Wall clock time and date at job start Mon Mar 30 2020 01:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00091 * 2 1 4 4 H 1.48499 * 109.47448 * 270.00284 * 3 2 1 5 5 H 1.48499 * 109.47252 * 30.00386 * 3 2 1 6 6 H 1.48504 * 109.47233 * 150.00411 * 3 2 1 7 7 C 1.38952 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00330 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99591 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99772 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99998 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00121 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.47458 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47458 * 179.97438 * 13 12 10 15 15 C 1.36610 * 120.92289 * 264.97958 * 14 13 12 16 16 C 1.39298 * 119.92899 * 180.02562 * 15 14 13 17 17 N 1.31108 * 121.75444 * 359.97438 * 16 15 14 18 18 C 1.33659 * 121.31783 * 0.02562 * 17 16 15 19 19 C 1.40601 * 121.07938 * 179.97438 * 18 17 16 20 20 C 1.36075 * 119.74156 * 179.97438 * 19 18 17 21 21 C 1.39361 * 121.07672 * 359.71370 * 20 19 18 22 22 C 1.36133 * 120.86948 * 0.57407 * 21 20 19 23 23 C 1.40441 * 119.60957 * 359.44833 * 22 21 20 24 24 H 0.97002 * 120.00095 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00421 * 359.97438 * 9 7 2 26 26 H 1.08996 * 109.47176 * 59.99943 * 12 10 9 27 27 H 1.09003 * 109.47535 * 300.00264 * 12 10 9 28 28 H 1.09004 * 109.46810 * 60.00080 * 13 12 10 29 29 H 1.09003 * 109.47004 * 300.00639 * 13 12 10 30 30 H 1.07992 * 120.03871 * 359.97438 * 15 14 13 31 31 H 1.08003 * 119.11739 * 179.97438 * 16 15 14 32 32 H 1.07997 * 120.13176 * 359.97438 * 19 18 17 33 33 H 1.08002 * 119.46227 * 180.02562 * 20 19 18 34 34 H 1.07998 * 119.56884 * 180.27959 * 21 20 19 35 35 H 1.08002 * 120.19708 * 179.73256 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8629 0.0000 13 6 2.2378 -6.0259 -0.0007 14 6 1.4844 -7.3310 0.0005 15 6 1.2235 -7.9899 1.1684 16 6 0.5257 -9.1953 1.1454 17 7 0.1038 -9.7270 0.0237 18 6 0.3259 -9.1337 -1.1531 19 6 -0.1284 -9.7087 -2.3531 20 6 0.1124 -9.0808 -3.5361 21 6 0.7994 -7.8691 -3.5806 22 6 1.2596 -7.2848 -2.4404 23 6 1.0295 -7.9046 -1.2014 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3906 0.0002 26 1 0.6167 -4.9209 -0.8896 27 1 0.6173 -4.9205 0.8903 28 1 2.8652 -5.9682 0.8888 29 1 2.8639 -5.9681 -0.8912 30 1 1.5585 -7.5772 2.1084 31 1 0.3270 -9.7053 2.0765 32 1 -0.6663 -10.6450 -2.3360 33 1 -0.2389 -9.5263 -4.4551 34 1 0.9732 -7.3897 -4.5326 35 1 1.7944 -6.3477 -2.4880 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076587733.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:46 Heat of formation + Delta-G solvation = -18.465456 kcal Electronic energy + Delta-G solvation = -19204.701587 eV Core-core repulsion = 16165.935621 eV Total energy + Delta-G solvation = -3038.765966 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.89100 -40.16785 -38.00083 -36.46193 -35.80402 -33.33225 -32.23360 -31.44833 -30.75582 -27.56179 -25.71038 -24.54917 -24.26845 -21.80418 -20.91130 -19.87521 -19.00127 -18.41291 -17.90331 -17.07749 -16.56221 -16.27451 -15.87077 -15.57464 -15.36558 -15.18965 -14.86461 -14.53402 -14.32856 -13.73652 -13.64772 -13.30901 -13.09905 -12.92959 -12.72793 -12.47171 -12.43441 -12.33896 -12.12375 -11.90000 -11.53458 -11.21323 -10.49005 -10.36219 -10.04658 -9.70943 -9.16790 -8.48687 -5.98198 -0.56239 -0.11271 1.00990 1.37119 1.41576 1.54341 2.01382 2.02643 2.29003 3.06452 3.18650 3.19752 3.41673 3.61342 3.75651 3.85529 3.99388 4.08261 4.20145 4.27173 4.33131 4.40378 4.54353 4.60967 4.71802 4.75573 4.90535 5.08048 5.14418 5.16703 5.22614 5.39566 5.45710 5.56790 5.64676 5.95117 5.97175 6.55325 6.94496 7.09111 7.52553 8.06696 8.68598 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.029006 B = 0.003788 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.080759 B = 7389.974880 C = 7824.936401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.081 0.919 9 N -0.571 5.571 10 C 0.439 3.561 11 O -0.633 6.633 12 C -0.109 4.109 13 C -0.054 4.054 14 C -0.024 4.024 15 C -0.178 4.178 16 C 0.133 3.867 17 N -0.503 5.503 18 C 0.103 3.897 19 C -0.111 4.111 20 C -0.093 4.093 21 C -0.119 4.119 22 C -0.112 4.112 23 C -0.115 4.115 24 H 0.278 0.722 25 H 0.396 0.604 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.192 0.808 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.150 0.850 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.815 -17.086 -3.071 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.099 0.901 9 N -0.207 5.207 10 C 0.227 3.773 11 O -0.521 6.521 12 C -0.149 4.149 13 C -0.092 4.092 14 C -0.032 4.032 15 C -0.197 4.197 16 C -0.039 4.039 17 N -0.212 5.212 18 C -0.018 4.018 19 C -0.129 4.129 20 C -0.113 4.113 21 C -0.136 4.136 22 C -0.131 4.131 23 C -0.117 4.117 24 H 0.088 0.912 25 H 0.230 0.770 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.176 0.824 31 H 0.208 0.792 32 H 0.164 0.836 33 H 0.179 0.821 34 H 0.168 0.832 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.645 -17.727 -3.175 18.203 hybrid contribution 0.370 1.827 0.126 1.869 sum -2.276 -15.900 -3.049 16.349 Atomic orbital electron populations 1.69676 1.06928 1.29398 1.50078 1.26063 0.96509 1.02502 0.96082 0.84924 0.77930 0.76775 0.78709 1.19574 1.19553 1.19626 1.19716 0.92804 0.84040 1.50121 0.90100 1.41997 1.09381 1.04864 1.64487 1.20846 0.88083 0.86205 0.82189 1.90491 1.15868 1.88219 1.57549 1.21362 0.98440 0.90379 1.04721 1.20186 0.96227 0.88520 1.04245 1.20275 0.94617 0.95376 0.92970 1.22104 1.01172 0.97061 0.99372 1.23468 0.91149 0.92224 0.97034 1.68069 1.20713 1.33948 0.98455 1.19243 0.97071 0.91992 0.93479 1.21038 1.00531 1.01114 0.90233 1.21279 0.96655 0.94569 0.98752 1.21295 0.97373 0.95928 0.99035 1.21264 0.99800 1.00107 0.91891 1.18930 1.01228 0.96667 0.94878 0.91233 0.76983 0.89031 0.88292 0.90042 0.90841 0.82352 0.79166 0.83588 0.82070 0.83232 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.55 13.05 21.66 0.28 -49.26 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 3 Si 0.99 42.49 29.55 68.60 2.03 44.51 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.34 -19.04 9.68 84.04 0.81 -18.23 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -29.23 5.29 -306.98 -1.62 -30.85 16 10 C 0.44 20.51 7.78 87.66 0.68 21.19 16 11 O -0.63 -34.20 15.56 -3.08 -0.05 -34.25 16 12 C -0.11 -3.67 5.68 29.85 0.17 -3.50 16 13 C -0.05 -1.66 4.09 29.85 0.12 -1.53 16 14 C -0.02 -0.66 5.17 -19.64 -0.10 -0.76 16 15 C -0.18 -4.02 9.70 22.14 0.21 -3.81 16 16 C 0.13 2.87 11.14 85.06 0.95 3.82 16 17 N -0.50 -13.25 10.34 -188.64 -1.95 -15.20 16 18 C 0.10 2.78 6.60 40.30 0.27 3.04 16 19 C -0.11 -2.42 9.98 22.34 0.22 -2.19 16 20 C -0.09 -1.68 9.94 22.04 0.22 -1.46 16 21 C -0.12 -2.41 9.95 22.05 0.22 -2.19 16 22 C -0.11 -2.86 9.31 22.32 0.21 -2.65 16 23 C -0.12 -3.19 5.74 -21.28 -0.12 -3.31 16 24 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 25 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 26 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 27 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.08 2.54 8.03 -2.38 -0.02 2.52 16 29 H 0.07 2.40 6.76 -2.39 -0.02 2.38 16 30 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.19 2.61 8.06 -2.91 -0.02 2.58 16 32 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.13 3.35 6.57 -2.91 -0.02 3.33 16 Total: -1.00 -69.12 306.69 3.40 -65.71 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.39 Total: 31.06 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 4.33 Total: -11.73 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -3.29 Total: -95.31 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.05 Total: -34.25 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -69.12 3.40 -65.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076587733.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.247 kcal (2) G-P(sol) polarization free energy of solvation -69.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds