C -0.120 4.120 16 C -0.106 4.106 17 C -0.075 4.075 18 C -0.114 4.114 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.069 4.069 23 C -0.113 4.113 24 H 0.289 0.711 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.136 0.864 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.036 -5.332 1.140 28.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.173 1.173 7 C -0.486 4.486 8 H 0.074 0.926 9 O -0.170 6.170 10 C 0.256 3.744 11 O -0.472 6.472 12 C -0.123 4.123 13 C -0.098 4.098 14 C -0.079 4.079 15 C -0.138 4.138 16 C -0.123 4.123 17 C -0.075 4.075 18 C -0.132 4.132 19 C -0.141 4.141 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.069 4.069 23 C -0.131 4.131 24 H 0.099 0.901 25 H 0.134 0.866 26 H 0.138 0.862 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.153 0.847 30 H 0.169 0.831 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 27.657 -5.481 1.144 28.218 hybrid contribution -0.860 0.192 0.036 0.882 sum 26.797 -5.289 1.180 27.340 Atomic orbital electron populations 1.69713 1.07651 1.30236 1.48315 1.25619 0.96002 1.02835 0.94125 0.85049 0.78983 0.75620 0.79877 1.18322 1.19006 1.17341 1.20334 0.77954 0.95729 1.54617 0.92607 1.83542 1.21883 1.33126 1.78448 1.24546 0.93256 0.81171 0.75444 1.90579 1.68793 1.37335 1.50542 1.21280 0.84403 0.99580 1.07031 1.20299 0.91281 0.94207 1.03974 1.19490 0.94393 1.00122 0.93921 1.21001 0.94947 1.00036 0.97777 1.21288 0.93930 0.99205 0.97897 1.18442 0.94709 1.01245 0.93123 1.21336 0.92291 0.99651 0.99893 1.21221 1.01435 0.99357 0.92128 1.21207 0.94230 0.99094 0.99342 1.21293 0.95160 1.00322 0.97197 1.18340 0.93508 1.01015 0.94030 1.21104 0.93161 1.00480 0.98357 0.90084 0.86600 0.86247 0.90752 0.91071 0.84660 0.83127 0.83500 0.83498 0.83766 0.84477 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.37 13.96 21.63 0.30 -56.07 16 2 C 0.01 0.81 5.49 84.88 0.47 1.28 16 3 Si 0.99 43.99 28.62 68.60 1.96 45.96 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.41 -25.70 10.10 67.94 0.69 -25.01 16 8 H 0.06 3.98 7.09 -2.91 -0.02 3.96 16 9 O -0.26 -14.05 8.58 14.90 0.13 -13.92 16 10 C 0.41 19.34 7.91 71.24 0.56 19.90 16 11 O -0.58 -31.61 15.22 20.79 0.32 -31.30 16 12 C -0.09 -2.72 5.79 29.85 0.17 -2.54 16 13 C -0.06 -1.73 4.60 29.85 0.14 -1.59 16 14 C -0.08 -1.93 5.10 -20.09 -0.10 -2.03 16 15 C -0.12 -2.57 9.59 22.04 0.21 -2.36 16 16 C -0.11 -2.00 9.77 22.33 0.22 -1.79 16 17 C -0.08 -1.54 5.74 -21.30 -0.12 -1.67 16 18 C -0.11 -1.80 9.77 22.33 0.22 -1.58 16 19 C -0.12 -1.71 9.95 22.04 0.22 -1.49 16 20 C -0.12 -1.80 9.95 22.04 0.22 -1.58 16 21 C -0.12 -2.24 9.77 22.33 0.22 -2.02 16 22 C -0.07 -1.53 5.74 -21.29 -0.12 -1.65 16 23 C -0.11 -2.64 9.37 22.33 0.21 -2.43 16 24 H 0.29 15.94 8.31 -92.71 -0.77 15.17 16 25 H 0.12 3.21 8.14 -2.39 -0.02 3.20 16 26 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 27 H 0.07 2.23 8.04 -2.38 -0.02 2.21 16 28 H 0.07 2.17 8.03 -2.39 -0.02 2.15 16 29 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 31 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -76.14 310.48 6.99 -69.15 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 1.09 Total: 12.74 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 3.19 Total: -26.56 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.30 Total: -56.07 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: 0.44 Total: -45.22 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.96 Total: 45.96 kcal Total: -76.14 6.99 -69.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062477894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.045 kcal (2) G-P(sol) polarization free energy of solvation -76.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds