Wall clock time and date at job start Mon Mar 30 2020 01:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36932 * 120.00134 * 2 1 4 4 H 1.08002 * 120.00137 * 213.41730 * 3 2 1 5 5 C 1.38814 * 120.00008 * 33.41180 * 3 2 1 6 6 N 1.31618 * 119.99841 * 355.48628 * 5 3 2 7 7 Si 1.86805 * 120.00120 * 175.48454 * 5 3 2 8 8 H 1.48499 * 109.46771 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46847 * 120.00137 * 7 5 3 10 10 H 1.48496 * 109.46980 * 240.00392 * 7 5 3 11 11 C 1.46502 * 119.99934 * 179.97438 * 2 1 3 12 12 C 1.50703 * 109.47040 * 90.00219 * 11 2 1 13 13 O 1.21300 * 119.99767 * 0.02562 * 12 11 2 14 14 N 1.34769 * 120.00077 * 180.27184 * 12 11 2 15 15 C 1.40152 * 119.99986 * 175.90552 * 14 12 11 16 16 C 1.38788 * 120.05395 * 34.21723 * 15 14 12 17 17 C 1.38144 * 119.97782 * 179.72625 * 16 15 14 18 18 C 1.38480 * 120.08584 * 0.57054 * 17 16 15 19 19 F 1.35104 * 119.94266 * 179.72804 * 18 17 16 20 20 C 1.38444 * 120.10573 * 359.70227 * 18 17 16 21 21 C 1.38301 * 120.02406 * 359.97438 * 20 18 17 22 22 F 1.35098 * 120.04555 * 179.97438 * 21 20 18 23 23 H 1.08996 * 109.47524 * 274.84049 * 1 2 3 24 24 H 1.09001 * 109.47500 * 34.84574 * 1 2 3 25 25 H 1.09007 * 109.47139 * 154.84088 * 1 2 3 26 26 H 0.97000 * 119.99652 * 180.02562 * 6 5 3 27 27 H 1.08999 * 109.47510 * 330.00226 * 11 2 1 28 28 H 1.08998 * 109.47044 * 210.00095 * 11 2 1 29 29 H 0.96999 * 120.00445 * 355.91325 * 14 12 11 30 30 H 1.08007 * 120.00561 * 359.97438 * 16 15 14 31 31 H 1.08008 * 119.95650 * 180.27131 * 17 16 15 32 32 H 1.08007 * 119.98814 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0958 1.2632 -0.5151 5 6 1.6277 2.2887 0.6620 6 7 0.4347 2.2211 1.2138 7 14 2.6185 3.8687 0.7697 8 1 3.9174 3.6868 0.0733 9 1 1.8620 4.9721 0.1252 10 1 2.8633 4.2031 2.1956 11 6 2.1975 -1.2688 0.0006 12 6 2.4487 -1.7044 -1.4201 13 8 2.0550 -1.0219 -2.3423 14 7 3.1064 -2.8547 -1.6659 15 6 3.2650 -3.3033 -2.9841 16 6 3.4295 -2.3884 -4.0147 17 6 3.5914 -2.8325 -5.3127 18 6 3.5780 -4.1894 -5.5890 19 9 3.7311 -4.6203 -6.8603 20 6 3.4084 -5.1050 -4.5645 21 6 3.2526 -4.6656 -3.2624 22 9 3.0866 -5.5586 -2.2624 23 1 -0.3634 0.0867 1.0239 24 1 -0.3634 0.8434 -0.5872 25 1 -0.3634 -0.9302 -0.4369 26 1 0.0698 2.9919 1.6760 27 1 1.6084 -2.0282 0.5147 28 1 3.1499 -1.1382 0.5143 29 1 3.4699 -3.3723 -0.9304 30 1 3.4350 -1.3296 -3.8012 31 1 3.7239 -2.1203 -6.1138 32 1 3.3986 -6.1629 -4.7820 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972874.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:19 Heat of formation + Delta-G solvation = -86.502498 kcal Electronic energy + Delta-G solvation = -20058.980905 eV Core-core repulsion = 16463.035101 eV Total energy + Delta-G solvation = -3595.945804 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.06397 -49.98101 -41.37921 -39.31532 -37.08213 -35.65558 -33.38101 -31.92501 -30.73132 -28.55614 -27.84839 -24.76863 -24.10775 -23.08499 -21.43735 -19.52043 -19.04130 -18.56656 -18.27657 -17.59490 -17.00521 -16.88926 -16.65871 -16.35053 -16.13600 -15.63642 -15.48995 -15.08819 -14.98672 -14.84814 -14.06477 -13.74070 -13.54571 -13.28475 -13.14871 -12.80298 -12.64133 -12.59304 -12.30649 -12.12264 -11.87273 -11.38254 -10.93871 -10.59043 -10.09586 -9.16323 -8.72424 -7.88965 -5.46258 -0.18503 -0.04965 1.46134 1.47570 1.58058 1.65531 1.96096 2.37152 2.49632 2.79418 3.26249 3.27996 3.56064 3.67372 3.81832 3.96742 4.12774 4.47175 4.57349 4.67319 4.69531 4.82040 4.86383 4.99877 5.05597 5.31291 5.32590 5.64618 5.67865 5.77591 6.28997 6.43822 7.11340 7.24000 7.76721 8.24429 9.14968 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031137 B = 0.004241 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.043722 B = 6599.922204 C = 7081.466543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.595 5.595 3 C -0.269 4.269 4 H 0.060 0.940 5 C -0.037 4.037 6 N -0.931 5.931 7 Si 0.970 3.030 8 H -0.268 1.268 9 H -0.294 1.294 10 H -0.282 1.282 11 C 0.134 3.866 12 C 0.484 3.516 13 O -0.547 6.547 14 N -0.666 5.666 15 C 0.104 3.896 16 C -0.086 4.086 17 C -0.136 4.136 18 C 0.103 3.897 19 F -0.133 7.133 20 C -0.161 4.161 21 C 0.095 3.905 22 F -0.127 7.127 23 H 0.020 0.980 24 H 0.007 0.993 25 H 0.018 0.982 26 H 0.251 0.749 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.427 0.573 30 H 0.138 0.862 31 H 0.160 0.840 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.942 -15.865 -8.375 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.316 5.316 3 C -0.399 4.399 4 H 0.077 0.923 5 C -0.234 4.234 6 N -0.576 5.576 7 Si 0.797 3.203 8 H -0.192 1.192 9 H -0.221 1.221 10 H -0.208 1.208 11 C 0.003 3.997 12 C 0.271 3.729 13 O -0.422 6.422 14 N -0.315 5.315 15 C 0.008 3.992 16 C -0.107 4.107 17 C -0.155 4.155 18 C 0.083 3.917 19 F -0.112 7.112 20 C -0.181 4.181 21 C 0.073 3.927 22 F -0.106 7.106 23 H 0.039 0.961 24 H 0.026 0.974 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.266 0.734 30 H 0.155 0.845 31 H 0.178 0.822 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 7.493 -15.225 -8.838 19.133 hybrid contribution 0.251 0.654 0.258 0.746 sum 7.744 -14.571 -8.580 18.599 Atomic orbital electron populations 1.20610 0.82884 0.95291 0.97748 1.43729 1.01940 1.01092 1.84810 1.19327 1.04195 0.89693 1.26655 0.92255 1.26025 0.97725 1.02253 0.97352 1.70190 1.16977 1.30579 1.39849 0.85181 0.78537 0.79131 0.77423 1.19247 1.22053 1.20838 1.20971 0.99795 0.89308 0.89649 1.23609 0.75129 0.78951 0.95221 1.90626 1.50555 1.53707 1.47312 1.43763 1.56358 1.25255 1.06127 1.18096 1.02730 0.91262 0.87149 1.21058 0.97668 1.00568 0.91380 1.21289 1.01946 0.94586 0.97710 1.17246 1.03340 0.92086 0.79048 1.91522 1.93129 1.90385 1.36159 1.21026 1.04991 1.02508 0.89571 1.17012 1.05823 0.84474 0.85414 1.91513 1.93088 1.66716 1.59266 0.96145 0.97374 0.96386 0.93916 0.87814 0.87851 0.73439 0.84459 0.82231 0.80706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.12 8.97 127.77 1.15 10.26 16 2 N -0.60 -29.75 2.40 -731.30 -1.76 -31.51 16 3 C -0.27 -14.81 9.57 84.03 0.80 -14.00 16 4 H 0.06 3.27 7.83 -2.91 -0.02 3.24 16 5 C -0.04 -2.08 5.38 84.86 0.46 -1.63 16 6 N -0.93 -54.50 10.60 21.65 0.23 -54.27 16 7 Si 0.97 44.73 29.56 68.60 2.03 46.76 16 8 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 9 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 11 C 0.13 4.92 6.13 85.63 0.52 5.44 16 12 C 0.48 17.35 7.74 87.66 0.68 18.03 16 13 O -0.55 -24.57 13.84 -3.09 -0.04 -24.61 16 14 N -0.67 -17.81 5.23 -303.26 -1.59 -19.40 16 15 C 0.10 2.77 6.32 38.13 0.24 3.02 16 16 C -0.09 -2.41 8.70 22.38 0.19 -2.21 16 17 C -0.14 -3.07 10.02 22.30 0.22 -2.85 16 18 C 0.10 2.14 7.30 22.38 0.16 2.31 16 19 F -0.13 -2.74 17.26 44.97 0.78 -1.96 16 20 C -0.16 -3.08 10.00 22.33 0.22 -2.86 16 21 C 0.09 2.12 7.31 22.48 0.16 2.28 16 22 F -0.13 -2.72 16.95 44.97 0.76 -1.95 16 23 H 0.02 1.08 7.27 -2.39 -0.02 1.07 16 24 H 0.01 0.43 7.56 -2.39 -0.02 0.41 16 25 H 0.02 0.80 8.04 -2.38 -0.02 0.78 16 26 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.10 3.17 8.07 -2.39 -0.02 3.15 16 28 H 0.10 3.41 8.04 -2.39 -0.02 3.39 16 29 H 0.43 8.36 8.66 -92.71 -0.80 7.56 16 30 H 0.14 4.58 6.18 -2.91 -0.02 4.56 16 31 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -67.94 290.67 5.60 -62.35 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 0.37 Total: 6.82 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 4.82 Total: 17.78 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -3.11 Total: -105.18 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.04 Total: -24.61 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 1.54 Total: -3.92 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -67.94 5.60 -62.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972874.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.157 kcal (2) G-P(sol) polarization free energy of solvation -67.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds