Wall clock time and date at job start Mon Mar 30 2020 01:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 120.00201 * 2 1 4 4 H 1.48500 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47177 * 299.99792 * 3 2 1 6 6 H 1.48504 * 109.47172 * 59.99909 * 3 2 1 7 7 C 1.38974 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 184.48227 * 7 2 1 9 9 N 1.36980 * 120.00157 * 4.48976 * 7 2 1 10 10 C 1.46501 * 119.99930 * 121.69922 * 9 7 2 11 11 C 1.50706 * 109.47125 * 276.87706 * 10 9 7 12 12 C 1.38238 * 119.99886 * 309.47189 * 11 10 9 13 13 C 1.38238 * 119.99908 * 179.76530 * 12 11 10 14 14 C 1.38226 * 119.99756 * 0.50711 * 13 12 11 15 15 C 1.38240 * 120.00300 * 359.74335 * 14 13 12 16 16 C 1.38231 * 119.99853 * 129.74036 * 11 10 9 17 17 C 1.34773 * 119.99556 * 301.69948 * 9 7 2 18 18 O 1.21651 * 120.00354 * 2.82893 * 17 9 7 19 19 C 1.47184 * 119.99673 * 182.82818 * 17 9 7 20 20 C 1.46717 * 127.02102 * 155.18969 * 19 17 9 21 21 C 1.34448 * 106.39277 * 180.02562 * 20 19 17 22 22 N 1.36428 * 109.08598 * 359.97438 * 21 20 19 23 23 H 0.97000 * 124.81783 * 179.97438 * 22 21 20 24 24 C 1.34709 * 110.36077 * 0.27379 * 22 21 20 25 25 H 0.97001 * 119.99786 * 4.99715 * 1 2 3 26 26 H 1.08998 * 109.47098 * 36.87535 * 10 9 7 27 27 H 1.08997 * 109.46962 * 156.88347 * 10 9 7 28 28 H 1.08001 * 119.99959 * 359.97438 * 12 11 10 29 29 H 1.08003 * 119.99804 * 180.22691 * 13 12 11 30 30 H 1.07998 * 120.00040 * 179.72360 * 14 13 12 31 31 H 1.07997 * 120.00122 * 179.97438 * 15 14 13 32 32 H 1.07996 * 120.00429 * 0.02562 * 16 11 10 33 33 H 1.07998 * 126.79834 * 359.97438 * 20 19 17 34 34 H 1.08002 * 125.45987 * 179.97438 * 21 20 19 35 35 H 1.07997 * 125.89629 * 179.73370 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0090 -1.2036 0.0005 8 1 3.0865 -1.2050 0.0736 9 7 1.3272 -2.3881 -0.0918 10 6 1.6123 -3.3135 -1.1911 11 6 0.8394 -2.8934 -2.4147 12 6 -0.5180 -2.6478 -2.3243 13 6 -1.2260 -2.2577 -3.4457 14 6 -0.5787 -2.1234 -4.6596 15 6 0.7777 -2.3739 -4.7511 16 6 1.4868 -2.7589 -3.6287 17 6 0.3942 -2.7020 0.8287 18 8 0.1209 -1.9114 1.7119 19 6 -0.2940 -4.0015 0.7653 20 6 -0.9221 -4.7237 1.8773 21 6 -1.4230 -5.8582 1.3582 22 7 -1.1558 -5.8929 0.0208 23 1 -1.4149 -6.6112 -0.5773 24 6 -0.4752 -4.7911 -0.3499 25 1 -0.4850 0.8369 -0.0732 26 1 2.6795 -3.2973 -1.4122 27 1 1.3161 -4.3221 -0.9030 28 1 -1.0246 -2.7575 -1.3768 29 1 -2.2858 -2.0624 -3.3742 30 1 -1.1327 -1.8229 -5.5366 31 1 1.2833 -2.2693 -5.6997 32 1 2.5463 -2.9553 -3.7004 33 1 -0.9714 -4.4070 2.9087 34 1 -1.9522 -6.6201 1.9113 35 1 -0.1330 -4.5644 -1.3488 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068291736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:29 Heat of formation + Delta-G solvation = 72.427399 kcal Electronic energy + Delta-G solvation = -20808.590231 eV Core-core repulsion = 17773.765675 eV Total energy + Delta-G solvation = -3034.824556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59876 -38.79374 -37.35465 -34.22046 -32.20514 -30.47439 -30.22997 -30.06869 -28.57622 -25.57975 -24.49835 -22.07433 -21.51843 -20.53312 -20.14217 -19.02092 -17.44314 -16.49067 -16.09544 -15.10348 -14.81300 -14.53863 -14.33933 -13.84698 -13.58719 -13.24248 -13.05946 -12.72292 -12.46574 -12.22942 -12.04459 -11.85178 -11.53675 -11.12469 -10.93802 -10.83743 -10.63609 -10.36920 -10.23589 -10.10293 -8.53994 -8.28798 -8.20775 -8.18007 -7.94371 -7.59649 -6.90082 -5.94818 -3.86116 1.95178 2.02293 2.60082 3.12697 3.35654 3.42592 3.45132 3.72335 4.32746 4.44282 4.95370 5.17103 5.30098 5.42719 5.51445 5.53087 5.56532 5.59695 5.78650 5.92444 6.02403 6.14630 6.22083 6.27650 6.42336 6.58636 6.65133 6.66935 6.71001 7.01794 7.12950 7.31862 7.35058 7.50143 7.62922 7.77029 7.92953 8.50508 9.27780 9.33109 9.75530 10.50283 11.11755 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.010129 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.668019 B = 2763.763888 C = 4198.136051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.340 4.340 8 H 0.073 0.927 9 N -0.452 5.452 10 C 0.121 3.879 11 C -0.080 4.080 12 C -0.084 4.084 13 C -0.125 4.125 14 C -0.134 4.134 15 C -0.132 4.132 16 C -0.114 4.114 17 C 0.554 3.446 18 O -0.524 6.524 19 C -0.193 4.193 20 C -0.153 4.153 21 C -0.037 4.037 22 N -0.561 5.561 23 H 0.408 0.592 24 C -0.007 4.007 25 H 0.259 0.741 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.139 0.861 34 H 0.159 0.841 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.768 -11.458 -7.233 13.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.468 4.468 8 H 0.090 0.910 9 N -0.175 5.175 10 C -0.003 4.003 11 C -0.082 4.082 12 C -0.102 4.102 13 C -0.143 4.143 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.133 4.133 17 C 0.342 3.658 18 O -0.401 6.401 19 C -0.203 4.203 20 C -0.179 4.179 21 C -0.165 4.165 22 N -0.156 5.156 23 H 0.243 0.757 24 C -0.139 4.139 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.146 0.854 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.157 0.843 34 H 0.177 0.823 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.115 -10.988 -6.720 13.052 hybrid contribution 0.134 0.785 -0.513 0.947 sum -1.982 -10.203 -7.232 12.662 Atomic orbital electron populations 1.69933 1.05963 1.26649 1.43354 1.25506 0.95052 0.99075 0.94411 0.86286 0.79977 0.83302 0.77439 1.19531 1.21076 1.20929 1.18876 0.90673 0.82004 1.55215 0.90963 1.42951 1.37127 1.17520 1.19880 1.21016 0.98256 0.94757 0.86320 1.20512 0.94174 0.98403 0.95089 1.21230 0.94112 0.96549 0.98338 1.21053 0.99631 1.00463 0.93125 1.20962 0.94874 1.01967 0.97388 1.20952 0.94408 1.01514 0.98106 1.20964 0.99291 1.00570 0.92461 1.17370 0.81692 0.83948 0.82768 1.90620 1.63420 1.49892 1.36129 1.21560 1.07477 0.98201 0.93076 1.21918 1.02646 0.94545 0.98773 1.21587 1.09112 1.01774 0.83979 1.41586 1.45951 1.19209 1.08848 0.75712 1.23257 1.01538 0.88618 1.00513 0.93076 0.91454 0.89779 0.85382 0.87050 0.87230 0.87053 0.86602 0.84287 0.82333 0.79856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.84 11.52 55.50 0.64 -24.20 16 2 C 0.07 2.00 5.05 -17.46 -0.09 1.91 16 3 Si 0.90 22.14 29.56 -169.99 -5.02 17.11 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.34 -9.54 8.92 -14.98 -0.13 -9.68 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.57 16 9 N -0.45 -11.53 2.20 -117.39 -0.26 -11.79 16 10 C 0.12 2.43 5.27 -5.19 -0.03 2.40 16 11 C -0.08 -1.55 4.84 -104.62 -0.51 -2.06 16 12 C -0.08 -1.68 7.76 -39.58 -0.31 -1.99 16 13 C -0.12 -2.22 10.05 -39.59 -0.40 -2.62 16 14 C -0.13 -2.13 10.05 -39.59 -0.40 -2.53 16 15 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 16 C -0.11 -1.94 9.67 -39.58 -0.38 -2.33 16 17 C 0.55 14.79 6.07 -12.63 -0.08 14.72 16 18 O -0.52 -16.42 15.17 5.23 0.08 -16.34 16 19 C -0.19 -4.15 5.55 -102.99 -0.57 -4.73 16 20 C -0.15 -2.89 11.05 -37.50 -0.41 -3.30 16 21 C -0.04 -0.52 11.87 -16.85 -0.20 -0.72 16 22 N -0.56 -7.51 5.90 -12.59 -0.07 -7.58 16 23 H 0.41 3.75 8.96 -40.82 -0.37 3.38 16 24 C -0.01 -0.11 8.00 -16.43 -0.13 -0.24 16 25 H 0.26 7.50 8.32 -40.82 -0.34 7.16 16 26 H 0.07 1.27 7.86 -51.93 -0.41 0.86 16 27 H 0.08 1.51 4.26 -51.93 -0.22 1.29 16 28 H 0.13 2.88 5.17 -52.49 -0.27 2.61 16 29 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.12 1.72 7.97 -52.49 -0.42 1.30 16 33 H 0.14 2.59 8.06 -52.49 -0.42 2.16 16 34 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.18 3.00 3.40 -52.49 -0.18 2.83 16 LS Contribution 293.93 15.07 4.43 4.43 Total: -1.00 -35.58 293.93 -7.77 -43.35 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.52 Total: 8.64 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -4.03 Total: -13.63 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.31 Total: -43.57 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.08 Total: -16.34 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -35.58 -7.77 -43.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068291736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.778 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds