Wall clock time and date at job start Mon Mar 30 2020 01:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 120.00201 * 2 1 4 4 H 1.48500 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47177 * 299.99792 * 3 2 1 6 6 H 1.48504 * 109.47172 * 59.99909 * 3 2 1 7 7 C 1.38974 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 184.48227 * 7 2 1 9 9 N 1.36980 * 120.00157 * 4.48976 * 7 2 1 10 10 C 1.46501 * 119.99930 * 121.69922 * 9 7 2 11 11 C 1.50706 * 109.47125 * 276.87706 * 10 9 7 12 12 C 1.38238 * 119.99886 * 309.47189 * 11 10 9 13 13 C 1.38238 * 119.99908 * 179.76530 * 12 11 10 14 14 C 1.38226 * 119.99756 * 0.50711 * 13 12 11 15 15 C 1.38240 * 120.00300 * 359.74335 * 14 13 12 16 16 C 1.38231 * 119.99853 * 129.74036 * 11 10 9 17 17 C 1.34773 * 119.99556 * 301.69948 * 9 7 2 18 18 O 1.21651 * 120.00354 * 2.82893 * 17 9 7 19 19 C 1.47184 * 119.99673 * 182.82818 * 17 9 7 20 20 C 1.46717 * 127.02102 * 155.18969 * 19 17 9 21 21 C 1.34448 * 106.39277 * 180.02562 * 20 19 17 22 22 N 1.36428 * 109.08598 * 359.97438 * 21 20 19 23 23 H 0.97000 * 124.81783 * 179.97438 * 22 21 20 24 24 C 1.34709 * 110.36077 * 0.27379 * 22 21 20 25 25 H 0.97001 * 119.99786 * 4.99715 * 1 2 3 26 26 H 1.08998 * 109.47098 * 36.87535 * 10 9 7 27 27 H 1.08997 * 109.46962 * 156.88347 * 10 9 7 28 28 H 1.08001 * 119.99959 * 359.97438 * 12 11 10 29 29 H 1.08003 * 119.99804 * 180.22691 * 13 12 11 30 30 H 1.07998 * 120.00040 * 179.72360 * 14 13 12 31 31 H 1.07997 * 120.00122 * 179.97438 * 15 14 13 32 32 H 1.07996 * 120.00429 * 0.02562 * 16 11 10 33 33 H 1.07998 * 126.79834 * 359.97438 * 20 19 17 34 34 H 1.08002 * 125.45987 * 179.97438 * 21 20 19 35 35 H 1.07997 * 125.89629 * 179.73370 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0090 -1.2036 0.0005 8 1 3.0865 -1.2050 0.0736 9 7 1.3272 -2.3881 -0.0918 10 6 1.6123 -3.3135 -1.1911 11 6 0.8394 -2.8934 -2.4147 12 6 -0.5180 -2.6478 -2.3243 13 6 -1.2260 -2.2577 -3.4457 14 6 -0.5787 -2.1234 -4.6596 15 6 0.7777 -2.3739 -4.7511 16 6 1.4868 -2.7589 -3.6287 17 6 0.3942 -2.7020 0.8287 18 8 0.1209 -1.9114 1.7119 19 6 -0.2940 -4.0015 0.7653 20 6 -0.9221 -4.7237 1.8773 21 6 -1.4230 -5.8582 1.3582 22 7 -1.1558 -5.8929 0.0208 23 1 -1.4149 -6.6112 -0.5773 24 6 -0.4752 -4.7911 -0.3499 25 1 -0.4850 0.8369 -0.0732 26 1 2.6795 -3.2973 -1.4122 27 1 1.3161 -4.3221 -0.9030 28 1 -1.0246 -2.7575 -1.3768 29 1 -2.2858 -2.0624 -3.3742 30 1 -1.1327 -1.8229 -5.5366 31 1 1.2833 -2.2693 -5.6997 32 1 2.5463 -2.9553 -3.7004 33 1 -0.9714 -4.4070 2.9087 34 1 -1.9522 -6.6201 1.9113 35 1 -0.1330 -4.5644 -1.3488 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068291736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:28 Heat of formation + Delta-G solvation = 48.972338 kcal Electronic energy + Delta-G solvation = -20809.607319 eV Core-core repulsion = 17773.765675 eV Total energy + Delta-G solvation = -3035.841644 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.00299 -40.23905 -39.14148 -36.12878 -34.17330 -31.95119 -31.71016 -31.55451 -30.00247 -27.29543 -26.37467 -23.45931 -23.17760 -21.98348 -21.48633 -20.57529 -19.08354 -18.16323 -17.66358 -16.85578 -16.59663 -16.01257 -15.83281 -15.51795 -15.30924 -14.63276 -14.57079 -14.14555 -13.93122 -13.78812 -13.66865 -13.39825 -13.12614 -12.99219 -12.86435 -12.53215 -12.44546 -12.01399 -11.84915 -11.66092 -10.68776 -10.08516 -9.63340 -9.57345 -9.50966 -9.04244 -8.89992 -8.07863 -6.04425 0.59665 0.67184 1.14585 1.38168 1.41449 1.51684 1.72580 2.37049 2.55657 2.97537 3.06820 3.29541 3.46555 4.11748 4.13195 4.25357 4.27850 4.39754 4.44341 4.48455 4.56688 4.71352 4.82843 4.86971 4.96607 5.16511 5.25312 5.27905 5.33091 5.55218 5.70989 5.76779 5.88739 5.93343 6.10444 6.28916 6.35940 6.85263 7.18322 7.34422 7.73414 8.50877 8.98085 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.010129 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.668019 B = 2763.763888 C = 4198.136051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.018 3.982 3 Si 0.966 3.034 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.294 1.294 7 C -0.356 4.356 8 H 0.072 0.928 9 N -0.462 5.462 10 C 0.122 3.878 11 C -0.098 4.098 12 C -0.103 4.103 13 C -0.139 4.139 14 C -0.128 4.128 15 C -0.126 4.126 16 C -0.118 4.118 17 C 0.543 3.457 18 O -0.595 6.595 19 C -0.246 4.246 20 C -0.200 4.200 21 C 0.008 3.992 22 N -0.535 5.535 23 H 0.435 0.565 24 C 0.019 3.981 25 H 0.253 0.747 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.125 0.875 34 H 0.213 0.787 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 -13.439 -10.097 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.221 1.221 7 C -0.484 4.484 8 H 0.089 0.911 9 N -0.183 5.183 10 C -0.001 4.001 11 C -0.099 4.099 12 C -0.122 4.122 13 C -0.157 4.157 14 C -0.146 4.146 15 C -0.144 4.144 16 C -0.136 4.136 17 C 0.334 3.666 18 O -0.477 6.477 19 C -0.257 4.257 20 C -0.225 4.225 21 C -0.121 4.121 22 N -0.132 5.132 23 H 0.275 0.725 24 C -0.117 4.117 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.113 0.887 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.229 0.771 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.861 -13.037 -9.647 16.324 hybrid contribution 0.044 1.268 0.334 1.312 sum -1.817 -11.768 -9.313 15.117 Atomic orbital electron populations 1.70116 1.07481 1.26714 1.45135 1.26319 0.95781 1.02475 0.94265 0.85316 0.79514 0.79043 0.77061 1.17816 1.20046 1.22058 1.19171 0.90889 0.83448 1.54905 0.91070 1.43148 1.36421 1.17561 1.21209 1.21137 0.99150 0.94502 0.85326 1.20400 0.93884 1.00056 0.95562 1.21037 0.94719 0.98688 0.97747 1.21255 1.00266 1.00701 0.93494 1.21354 0.95389 1.00345 0.97490 1.21394 0.94321 0.99586 0.99087 1.21269 1.00508 0.99885 0.91943 1.18119 0.81580 0.85156 0.81775 1.90540 1.65925 1.52442 1.38796 1.21269 1.10664 0.97570 0.96163 1.22014 1.05450 0.96797 0.98237 1.22149 1.05735 1.00439 0.83821 1.41567 1.43863 1.18585 1.09187 0.72464 1.23074 1.00518 0.88609 0.99449 0.93830 0.90366 0.87914 0.88743 0.86307 0.83934 0.83319 0.84378 0.85701 0.77074 0.79027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -54.41 11.52 21.67 0.25 -54.16 16 2 C 0.02 1.06 5.05 84.93 0.43 1.49 16 3 Si 0.97 46.78 29.56 68.60 2.03 48.81 16 4 H -0.25 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 7 C -0.36 -20.71 8.92 84.07 0.75 -19.96 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.46 -24.55 2.20 -643.56 -1.42 -25.96 16 10 C 0.12 4.93 5.27 85.63 0.45 5.38 16 11 C -0.10 -3.71 4.84 -19.86 -0.10 -3.81 16 12 C -0.10 -4.18 7.76 22.27 0.17 -4.01 16 13 C -0.14 -4.83 10.05 22.27 0.22 -4.61 16 14 C -0.13 -3.67 10.05 22.27 0.22 -3.44 16 15 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 16 C -0.12 -3.70 9.67 22.27 0.22 -3.49 16 17 C 0.54 30.78 6.07 86.59 0.53 31.31 16 18 O -0.59 -40.20 15.17 -4.19 -0.06 -40.26 16 19 C -0.25 -11.01 5.55 -18.81 -0.10 -11.12 16 20 C -0.20 -7.68 11.05 23.62 0.26 -7.41 16 21 C 0.01 0.20 11.87 83.11 0.99 1.19 16 22 N -0.54 -12.67 5.90 -193.75 -1.14 -13.81 16 23 H 0.44 6.00 8.96 -92.71 -0.83 5.17 16 24 C 0.02 0.63 8.00 84.16 0.67 1.30 16 25 H 0.25 15.42 8.32 -92.71 -0.77 14.65 16 26 H 0.08 2.91 7.86 -2.39 -0.02 2.89 16 27 H 0.10 3.66 4.26 -2.39 -0.01 3.65 16 28 H 0.09 4.45 5.17 -2.91 -0.02 4.43 16 29 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 30 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 31 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.14 3.65 7.97 -2.91 -0.02 3.62 16 33 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 34 H 0.21 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.19 6.14 3.40 -2.91 -0.01 6.13 16 Total: -1.00 -84.91 293.93 4.89 -80.02 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.30 Total: 25.80 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 4.94 Total: -20.43 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -2.31 Total: -93.93 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.06 Total: -40.26 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -84.91 4.89 -80.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068291736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.988 kcal (2) G-P(sol) polarization free energy of solvation -84.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds