Wall clock time and date at job start Mon Mar 30 2020 01:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35971 * 116.99837 * 2 1 4 4 C 1.38720 * 119.99623 * 179.97438 * 3 2 1 5 5 C 1.38100 * 120.00660 * 180.02562 * 4 3 2 6 6 C 1.38768 * 119.99472 * 359.97438 * 5 4 3 7 7 O 1.35919 * 120.00476 * 179.97438 * 6 5 4 8 8 C 1.35620 * 117.99955 * 184.62251 * 7 6 5 9 9 C 1.39374 * 119.81789 * 268.12157 * 8 7 6 10 10 C 1.36403 * 120.18082 * 180.27228 * 9 8 7 11 11 C 1.40850 * 119.81557 * 0.02562 * 10 9 8 12 12 C 1.41184 * 120.17286 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00254 * 28.08698 * 12 11 10 14 14 C 1.39880 * 119.99746 * 208.08090 * 12 11 10 15 15 N 1.30886 * 120.00055 * 13.03769 * 14 12 11 16 16 Si 1.86799 * 119.99823 * 193.03623 * 14 12 11 17 17 H 1.48501 * 109.47395 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47357 * 120.00011 * 16 14 12 19 19 H 1.48497 * 109.47511 * 240.00127 * 16 14 12 20 20 C 1.40856 * 119.65298 * 359.97438 * 11 10 9 21 21 C 1.36406 * 119.81133 * 359.97438 * 20 11 10 22 22 C 1.38770 * 119.98827 * 0.25744 * 6 5 4 23 23 C 1.38093 * 119.99363 * 359.48916 * 22 6 5 24 24 H 1.09002 * 109.47254 * 60.00487 * 1 2 3 25 25 H 1.08998 * 109.46957 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47283 * 299.99936 * 1 2 3 27 27 H 1.08002 * 119.99726 * 359.97438 * 4 3 2 28 28 H 1.07995 * 120.00567 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.90902 * 0.27577 * 9 8 7 30 30 H 1.08005 * 120.09066 * 180.02562 * 10 9 8 31 31 H 0.97002 * 119.99405 * 179.97438 * 15 14 12 32 32 H 1.07998 * 120.09508 * 179.97438 * 20 11 10 33 33 H 1.07999 * 119.90830 * 180.02562 * 21 20 11 34 34 H 1.07994 * 120.00011 * 179.72564 * 22 6 5 35 35 H 1.08001 * 119.99913 * 180.23597 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4315 1.2841 0.0005 5 6 4.0587 2.5145 0.0011 6 6 3.3030 3.6783 0.0005 7 8 3.9200 4.8894 0.0016 8 6 3.1454 5.9985 0.0975 9 6 2.6966 6.6326 -1.0596 10 6 1.9218 7.7518 -0.9718 11 6 1.5760 8.2666 0.2928 12 6 0.7749 9.4249 0.3925 13 1 0.0686 9.6619 -0.3894 14 6 0.8959 10.2654 1.5040 15 7 1.9112 10.1306 2.3190 16 14 -0.3914 11.5803 1.8252 17 1 -1.4298 11.5259 0.7651 18 1 -1.0226 11.3424 3.1483 19 1 0.2543 12.9175 1.8182 20 6 2.0336 7.6199 1.4574 21 6 2.8068 6.5010 1.3525 22 6 1.9172 3.6055 0.0049 23 6 1.2905 2.3749 -0.0010 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 4.0197 0.3782 0.0014 28 1 5.1371 2.5709 0.0019 29 1 2.9630 6.2367 -2.0285 30 1 1.5745 8.2417 -1.8695 31 1 1.9952 10.7137 3.0896 32 1 1.7731 8.0088 2.4307 33 1 3.1581 6.0037 2.2444 34 1 1.3289 4.5111 0.0089 35 1 0.2120 2.3182 -0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072412541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:07 Heat of formation + Delta-G solvation = -38.937002 kcal Electronic energy + Delta-G solvation = -19293.221788 eV Core-core repulsion = 16221.275358 eV Total energy + Delta-G solvation = -3071.946430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58706 -40.41872 -38.82775 -37.28814 -35.35031 -32.15138 -31.68169 -31.31275 -30.14765 -27.97137 -26.95522 -24.06707 -23.19424 -23.07163 -22.12456 -19.46532 -19.34639 -18.86123 -17.69477 -17.26855 -16.63509 -16.30867 -16.06665 -15.77806 -15.55377 -14.85172 -14.55005 -14.40832 -14.32687 -14.07022 -13.70866 -13.46736 -13.36050 -13.04338 -12.81150 -12.75031 -12.45618 -12.35198 -11.81939 -11.68432 -11.60396 -11.15729 -11.05100 -10.05779 -9.64412 -9.28234 -8.72747 -8.65368 -6.43994 0.28968 0.49745 0.63092 1.01049 1.39352 1.44512 1.54703 2.18286 2.38998 2.50200 2.76404 2.86528 3.59761 3.86441 3.88692 4.24345 4.28626 4.33724 4.36223 4.40990 4.50552 4.54877 4.74415 4.84484 4.94450 5.03882 5.07087 5.14883 5.26400 5.33635 5.45291 5.51187 5.55630 5.74235 5.94896 5.96894 6.16063 6.43136 6.51020 6.75089 6.81863 7.08860 8.26007 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.029475 B = 0.003967 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.743291 B = 7056.270785 C = 7523.652537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.079 3.921 4 C -0.114 4.114 5 C -0.119 4.119 6 C 0.068 3.932 7 O -0.264 6.264 8 C -0.062 4.062 9 C -0.088 4.088 10 C -0.225 4.225 11 C 0.088 3.912 12 C -0.485 4.485 13 H 0.085 0.915 14 C 0.033 3.967 15 N -0.822 5.822 16 Si 0.988 3.012 17 H -0.255 1.255 18 H -0.264 1.264 19 H -0.266 1.266 20 C -0.171 4.171 21 C -0.103 4.103 22 C -0.166 4.166 23 C -0.172 4.172 24 H 0.059 0.941 25 H 0.124 0.876 26 H 0.057 0.943 27 H 0.161 0.839 28 H 0.152 0.848 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.291 0.709 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 -13.031 -1.981 13.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.034 3.966 4 C -0.132 4.132 5 C -0.138 4.138 6 C 0.025 3.975 7 O -0.176 6.176 8 C -0.104 4.104 9 C -0.106 4.106 10 C -0.244 4.244 11 C 0.085 3.915 12 C -0.514 4.514 13 H 0.103 0.897 14 C -0.182 4.182 15 N -0.447 5.447 16 Si 0.808 3.192 17 H -0.179 1.179 18 H -0.189 1.189 19 H -0.191 1.191 20 C -0.191 4.191 21 C -0.122 4.122 22 C -0.185 4.185 23 C -0.190 4.190 24 H 0.078 0.922 25 H 0.142 0.858 26 H 0.076 0.924 27 H 0.179 0.821 28 H 0.170 0.830 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.559 -13.089 -1.787 13.456 hybrid contribution -0.711 1.115 0.310 1.359 sum -3.270 -11.973 -1.477 12.499 Atomic orbital electron populations 1.23302 0.76939 1.05532 1.01841 1.86023 1.22980 1.25998 1.89350 1.19015 0.92699 0.84331 1.00518 1.20446 0.91425 0.98027 1.03313 1.20459 1.00884 0.88548 1.03885 1.19839 0.91810 0.86416 0.99467 1.84365 1.34516 1.10922 1.87843 1.18169 1.08403 0.90862 0.92989 1.20683 0.96788 0.96432 0.96732 1.20838 1.05817 1.00694 0.97047 1.18064 0.90055 0.91930 0.91448 1.19935 1.19635 1.06016 1.05771 0.89736 1.26849 0.96991 1.00505 0.93894 1.69880 1.26652 1.35853 1.12361 0.85061 0.78031 0.76746 0.79331 1.17853 1.18883 1.19065 1.20931 1.03120 0.96005 0.99021 1.20776 0.98182 0.97481 0.95748 1.21171 0.93909 0.98606 1.04817 1.21204 1.00898 0.91107 1.05808 0.92247 0.85805 0.92401 0.82118 0.83028 0.86605 0.86964 0.89801 0.87219 0.87850 0.86749 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.33 -7.86 10.50 -93.22 -0.98 -8.83 16 3 C 0.08 2.19 6.69 22.50 0.15 2.34 16 4 C -0.11 -2.99 9.98 22.35 0.22 -2.77 16 5 C -0.12 -3.58 9.98 22.36 0.22 -3.36 16 6 C 0.07 2.52 6.66 22.52 0.15 2.67 16 7 O -0.26 -11.32 9.96 -32.97 -0.33 -11.64 16 8 C -0.06 -2.85 3.99 22.81 0.09 -2.76 16 9 C -0.09 -3.98 9.75 22.11 0.22 -3.77 16 10 C -0.22 -10.80 9.74 22.48 0.22 -10.59 16 11 C 0.09 4.61 5.55 -21.28 -0.12 4.49 16 12 C -0.48 -25.04 9.04 23.39 0.21 -24.83 16 13 H 0.08 4.15 7.88 -2.91 -0.02 4.13 16 14 C 0.03 1.61 5.21 85.23 0.44 2.05 16 15 N -0.82 -41.72 10.91 21.82 0.24 -41.48 16 16 Si 0.99 36.44 29.58 68.60 2.03 38.47 16 17 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 18 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 19 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 20 C -0.17 -8.94 8.61 22.48 0.19 -8.74 16 21 C -0.10 -4.99 9.91 22.11 0.22 -4.77 16 22 C -0.17 -6.02 9.19 22.36 0.21 -5.81 16 23 C -0.17 -5.10 9.03 22.35 0.20 -4.90 16 24 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 25 H 0.12 1.28 8.14 -2.39 -0.02 1.27 16 26 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 27 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 28 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 30 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 31 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 32 H 0.11 5.93 6.24 -2.91 -0.02 5.91 16 33 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.11 4.63 6.68 -2.91 -0.02 4.61 16 35 H 0.14 3.58 6.29 -2.91 -0.02 3.56 16 Total: -1.00 -59.37 304.56 5.80 -53.57 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 1.10 Total: 29.26 kcal Atomic # 6 Polarization: -63.08 SS G_CDS: 3.74 Total: -59.33 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.24 Total: -41.48 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.31 Total: -20.48 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -59.37 5.80 -53.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072412541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.635 kcal (2) G-P(sol) polarization free energy of solvation -59.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds