Wall clock time and date at job start Mon Mar 30 2020 01:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86801 * 120.00236 * 2 1 4 4 H 1.48502 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47056 * 299.99852 * 3 2 1 6 6 H 1.48498 * 109.47334 * 59.99997 * 3 2 1 7 7 C 1.39028 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00471 * 171.39507 * 7 2 1 9 9 N 1.36883 * 119.99854 * 351.67222 * 7 2 1 10 10 C 1.34779 * 119.99794 * 151.59540 * 9 7 2 11 11 O 1.21635 * 120.00267 * 355.21807 * 10 9 7 12 12 C 1.47459 * 119.99868 * 175.22431 * 10 9 7 13 13 C 1.40303 * 119.83746 * 42.04067 * 12 10 9 14 14 C 1.36180 * 120.37073 * 179.97438 * 13 12 10 15 15 C 1.39940 * 119.96554 * 0.02562 * 14 13 12 16 16 C 1.46242 * 133.82175 * 179.97438 * 15 14 13 17 17 C 1.34471 * 107.03543 * 180.02562 * 16 15 14 18 18 N 1.36566 * 109.97985 * 359.97438 * 17 16 15 19 19 H 0.96993 * 125.07795 * 180.02562 * 18 17 16 20 20 C 1.37843 * 109.85215 * 0.02562 * 18 17 16 21 21 C 1.38659 * 133.36607 * 180.35358 * 20 18 17 22 22 C 1.46491 * 120.00199 * 331.59040 * 9 7 2 23 23 C 1.53005 * 117.49828 * 313.08589 * 22 9 7 24 24 C 1.52997 * 60.00229 * 252.50906 * 23 22 9 25 25 H 0.96996 * 119.99699 * 5.01080 * 1 2 3 26 26 H 1.08004 * 119.81561 * 0.02562 * 13 12 10 27 27 H 1.07992 * 120.01290 * 180.02562 * 14 13 12 28 28 H 1.08003 * 126.48303 * 0.02562 * 16 15 14 29 29 H 1.08000 * 125.01224 * 179.97438 * 17 16 15 30 30 H 1.08004 * 120.17198 * 359.92331 * 21 20 18 31 31 H 1.08995 * 115.55546 * 98.78918 * 22 9 7 32 32 H 1.09004 * 117.49734 * 359.97438 * 23 22 9 33 33 H 1.08997 * 117.50105 * 145.01903 * 23 22 9 34 34 H 1.09001 * 117.50189 * 252.51757 * 24 23 22 35 35 H 1.08998 * 117.52196 * 107.47920 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.7078 1.3463 -0.0006 5 1 1.8891 2.3964 -1.2125 6 1 1.8891 2.3964 1.2125 7 6 2.0089 -1.2040 0.0005 8 1 3.0798 -1.2094 -0.1394 9 7 1.3352 -2.3831 0.1728 10 6 1.8184 -3.5201 -0.3660 11 8 2.8046 -3.4851 -1.0772 12 6 1.1515 -4.8067 -0.0932 13 6 -0.2494 -4.8828 -0.1039 14 6 -0.8766 -6.0655 0.1460 15 6 -0.1226 -7.2132 0.4159 16 6 -0.4658 -8.6023 0.7178 17 6 0.6914 -9.2658 0.8885 18 7 1.7463 -8.4150 0.7200 19 1 2.6807 -8.6643 0.7938 20 6 1.2849 -7.1490 0.4295 21 6 1.9159 -5.9425 0.1673 22 6 0.0892 -2.4092 0.9427 23 6 0.0755 -1.6827 2.2892 24 6 0.0802 -3.2120 2.2452 25 1 -0.4849 0.8368 -0.0734 26 1 -0.8337 -3.9987 -0.3122 27 1 -1.9552 -6.1176 0.1360 28 1 -1.4604 -9.0170 0.7899 29 1 0.7743 -10.3165 1.1242 30 1 2.9943 -5.8822 0.1697 31 1 -0.8278 -2.3953 0.3537 32 1 0.9937 -1.1857 2.6023 33 1 -0.8507 -1.1906 2.5861 34 1 -0.8429 -3.7261 2.5130 35 1 1.0012 -3.7212 2.5289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:45 Heat of formation + Delta-G solvation = 49.337171 kcal Electronic energy + Delta-G solvation = -20344.744156 eV Core-core repulsion = 17308.918333 eV Total energy + Delta-G solvation = -3035.825824 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.09996 -40.70928 -37.95124 -37.36848 -34.88576 -33.10954 -32.79608 -30.46424 -29.85632 -27.09986 -24.30824 -23.77575 -23.02293 -22.62262 -21.51245 -20.67817 -19.08135 -18.75924 -17.67491 -17.15135 -16.62567 -16.40494 -15.87244 -15.46246 -15.22710 -15.16993 -14.66569 -14.44934 -14.29081 -13.82923 -13.76898 -13.18916 -12.94858 -12.62844 -12.55791 -12.33910 -12.21881 -12.10962 -11.94696 -11.58341 -11.06806 -10.71671 -10.61350 -10.30249 -9.64744 -9.08186 -8.56752 -8.31042 -5.98773 0.04423 0.64703 1.36227 1.40238 1.52764 1.80846 2.13358 2.24026 2.35778 2.94012 2.99668 3.15323 3.27320 3.82674 3.94454 4.06100 4.20806 4.32370 4.38757 4.46623 4.50662 4.55700 4.80531 4.86376 4.92044 5.10196 5.13446 5.14528 5.37126 5.43273 5.44923 5.57019 5.68745 5.79659 5.89385 6.12040 6.25013 6.52759 6.77276 7.15593 7.42869 8.02129 8.72261 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035737 B = 0.005357 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.311982 B = 5225.570677 C = 5627.868621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.016 3.984 3 Si 0.981 3.019 4 H -0.278 1.278 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.350 4.350 8 H 0.064 0.936 9 N -0.417 5.417 10 C 0.475 3.525 11 O -0.639 6.639 12 C -0.097 4.097 13 C -0.116 4.116 14 C -0.076 4.076 15 C -0.110 4.110 16 C -0.227 4.227 17 C 0.072 3.928 18 N -0.589 5.589 19 H 0.427 0.573 20 C 0.070 3.930 21 C -0.098 4.098 22 C 0.112 3.888 23 C -0.144 4.144 24 C -0.173 4.173 25 H 0.275 0.725 26 H 0.123 0.877 27 H 0.152 0.848 28 H 0.170 0.830 29 H 0.217 0.783 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 -15.462 6.303 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.188 4.188 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.082 0.918 9 N -0.133 5.133 10 C 0.266 3.734 11 O -0.529 6.529 12 C -0.101 4.101 13 C -0.136 4.136 14 C -0.095 4.095 15 C -0.115 4.115 16 C -0.251 4.251 17 C -0.055 4.055 18 N -0.193 5.193 19 H 0.266 0.734 20 C -0.037 4.037 21 C -0.120 4.120 22 C 0.008 3.992 23 C -0.181 4.181 24 C -0.211 4.211 25 H 0.085 0.915 26 H 0.141 0.859 27 H 0.170 0.830 28 H 0.188 0.812 29 H 0.234 0.766 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.139 0.861 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.823 -15.305 6.068 17.156 hybrid contribution 1.290 1.322 -0.377 1.885 sum -3.533 -13.983 5.691 15.505 Atomic orbital electron populations 1.69910 1.06460 1.28700 1.45939 1.25965 0.96396 1.01615 0.94842 0.85064 0.78182 0.77738 0.78506 1.20263 1.19911 1.18790 1.19484 0.92165 0.83948 1.52151 0.91790 1.43161 1.21093 1.06024 1.42973 1.18750 0.86421 0.85329 0.82907 1.90547 1.31357 1.87788 1.43195 1.19480 0.94683 0.92157 1.03780 1.20917 0.92201 0.98986 1.01471 1.20374 1.00488 0.89822 0.98777 1.19747 0.91671 0.95766 1.04301 1.22030 0.99776 0.90448 1.12863 1.22597 0.85178 0.97315 1.00442 1.41868 1.10009 1.05796 1.61625 0.73449 1.18013 0.94089 0.86588 1.05040 1.19867 0.98736 0.90001 1.03406 1.21160 0.87344 1.04426 0.86261 1.22729 1.01834 0.93589 0.99991 1.23417 1.02902 0.93954 1.00801 0.91511 0.85906 0.83007 0.81208 0.76613 0.87412 0.88050 0.91564 0.88093 0.86083 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.78 10.69 21.68 0.23 -45.55 16 2 C 0.02 0.88 4.83 84.95 0.41 1.29 16 3 Si 0.98 43.11 29.57 68.60 2.03 45.14 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 7 C -0.35 -20.61 8.73 84.09 0.73 -19.88 16 8 H 0.06 4.07 7.55 -2.91 -0.02 4.05 16 9 N -0.42 -22.82 2.91 -616.77 -1.79 -24.62 16 10 C 0.47 26.19 7.20 86.67 0.62 26.81 16 11 O -0.64 -40.39 16.72 -4.14 -0.07 -40.46 16 12 C -0.10 -4.26 4.74 -20.07 -0.10 -4.36 16 13 C -0.12 -4.33 7.21 22.29 0.16 -4.17 16 14 C -0.08 -2.28 10.03 22.20 0.22 -2.06 16 15 C -0.11 -3.15 6.37 -20.13 -0.13 -3.28 16 16 C -0.23 -4.55 11.08 23.49 0.26 -4.29 16 17 C 0.07 1.13 11.81 83.09 0.98 2.11 16 18 N -0.59 -12.36 6.07 -187.70 -1.14 -13.50 16 19 H 0.43 6.53 8.96 -92.71 -0.83 5.70 16 20 C 0.07 2.16 7.26 38.95 0.28 2.44 16 21 C -0.10 -3.83 9.66 22.64 0.22 -3.61 16 22 C 0.11 5.12 2.17 45.00 0.10 5.22 16 23 C -0.14 -5.99 8.57 30.59 0.26 -5.73 16 24 C -0.17 -6.46 8.19 30.60 0.25 -6.21 16 25 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 26 H 0.12 4.73 5.47 -2.91 -0.02 4.72 16 27 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 28 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.22 1.17 8.06 -2.91 -0.02 1.15 16 30 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 31 H 0.10 4.69 6.62 -2.39 -0.02 4.67 16 32 H 0.07 3.04 7.95 -2.38 -0.02 3.02 16 33 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 34 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 35 H 0.07 2.85 8.09 -2.39 -0.02 2.83 16 Total: -1.00 -75.02 296.61 3.83 -71.19 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.29 Total: 23.51 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 4.28 Total: -15.71 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -2.70 Total: -83.66 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.07 Total: -40.46 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -75.02 3.83 -71.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.523 kcal (2) G-P(sol) polarization free energy of solvation -75.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds