Wall clock time and date at job start Mon Mar 30 2020 01:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 120.00078 * 2 1 4 4 H 1.08006 * 119.99745 * 204.89189 * 3 2 1 5 5 C 1.38804 * 120.00216 * 24.89002 * 3 2 1 6 6 N 1.31626 * 119.99963 * 5.60066 * 5 3 2 7 7 Si 1.86800 * 120.00409 * 185.60018 * 5 3 2 8 8 H 1.48503 * 109.47009 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47281 * 120.00033 * 7 5 3 10 10 H 1.48496 * 109.47287 * 240.00320 * 7 5 3 11 11 C 1.46505 * 120.00051 * 180.02562 * 2 1 3 12 12 C 1.50694 * 109.47433 * 89.99502 * 11 2 1 13 13 O 1.21287 * 120.00183 * 0.02562 * 12 11 2 14 14 N 1.34779 * 120.00215 * 180.02562 * 12 11 2 15 15 C 1.39912 * 120.00388 * 184.33219 * 14 12 11 16 16 C 1.38841 * 120.05013 * 144.83324 * 15 14 12 17 17 C 1.38349 * 119.96025 * 179.97438 * 16 15 14 18 18 F 1.35095 * 119.97802 * 179.97438 * 17 16 15 19 19 C 1.38469 * 120.04085 * 0.02562 * 17 16 15 20 20 C 1.38471 * 120.09446 * 359.97438 * 19 17 16 21 21 F 1.35096 * 119.98443 * 179.97438 * 20 19 17 22 22 C 1.38349 * 120.04165 * 0.02562 * 20 19 17 23 23 H 1.09004 * 109.46729 * 275.02095 * 1 2 3 24 24 H 1.08998 * 109.47082 * 35.01881 * 1 2 3 25 25 H 1.08993 * 109.47278 * 155.02071 * 1 2 3 26 26 H 0.96991 * 119.99924 * 180.02562 * 6 5 3 27 27 H 1.09007 * 109.46553 * 329.99191 * 11 2 1 28 28 H 1.09000 * 109.46732 * 210.00220 * 11 2 1 29 29 H 0.97003 * 119.99591 * 4.33009 * 14 12 11 30 30 H 1.08004 * 120.01614 * 359.70450 * 16 15 14 31 31 H 1.07997 * 119.95521 * 180.02562 * 19 17 16 32 32 H 1.08000 * 120.02440 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1545 1.2293 -0.3937 5 6 1.5524 2.3322 0.5059 6 7 0.3729 2.2587 1.0855 7 14 2.4225 3.9791 0.3644 8 1 3.7250 3.7932 -0.3242 9 1 1.5794 4.9188 -0.4176 10 1 2.6545 4.5347 1.7218 11 6 2.1975 -1.2688 -0.0006 12 6 2.4486 -1.7033 -1.4215 13 8 2.0549 -1.0202 -2.3431 14 7 3.1107 -2.8510 -1.6683 15 6 3.4235 -3.2093 -2.9841 16 6 4.6120 -3.8716 -3.2605 17 6 4.9191 -4.2254 -4.5622 18 9 6.0758 -4.8694 -4.8317 19 6 4.0423 -3.9190 -5.5892 20 6 2.8563 -3.2585 -5.3157 21 9 2.0027 -2.9602 -6.3194 22 6 2.5455 -2.9030 -4.0153 23 1 -0.3633 0.0899 1.0238 24 1 -0.3633 0.8416 -0.5897 25 1 -0.3633 -0.9315 -0.4339 26 1 -0.0446 3.0598 1.4386 27 1 1.6084 -2.0286 0.5131 28 1 3.1499 -1.1386 0.5134 29 1 3.3704 -3.4286 -0.9335 30 1 5.2984 -4.1064 -2.4604 31 1 4.2832 -4.1963 -6.6048 32 1 1.6207 -2.3875 -3.8024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066844310.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:18 Heat of formation + Delta-G solvation = -65.549767 kcal Electronic energy + Delta-G solvation = -19984.288172 eV Core-core repulsion = 16389.250947 eV Total energy + Delta-G solvation = -3595.037225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.13641 -49.00492 -40.22715 -38.07249 -35.31000 -34.35522 -31.44255 -30.38681 -29.91910 -27.17484 -25.87134 -23.40226 -22.96584 -21.56204 -20.10127 -18.54681 -17.40702 -16.81932 -16.61768 -16.39310 -16.03067 -15.85648 -15.52513 -15.36080 -14.82172 -14.55788 -14.28801 -13.67572 -13.41601 -13.11579 -12.79808 -12.20825 -12.03964 -11.99548 -11.80989 -11.32073 -10.91576 -10.76497 -10.45489 -10.22821 -10.02527 -9.98130 -9.44787 -8.82269 -8.59434 -8.31381 -6.87327 -5.79752 -3.29603 0.87488 0.93411 2.97123 3.04229 3.36319 3.43148 3.45096 3.46020 3.88309 4.30768 4.44721 4.70570 4.78303 4.99256 5.06917 5.33925 5.44618 5.56184 5.72041 5.82891 5.96508 5.98223 6.10078 6.17654 6.40319 6.70595 6.85452 7.37783 7.56327 7.68403 7.77731 8.29211 8.58676 9.14424 9.73415 10.20223 11.25020 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.026344 B = 0.004228 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.598384 B = 6621.680791 C = 6697.286630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.573 5.573 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.008 3.992 6 N -0.907 5.907 7 Si 0.910 3.090 8 H -0.278 1.278 9 H -0.288 1.288 10 H -0.288 1.288 11 C 0.138 3.862 12 C 0.472 3.528 13 O -0.496 6.496 14 N -0.685 5.685 15 C 0.220 3.780 16 C -0.202 4.202 17 C 0.147 3.853 18 F -0.133 7.133 19 C -0.220 4.220 20 C 0.150 3.850 21 F -0.130 7.130 22 C -0.172 4.172 23 H 0.036 0.964 24 H 0.048 0.952 25 H -0.005 1.005 26 H 0.254 0.746 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.411 0.589 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.648 -15.059 -6.675 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.292 5.292 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.191 4.191 6 N -0.552 5.552 7 Si 0.740 3.260 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.215 1.215 11 C 0.004 3.996 12 C 0.258 3.742 13 O -0.366 6.366 14 N -0.333 5.333 15 C 0.123 3.877 16 C -0.224 4.224 17 C 0.127 3.873 18 F -0.111 7.111 19 C -0.241 4.241 20 C 0.130 3.870 21 F -0.108 7.108 22 C -0.194 4.194 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.013 0.987 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.248 0.752 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.166 -14.267 -7.190 17.125 hybrid contribution 0.677 0.573 -0.167 0.902 sum 6.843 -13.694 -7.356 16.984 Atomic orbital electron populations 1.20899 0.81741 0.95865 0.99494 1.43650 1.02190 0.99718 1.83640 1.19191 0.99077 0.86074 1.34192 0.91483 1.25065 0.97172 0.98771 0.98043 1.70064 1.15960 1.27729 1.41403 0.86097 0.78999 0.83653 0.77263 1.20262 1.21471 1.21495 1.20705 0.98964 0.90906 0.89048 1.24337 0.75461 0.78147 0.96292 1.90656 1.47106 1.52492 1.46388 1.44359 1.59253 1.24487 1.05206 1.17246 0.91031 0.93321 0.86144 1.20866 0.97848 1.07518 0.96157 1.16838 0.82606 0.95187 0.92672 1.91517 1.46125 1.78898 1.94584 1.20877 0.95302 1.07246 1.00627 1.17051 0.87970 0.97274 0.84753 1.91530 1.69049 1.91053 1.59198 1.21384 1.02880 1.04676 0.90418 0.94555 0.93356 0.98659 0.93606 0.90711 0.89655 0.75245 0.83828 0.83730 0.82340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 8.95 59.85 0.54 4.58 16 2 N -0.57 -14.14 2.41 -182.50 -0.44 -14.58 16 3 C -0.26 -7.02 9.66 -15.06 -0.15 -7.16 16 4 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 5 C 0.01 0.22 5.24 -17.43 -0.09 0.13 16 6 N -0.91 -26.07 10.45 55.49 0.58 -25.49 16 7 Si 0.91 21.98 29.56 -169.99 -5.02 16.95 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.14 2.52 6.13 -5.19 -0.03 2.49 16 12 C 0.47 8.41 7.74 -10.99 -0.09 8.32 16 13 O -0.50 -11.14 13.88 5.55 0.08 -11.06 16 14 N -0.69 -8.88 5.33 -9.88 -0.05 -8.93 16 15 C 0.22 2.96 6.29 -83.72 -0.53 2.43 16 16 C -0.20 -2.28 9.94 -39.32 -0.39 -2.67 16 17 C 0.15 1.70 7.29 -39.46 -0.29 1.41 16 18 F -0.13 -1.50 17.27 2.25 0.04 -1.47 16 19 C -0.22 -2.59 10.00 -39.41 -0.39 -2.98 16 20 C 0.15 2.05 7.30 -39.45 -0.29 1.76 16 21 F -0.13 -1.85 17.27 2.25 0.04 -1.81 16 22 C -0.17 -2.60 8.67 -39.31 -0.34 -2.94 16 23 H 0.04 0.93 7.35 -51.93 -0.38 0.55 16 24 H 0.05 1.32 7.26 -51.93 -0.38 0.94 16 25 H -0.01 -0.11 8.03 -51.93 -0.42 -0.53 16 26 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 28 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 29 H 0.41 3.62 8.82 -40.82 -0.36 3.26 16 30 H 0.14 1.27 8.06 -52.48 -0.42 0.84 16 31 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.16 2.75 6.24 -52.49 -0.33 2.43 16 LS Contribution 290.77 15.07 4.38 4.38 Total: -1.00 -32.06 290.77 -5.54 -37.60 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -3.09 Total: -0.98 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -2.05 Total: 5.38 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.09 Total: -49.00 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.08 Total: -3.28 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.06 -5.54 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066844310.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.950 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds