Wall clock time and date at job start Mon Mar 30 2020 01:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99869 * 2 1 4 4 H 1.48503 * 109.47201 * 274.78897 * 3 2 1 5 5 H 1.48503 * 109.47262 * 34.79015 * 3 2 1 6 6 H 1.48500 * 109.46982 * 154.78657 * 3 2 1 7 7 C 1.38811 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99921 * 196.36252 * 7 2 1 9 9 N 1.36940 * 119.99988 * 16.63493 * 7 2 1 10 10 C 1.47079 * 120.88227 * 26.76750 * 9 7 2 11 11 C 1.53691 * 108.27390 * 128.75793 * 10 9 7 12 12 N 1.46895 * 109.25880 * 54.08311 * 11 10 9 13 13 C 1.46905 * 110.99793 * 172.60873 * 12 11 10 14 14 C 1.53002 * 109.46795 * 201.00165 * 13 12 11 15 15 F 1.39899 * 109.47404 * 294.02386 * 14 13 12 16 16 F 1.39900 * 109.47064 * 54.02364 * 14 13 12 17 17 C 1.53003 * 109.47314 * 174.02364 * 14 13 12 18 18 F 1.39901 * 109.46706 * 59.99772 * 17 14 13 19 19 F 1.39893 * 109.47402 * 180.02562 * 17 14 13 20 20 C 1.46899 * 111.26962 * 296.75110 * 12 11 10 21 21 C 1.47081 * 120.87984 * 207.04965 * 9 7 2 22 22 H 0.96997 * 120.00179 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.62790 * 248.52490 * 10 9 7 24 24 H 1.08997 * 109.62968 * 9.10083 * 10 9 7 25 25 H 1.09004 * 109.64674 * 294.07670 * 11 10 9 26 26 H 1.08998 * 109.41883 * 173.94865 * 11 10 9 27 27 H 1.08994 * 109.47477 * 321.00008 * 13 12 11 28 28 H 1.08998 * 109.47236 * 81.00724 * 13 12 11 29 29 H 1.09004 * 109.46952 * 300.00366 * 17 14 13 30 30 H 1.08997 * 109.49527 * 303.15019 * 20 12 11 31 31 H 1.09003 * 109.51954 * 183.07492 * 20 12 11 32 32 H 1.09011 * 109.62590 * 350.89582 * 21 9 7 33 33 H 1.08998 * 109.63321 * 111.47249 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3965 2.1049 -1.3952 5 1 1.5019 2.6213 0.7989 6 1 3.5947 1.4131 0.5964 7 6 2.0103 -1.2022 -0.0005 8 1 3.0574 -1.2212 0.2629 9 7 1.3685 -2.3631 -0.3406 10 6 0.2001 -2.3461 -1.2337 11 6 0.4389 -3.3652 -2.3591 12 7 0.7503 -4.6741 -1.7695 13 6 0.8134 -5.7157 -2.8036 14 6 0.6139 -7.0882 -2.1576 15 9 1.6932 -7.3672 -1.3123 16 9 -0.5717 -7.0862 -1.4148 17 6 0.5306 -8.1580 -3.2483 18 9 1.7161 -8.1599 -3.9910 19 9 0.3476 -9.4129 -2.6577 20 6 1.9970 -4.6262 -0.9939 21 6 1.8257 -3.6595 0.1827 22 1 -0.4850 0.8400 0.0004 23 1 -0.6937 -2.6185 -0.6725 24 1 0.0791 -1.3500 -1.6594 25 1 1.2736 -3.0377 -2.9791 26 1 -0.4593 -3.4464 -2.9711 27 1 0.0292 -5.5437 -3.5408 28 1 1.7864 -5.6828 -3.2936 29 1 -0.3104 -7.9406 -3.9069 30 1 2.8098 -4.2811 -1.6329 31 1 2.2291 -5.6218 -0.6157 32 1 2.7800 -3.5320 0.6938 33 1 1.0851 -4.0557 0.8774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079311773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:21 Heat of formation + Delta-G solvation = -163.119208 kcal Electronic energy + Delta-G solvation = -21944.507258 eV Core-core repulsion = 17926.842669 eV Total energy + Delta-G solvation = -4017.664589 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.94835 -48.66198 -47.61236 -47.05097 -38.16041 -34.69279 -32.01201 -30.68344 -29.89591 -27.24607 -24.89827 -22.91835 -22.54944 -21.82165 -19.24349 -18.59245 -18.26659 -17.81359 -16.86333 -16.68473 -16.23968 -15.16134 -14.72989 -14.50229 -14.40535 -14.30738 -14.11037 -13.83091 -13.67686 -13.46255 -13.43151 -13.10485 -13.03347 -12.84548 -12.13854 -11.90860 -11.43888 -11.15042 -10.98852 -10.75917 -10.52609 -10.30884 -10.08990 -9.78807 -9.64006 -8.53967 -8.07483 -6.69916 -5.80549 -3.22477 2.52519 3.36198 3.43523 3.45081 3.51621 3.59194 3.73228 3.86252 4.30331 4.48500 4.51441 4.73211 5.18768 5.30445 5.37398 5.40538 5.79960 5.85323 6.08937 6.12777 6.25508 6.45402 6.62659 6.89884 7.15973 7.29787 7.52187 7.62574 7.78021 8.41017 9.18733 9.81566 10.40307 11.28397 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.048422 B = 0.004464 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.115172 B = 6271.592052 C = 6313.341902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.596 5.596 10 C 0.178 3.822 11 C 0.036 3.964 12 N -0.524 5.524 13 C 0.009 3.991 14 C 0.260 3.740 15 F -0.179 7.179 16 F -0.166 7.166 17 C 0.234 3.766 18 F -0.183 7.183 19 F -0.186 7.186 20 C 0.027 3.973 21 C 0.150 3.850 22 H 0.254 0.746 23 H 0.029 0.971 24 H 0.092 0.908 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 -14.455 -8.899 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.093 4.093 12 N -0.249 5.249 13 C -0.121 4.121 14 C 0.221 3.779 15 F -0.159 7.159 16 F -0.146 7.146 17 C 0.179 3.821 18 F -0.164 7.164 19 F -0.167 7.167 20 C -0.102 4.102 21 C 0.023 3.977 22 H 0.064 0.936 23 H 0.047 0.953 24 H 0.110 0.890 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.159 0.841 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.590 -14.426 -8.503 16.756 hybrid contribution 1.095 0.843 -0.417 1.443 sum 0.505 -13.584 -8.920 16.259 Atomic orbital electron populations 1.70022 1.05208 1.25500 1.54149 1.25040 0.95329 0.98380 1.00929 0.86249 0.79156 0.83690 0.77546 1.21528 1.21720 1.20400 1.19227 0.92459 0.84684 1.41810 0.91563 1.44160 1.33934 1.01464 1.52342 1.20977 0.89112 0.96320 0.88377 1.23078 0.98790 0.88470 0.98918 1.61905 1.35421 1.05509 1.22040 1.23037 1.04008 0.89728 0.95330 1.22179 0.74080 0.96774 0.84832 1.93007 1.55156 1.94492 1.73282 1.93106 1.46061 1.97246 1.78234 1.22901 0.87681 0.81195 0.90365 1.93054 1.49846 1.96425 1.77082 1.93059 1.95410 1.43145 1.85118 1.23035 0.88823 1.01142 0.97191 1.20967 0.98005 0.86265 0.92452 0.93583 0.95276 0.89026 0.95116 0.91788 0.87770 0.90999 0.84131 0.94981 0.90325 0.92373 0.95510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 11.14 55.49 0.62 -25.46 16 2 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 3 Si 0.90 21.56 29.58 -169.99 -5.03 16.53 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.25 -6.93 9.63 -15.06 -0.15 -7.07 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.60 -15.09 3.03 -171.73 -0.52 -15.61 16 10 C 0.18 4.23 5.44 -3.37 -0.02 4.21 16 11 C 0.04 0.66 5.60 -3.47 -0.02 0.64 16 12 N -0.52 -9.08 4.37 -234.03 -1.02 -10.10 16 13 C 0.01 0.12 4.47 -3.82 -0.02 0.10 16 14 C 0.26 3.29 1.78 -26.73 -0.05 3.25 16 15 F -0.18 -2.66 14.36 2.25 0.03 -2.62 16 16 F -0.17 -2.41 16.86 2.25 0.04 -2.38 16 17 C 0.23 2.24 4.83 37.16 0.18 2.42 16 18 F -0.18 -1.92 16.91 2.25 0.04 -1.88 16 19 F -0.19 -2.14 17.30 2.25 0.04 -2.10 16 20 C 0.03 0.50 5.40 -3.70 -0.02 0.48 16 21 C 0.15 3.26 6.69 -3.60 -0.02 3.23 16 22 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.02 7.89 -51.93 -0.41 0.61 16 27 H 0.10 1.03 7.75 -51.93 -0.40 0.63 16 28 H 0.07 0.87 7.81 -51.93 -0.41 0.47 16 29 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.34 5.42 -51.93 -0.28 1.06 16 32 H 0.06 1.22 7.95 -51.92 -0.41 0.80 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 283.52 15.07 4.27 4.27 Total: -1.00 -30.78 283.52 -5.62 -36.41 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -3.89 Total: -4.26 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -0.20 Total: 7.21 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.93 Total: -51.17 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 0.15 Total: -8.98 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.78 -5.62 -36.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079311773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.712 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds