Wall clock time and date at job start Mon Mar 30 2020 01:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99869 * 2 1 4 4 H 1.48503 * 109.47201 * 274.78897 * 3 2 1 5 5 H 1.48503 * 109.47262 * 34.79015 * 3 2 1 6 6 H 1.48500 * 109.46982 * 154.78657 * 3 2 1 7 7 C 1.38811 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99921 * 196.36252 * 7 2 1 9 9 N 1.36940 * 119.99988 * 16.63493 * 7 2 1 10 10 C 1.47079 * 120.88227 * 26.76750 * 9 7 2 11 11 C 1.53691 * 108.27390 * 128.75793 * 10 9 7 12 12 N 1.46895 * 109.25880 * 54.08311 * 11 10 9 13 13 C 1.46905 * 110.99793 * 172.60873 * 12 11 10 14 14 C 1.53002 * 109.46795 * 201.00165 * 13 12 11 15 15 F 1.39899 * 109.47404 * 294.02386 * 14 13 12 16 16 F 1.39900 * 109.47064 * 54.02364 * 14 13 12 17 17 C 1.53003 * 109.47314 * 174.02364 * 14 13 12 18 18 F 1.39901 * 109.46706 * 59.99772 * 17 14 13 19 19 F 1.39893 * 109.47402 * 180.02562 * 17 14 13 20 20 C 1.46899 * 111.26962 * 296.75110 * 12 11 10 21 21 C 1.47081 * 120.87984 * 207.04965 * 9 7 2 22 22 H 0.96997 * 120.00179 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.62790 * 248.52490 * 10 9 7 24 24 H 1.08997 * 109.62968 * 9.10083 * 10 9 7 25 25 H 1.09004 * 109.64674 * 294.07670 * 11 10 9 26 26 H 1.08998 * 109.41883 * 173.94865 * 11 10 9 27 27 H 1.08994 * 109.47477 * 321.00008 * 13 12 11 28 28 H 1.08998 * 109.47236 * 81.00724 * 13 12 11 29 29 H 1.09004 * 109.46952 * 300.00366 * 17 14 13 30 30 H 1.08997 * 109.49527 * 303.15019 * 20 12 11 31 31 H 1.09003 * 109.51954 * 183.07492 * 20 12 11 32 32 H 1.09011 * 109.62590 * 350.89582 * 21 9 7 33 33 H 1.08998 * 109.63321 * 111.47249 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3965 2.1049 -1.3952 5 1 1.5019 2.6213 0.7989 6 1 3.5947 1.4131 0.5964 7 6 2.0103 -1.2022 -0.0005 8 1 3.0574 -1.2212 0.2629 9 7 1.3685 -2.3631 -0.3406 10 6 0.2001 -2.3461 -1.2337 11 6 0.4389 -3.3652 -2.3591 12 7 0.7503 -4.6741 -1.7695 13 6 0.8134 -5.7157 -2.8036 14 6 0.6139 -7.0882 -2.1576 15 9 1.6932 -7.3672 -1.3123 16 9 -0.5717 -7.0862 -1.4148 17 6 0.5306 -8.1580 -3.2483 18 9 1.7161 -8.1599 -3.9910 19 9 0.3476 -9.4129 -2.6577 20 6 1.9970 -4.6262 -0.9939 21 6 1.8257 -3.6595 0.1827 22 1 -0.4850 0.8400 0.0004 23 1 -0.6937 -2.6185 -0.6725 24 1 0.0791 -1.3500 -1.6594 25 1 1.2736 -3.0377 -2.9791 26 1 -0.4593 -3.4464 -2.9711 27 1 0.0292 -5.5437 -3.5408 28 1 1.7864 -5.6828 -3.2936 29 1 -0.3104 -7.9406 -3.9069 30 1 2.8098 -4.2811 -1.6329 31 1 2.2291 -5.6218 -0.6157 32 1 2.7800 -3.5320 0.6938 33 1 1.0851 -4.0557 0.8774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079311773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:21 Heat of formation + Delta-G solvation = -183.399471 kcal Electronic energy + Delta-G solvation = -21945.386676 eV Core-core repulsion = 17926.842669 eV Total energy + Delta-G solvation = -4018.544007 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.83359 -49.58488 -48.49123 -48.02026 -39.69230 -36.39204 -33.66019 -32.10515 -31.55517 -28.72917 -26.37313 -24.51775 -24.17248 -22.90321 -20.94473 -19.49098 -19.26077 -18.70957 -18.57275 -17.69165 -17.29208 -16.90833 -16.21273 -15.86014 -15.63935 -15.33927 -15.28250 -15.12803 -14.94912 -14.87876 -14.61970 -14.56278 -14.47770 -13.85635 -13.38711 -13.16056 -12.97616 -12.96346 -12.61760 -12.34233 -12.23351 -12.00878 -11.84106 -11.57494 -11.31113 -10.60326 -9.45131 -8.71460 -7.89171 -5.34979 1.47155 1.47794 1.57703 1.67481 2.49015 2.56689 2.80576 2.82818 3.03015 3.22696 3.27541 3.65582 3.74868 3.82332 4.19118 4.21017 4.31173 4.39347 4.56091 4.61021 4.68261 4.83880 4.98850 5.12383 5.32918 5.59577 5.67417 5.98979 6.00874 6.35764 7.11962 7.81075 8.35812 9.17702 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.048422 B = 0.004464 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.115172 B = 6271.592052 C = 6313.341902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.970 3.030 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.614 5.614 10 C 0.182 3.818 11 C 0.053 3.947 12 N -0.541 5.541 13 C 0.010 3.990 14 C 0.248 3.752 15 F -0.197 7.197 16 F -0.180 7.180 17 C 0.242 3.758 18 F -0.187 7.187 19 F -0.199 7.199 20 C 0.041 3.959 21 C 0.145 3.855 22 H 0.251 0.749 23 H -0.002 1.002 24 H 0.063 0.937 25 H 0.032 0.968 26 H 0.096 0.904 27 H 0.142 0.858 28 H 0.085 0.915 29 H 0.195 0.805 30 H 0.032 0.968 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 -15.360 -10.730 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.798 3.202 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.397 4.397 8 H 0.084 0.916 9 N -0.338 5.338 10 C 0.056 3.944 11 C -0.076 4.076 12 N -0.265 5.265 13 C -0.119 4.119 14 C 0.210 3.790 15 F -0.178 7.178 16 F -0.160 7.160 17 C 0.188 3.812 18 F -0.168 7.168 19 F -0.180 7.180 20 C -0.087 4.087 21 C 0.019 3.981 22 H 0.061 0.939 23 H 0.016 0.984 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.114 0.886 27 H 0.160 0.840 28 H 0.103 0.897 29 H 0.212 0.788 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -0.195 -15.369 -10.344 18.527 hybrid contribution 0.967 1.071 0.212 1.458 sum 0.772 -14.299 -10.132 17.541 Atomic orbital electron populations 1.70182 1.06635 1.25963 1.55365 1.25799 0.96091 1.01451 1.01034 0.85210 0.78073 0.79400 0.77492 1.20969 1.22117 1.19468 1.19543 0.92709 0.85893 1.41513 0.91621 1.44443 1.34166 1.02051 1.53138 1.20779 0.87637 0.96608 0.89344 1.22746 1.00323 0.87812 0.96677 1.61736 1.34858 1.05916 1.24019 1.23201 1.06249 0.87894 0.94591 1.22607 0.73032 0.98154 0.85166 1.92965 1.56038 1.94636 1.74140 1.93079 1.46763 1.97405 1.78797 1.23197 0.88992 0.79420 0.89640 1.93051 1.50596 1.96323 1.76862 1.93037 1.95479 1.43931 1.85525 1.22786 0.89508 1.00479 0.95977 1.21072 0.97336 0.85762 0.93896 0.93944 0.98357 0.91916 0.95002 0.88568 0.84026 0.89682 0.78815 0.94937 0.88975 0.92245 0.97174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.32 11.14 21.65 0.24 -55.08 16 2 C -0.05 -2.70 4.94 84.86 0.42 -2.28 16 3 Si 0.97 44.71 29.58 68.60 2.03 46.74 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.27 -14.85 9.63 84.03 0.81 -14.04 16 8 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 9 N -0.61 -31.62 3.03 -697.23 -2.11 -33.73 16 10 C 0.18 8.79 5.44 86.50 0.47 9.26 16 11 C 0.05 1.87 5.60 86.54 0.48 2.35 16 12 N -0.54 -17.63 4.37 -894.32 -3.91 -21.54 16 13 C 0.01 0.21 4.47 86.30 0.39 0.60 16 14 C 0.25 5.60 1.78 30.60 0.05 5.65 16 15 F -0.20 -5.52 14.36 44.97 0.65 -4.87 16 16 F -0.18 -4.85 16.86 44.97 0.76 -4.09 16 17 C 0.24 3.73 4.83 71.98 0.35 4.08 16 18 F -0.19 -3.28 16.91 44.97 0.76 -2.52 16 19 F -0.20 -4.05 17.30 44.97 0.78 -3.28 16 20 C 0.04 1.47 5.40 86.38 0.47 1.94 16 21 C 0.15 6.39 6.69 86.35 0.58 6.97 16 22 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 23 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 24 H 0.06 3.36 6.12 -2.39 -0.01 3.35 16 25 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.10 2.77 7.89 -2.39 -0.02 2.75 16 27 H 0.14 2.05 7.75 -2.39 -0.02 2.03 16 28 H 0.09 1.71 7.81 -2.39 -0.02 1.70 16 29 H 0.20 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 3.03 5.42 -2.39 -0.01 3.02 16 32 H 0.06 2.52 7.95 -2.38 -0.02 2.50 16 33 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -68.36 283.52 4.33 -64.03 By element: Atomic # 1 Polarization: -1.31 SS G_CDS: 1.13 Total: -0.18 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 4.02 Total: 14.51 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -5.78 Total: -110.35 kcal Atomic # 9 Polarization: -17.70 SS G_CDS: 2.94 Total: -14.76 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -68.36 4.33 -64.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079311773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.372 kcal (2) G-P(sol) polarization free energy of solvation -68.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds