Wall clock time and date at job start Mon Mar 30 2020 01:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86801 * 120.00236 * 2 1 4 4 H 1.48502 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47056 * 299.99852 * 3 2 1 6 6 H 1.48498 * 109.47334 * 59.99997 * 3 2 1 7 7 C 1.39028 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00471 * 171.39507 * 7 2 1 9 9 N 1.36883 * 119.99854 * 351.67222 * 7 2 1 10 10 C 1.34779 * 119.99794 * 151.59540 * 9 7 2 11 11 O 1.21635 * 120.00267 * 355.21807 * 10 9 7 12 12 C 1.47459 * 119.99868 * 175.22431 * 10 9 7 13 13 C 1.40303 * 119.83746 * 42.04067 * 12 10 9 14 14 C 1.36180 * 120.37073 * 179.97438 * 13 12 10 15 15 C 1.39940 * 119.96554 * 0.02562 * 14 13 12 16 16 C 1.46242 * 133.82175 * 179.97438 * 15 14 13 17 17 C 1.34471 * 107.03543 * 180.02562 * 16 15 14 18 18 N 1.36566 * 109.97985 * 359.97438 * 17 16 15 19 19 H 0.96993 * 125.07795 * 180.02562 * 18 17 16 20 20 C 1.37843 * 109.85215 * 0.02562 * 18 17 16 21 21 C 1.38659 * 133.36607 * 180.35358 * 20 18 17 22 22 C 1.46491 * 120.00199 * 331.59040 * 9 7 2 23 23 C 1.53005 * 117.49828 * 313.08589 * 22 9 7 24 24 C 1.52997 * 60.00229 * 252.50906 * 23 22 9 25 25 H 0.96996 * 119.99699 * 5.01080 * 1 2 3 26 26 H 1.08004 * 119.81561 * 0.02562 * 13 12 10 27 27 H 1.07992 * 120.01290 * 180.02562 * 14 13 12 28 28 H 1.08003 * 126.48303 * 0.02562 * 16 15 14 29 29 H 1.08000 * 125.01224 * 179.97438 * 17 16 15 30 30 H 1.08004 * 120.17198 * 359.92331 * 21 20 18 31 31 H 1.08995 * 115.55546 * 98.78918 * 22 9 7 32 32 H 1.09004 * 117.49734 * 359.97438 * 23 22 9 33 33 H 1.08997 * 117.50105 * 145.01903 * 23 22 9 34 34 H 1.09001 * 117.50189 * 252.51757 * 24 23 22 35 35 H 1.08998 * 117.52196 * 107.47920 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.7078 1.3463 -0.0006 5 1 1.8891 2.3964 -1.2125 6 1 1.8891 2.3964 1.2125 7 6 2.0089 -1.2040 0.0005 8 1 3.0798 -1.2094 -0.1394 9 7 1.3352 -2.3831 0.1728 10 6 1.8184 -3.5201 -0.3660 11 8 2.8046 -3.4851 -1.0772 12 6 1.1515 -4.8067 -0.0932 13 6 -0.2494 -4.8828 -0.1039 14 6 -0.8766 -6.0655 0.1460 15 6 -0.1226 -7.2132 0.4159 16 6 -0.4658 -8.6023 0.7178 17 6 0.6914 -9.2658 0.8885 18 7 1.7463 -8.4150 0.7200 19 1 2.6807 -8.6643 0.7938 20 6 1.2849 -7.1490 0.4295 21 6 1.9159 -5.9425 0.1673 22 6 0.0892 -2.4092 0.9427 23 6 0.0755 -1.6827 2.2892 24 6 0.0802 -3.2120 2.2452 25 1 -0.4849 0.8368 -0.0734 26 1 -0.8337 -3.9987 -0.3122 27 1 -1.9552 -6.1176 0.1360 28 1 -1.4604 -9.0170 0.7899 29 1 0.7743 -10.3165 1.1242 30 1 2.9943 -5.8822 0.1697 31 1 -0.8278 -2.3953 0.3537 32 1 0.9937 -1.1857 2.6023 33 1 -0.8507 -1.1906 2.5861 34 1 -0.8429 -3.7261 2.5130 35 1 1.0012 -3.7212 2.5289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:46 Heat of formation + Delta-G solvation = 69.087295 kcal Electronic energy + Delta-G solvation = -20343.887727 eV Core-core repulsion = 17308.918333 eV Total energy + Delta-G solvation = -3034.969394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.93124 -38.95458 -36.22641 -35.83481 -32.96726 -31.59555 -31.12858 -29.15788 -28.61976 -25.21710 -22.75416 -22.33988 -21.42426 -21.02132 -20.47884 -19.03834 -17.73816 -16.91670 -16.27888 -15.31745 -14.96796 -14.76957 -14.25005 -14.05859 -13.77208 -13.64695 -13.32136 -13.08164 -12.73880 -12.55664 -12.06694 -11.57057 -11.15135 -11.10476 -10.97405 -10.63869 -10.61453 -10.46188 -10.29407 -9.76155 -9.43623 -9.31777 -8.82225 -8.39577 -7.79649 -7.66363 -7.41304 -6.31111 -3.88822 1.36140 1.97816 2.86425 3.16732 3.26017 3.28389 3.32921 3.88784 4.12582 4.46303 4.79579 4.82537 4.94260 5.11781 5.18154 5.40504 5.55060 5.68339 5.74510 5.88623 5.91133 5.96774 6.15897 6.19688 6.32814 6.40823 6.41965 6.77833 6.86850 6.92046 7.00288 7.03426 7.07982 7.20756 7.48223 7.57094 7.68638 8.16164 8.50728 9.18417 9.40170 9.99452 10.74468 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035737 B = 0.005357 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.311982 B = 5225.570677 C = 5627.868621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.042 3.958 3 Si 0.921 3.079 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.309 4.309 8 H 0.096 0.904 9 N -0.408 5.408 10 C 0.488 3.512 11 O -0.584 6.584 12 C -0.065 4.065 13 C -0.107 4.107 14 C -0.086 4.086 15 C -0.105 4.105 16 C -0.210 4.210 17 C 0.043 3.957 18 N -0.597 5.597 19 H 0.413 0.587 20 C 0.086 3.914 21 C -0.093 4.093 22 C 0.130 3.870 23 C -0.143 4.143 24 C -0.212 4.212 25 H 0.268 0.732 26 H 0.133 0.867 27 H 0.120 0.880 28 H 0.142 0.858 29 H 0.165 0.835 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.203 -12.902 4.833 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.163 4.163 3 Si 0.748 3.252 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.436 4.436 8 H 0.114 0.886 9 N -0.125 5.125 10 C 0.278 3.722 11 O -0.470 6.470 12 C -0.070 4.070 13 C -0.127 4.127 14 C -0.105 4.105 15 C -0.109 4.109 16 C -0.235 4.235 17 C -0.084 4.084 18 N -0.200 5.200 19 H 0.249 0.751 20 C -0.020 4.020 21 C -0.115 4.115 22 C 0.025 3.975 23 C -0.180 4.180 24 C -0.251 4.251 25 H 0.078 0.922 26 H 0.151 0.849 27 H 0.138 0.862 28 H 0.160 0.840 29 H 0.182 0.818 30 H 0.139 0.861 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.759 -12.731 4.567 13.804 hybrid contribution 0.666 0.733 0.073 0.993 sum -2.093 -11.998 4.640 13.033 Atomic orbital electron populations 1.69848 1.05879 1.27616 1.47078 1.25330 0.95477 0.99453 0.96030 0.85934 0.79956 0.81509 0.77785 1.19264 1.20655 1.20645 1.19586 0.92961 0.82017 1.49075 0.88585 1.42982 1.20326 1.06446 1.42724 1.17899 0.86914 0.83559 0.83848 1.90626 1.28868 1.86616 1.40852 1.19858 0.93491 0.93978 0.99638 1.21071 0.93607 0.97989 0.99999 1.20108 0.98944 0.90870 1.00576 1.19255 0.91967 0.94096 1.05612 1.21644 0.97588 0.92348 1.11949 1.21712 0.86610 0.95687 1.04399 1.41711 1.08445 1.07075 1.62808 0.75131 1.18094 0.93489 0.85984 1.04435 1.19964 0.99396 0.89060 1.03112 1.21163 0.89072 1.01471 0.85768 1.22745 1.02138 0.92133 1.01010 1.23491 1.01901 0.95171 1.04492 0.92185 0.84930 0.86225 0.84047 0.81784 0.86074 0.87517 0.89369 0.89775 0.89508 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.43 10.69 55.50 0.59 -21.83 16 2 C 0.04 1.10 4.83 -17.45 -0.08 1.02 16 3 Si 0.92 20.56 29.57 -169.99 -5.03 15.54 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.31 -8.55 8.73 -15.00 -0.13 -8.68 16 8 H 0.10 2.80 7.55 -52.48 -0.40 2.40 16 9 N -0.41 -10.51 2.91 -108.93 -0.32 -10.83 16 10 C 0.49 12.53 7.20 -12.50 -0.09 12.44 16 11 O -0.58 -16.97 16.72 5.25 0.09 -16.88 16 12 C -0.06 -1.37 4.74 -104.95 -0.50 -1.87 16 13 C -0.11 -1.99 7.21 -39.55 -0.29 -2.27 16 14 C -0.09 -1.38 10.03 -39.68 -0.40 -1.78 16 15 C -0.10 -1.66 6.37 -105.04 -0.67 -2.33 16 16 C -0.21 -2.63 11.08 -37.70 -0.42 -3.05 16 17 C 0.04 0.46 11.81 -16.77 -0.20 0.26 16 18 N -0.60 -7.29 6.07 -10.68 -0.06 -7.36 16 19 H 0.41 3.80 8.96 -40.82 -0.37 3.43 16 20 C 0.09 1.39 7.26 -84.00 -0.61 0.78 16 21 C -0.09 -1.76 9.66 -39.01 -0.38 -2.14 16 22 C 0.13 2.90 2.17 -67.93 -0.15 2.75 16 23 C -0.14 -2.96 8.57 -26.73 -0.23 -3.19 16 24 C -0.21 -4.02 8.19 -26.73 -0.22 -4.24 16 25 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 26 H 0.13 2.49 5.47 -52.48 -0.29 2.20 16 27 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 29 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 31 H 0.11 2.41 6.62 -51.93 -0.34 2.06 16 32 H 0.09 1.97 7.95 -51.93 -0.41 1.56 16 33 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 LS Contribution 296.61 15.07 4.47 4.47 Total: -1.00 -31.91 296.61 -8.51 -40.41 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -3.90 Total: 8.77 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -4.35 Total: -12.29 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.21 Total: -40.02 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.09 Total: -16.88 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.91 -8.51 -40.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.502 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds