Wall clock time and date at job start Mon Mar 30 2020 01:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00362 * 2 1 4 4 H 1.48505 * 109.47027 * 270.00177 * 3 2 1 5 5 H 1.48503 * 109.47148 * 30.00036 * 3 2 1 6 6 H 1.48499 * 109.47295 * 150.00264 * 3 2 1 7 7 C 1.37883 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99743 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00109 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47413 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47235 * 180.02562 * 10 9 7 12 12 N 1.28385 * 119.10612 * 270.25315 * 11 10 9 13 13 C 1.31223 * 122.29564 * 180.27928 * 12 11 10 14 14 C 1.48356 * 119.87411 * 179.74879 * 13 12 11 15 15 C 1.39353 * 120.12050 * 179.44696 * 14 13 12 16 16 C 1.38016 * 119.87241 * 179.76333 * 15 14 13 17 17 C 1.38325 * 120.12426 * 0.51671 * 16 15 14 18 18 C 1.38324 * 120.24812 * 359.73338 * 17 16 15 19 19 C 1.38014 * 120.12362 * 0.02562 * 18 17 16 20 20 C 1.41449 * 120.24930 * 359.46765 * 13 12 11 21 21 C 1.36363 * 118.24411 * 0.25708 * 20 13 12 22 22 C 1.34620 * 119.10806 * 90.00270 * 11 10 9 23 23 O 1.22040 * 120.24229 * 359.97438 * 22 11 10 24 24 H 0.97004 * 119.99655 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47151 * 60.00164 * 9 7 2 26 26 H 1.09003 * 109.47511 * 300.00491 * 9 7 2 27 27 H 1.09006 * 109.46898 * 59.99924 * 10 9 7 28 28 H 1.09003 * 109.47114 * 300.00650 * 10 9 7 29 29 H 1.08002 * 120.06426 * 0.02562 * 15 14 13 30 30 H 1.08003 * 119.93931 * 180.27215 * 16 15 14 31 31 H 1.08002 * 119.87406 * 179.76562 * 17 16 15 32 32 H 1.08000 * 119.94416 * 180.02562 * 18 17 16 33 33 H 1.07994 * 120.06787 * 180.02562 * 19 18 17 34 34 H 1.07997 * 120.87542 * 180.27490 * 20 13 12 35 35 H 1.08005 * 121.04342 * 180.02562 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0023 11 7 5.4865 -2.6367 -0.0022 12 7 6.1110 -2.6308 -1.1239 13 6 7.4212 -2.6358 -1.1969 14 6 8.0875 -2.6342 -2.5225 15 6 9.4785 -2.6279 -2.6060 16 6 10.0930 -2.6313 -3.8418 17 6 9.3308 -2.6303 -4.9961 18 6 7.9497 -2.6313 -4.9191 19 6 7.3245 -2.6329 -3.6887 20 6 8.2006 -2.6367 -0.0166 21 6 7.5538 -2.6377 1.1839 22 6 6.1413 -2.6377 1.1740 23 8 5.5191 -2.6381 2.2239 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1499 -0.8925 28 1 3.6584 -3.1511 0.8875 29 1 10.0745 -2.6245 -1.7053 30 1 11.1710 -2.6309 -3.9077 31 1 9.8159 -2.6292 -5.9610 32 1 7.3594 -2.6309 -5.8235 33 1 6.2462 -2.6341 -3.6297 34 1 9.2795 -2.6364 -0.0649 35 1 8.1042 -2.6380 2.1132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082305129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:27 Heat of formation + Delta-G solvation = 51.806366 kcal Electronic energy + Delta-G solvation = -19446.510028 eV Core-core repulsion = 16410.791276 eV Total energy + Delta-G solvation = -3035.718751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.81766 -39.26212 -37.40954 -35.44481 -33.19514 -32.12772 -31.36009 -30.89746 -29.25371 -26.16224 -24.62040 -23.88840 -22.20362 -21.97238 -20.81437 -18.10621 -17.88650 -17.02815 -16.48067 -16.13116 -16.02121 -14.95301 -14.79433 -14.34351 -14.20587 -13.63547 -13.53908 -13.39825 -13.28769 -12.92862 -12.83087 -12.49247 -11.81028 -11.60049 -11.34087 -11.11146 -11.02488 -10.91868 -10.21658 -10.01670 -9.93239 -9.49154 -9.31800 -9.28149 -9.08992 -8.61887 -7.87865 -6.12780 -4.13023 0.56084 0.87959 1.26856 2.05610 2.53860 3.26896 3.34461 3.39704 3.47304 3.87673 4.03208 4.39080 4.46788 4.58204 4.76700 4.83955 4.92740 5.02466 5.21200 5.29558 5.42253 5.56415 5.74836 5.78276 5.82816 5.88861 6.00239 6.05409 6.13704 6.31450 6.33942 6.41088 6.46823 6.80814 7.06022 7.15906 7.61535 7.86296 8.37946 8.40939 8.88311 9.47869 10.99879 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018739 B = 0.005058 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.825484 B = 5534.808230 C = 6429.798336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.075 3.925 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.078 0.922 9 C -0.020 4.020 10 C 0.119 3.881 11 N -0.325 5.325 12 N -0.192 5.192 13 C 0.066 3.934 14 C -0.018 4.018 15 C -0.107 4.107 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.089 4.089 20 C -0.063 4.063 21 C -0.192 4.192 22 C 0.470 3.530 23 O -0.524 6.524 24 H 0.266 0.734 25 H 0.024 0.976 26 H 0.020 0.980 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.205 -6.001 -7.997 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.096 0.904 9 C -0.058 4.058 10 C 0.001 3.999 11 N -0.145 5.145 12 N -0.018 5.018 13 C -0.100 4.100 14 C -0.020 4.020 15 C -0.127 4.127 16 C -0.139 4.139 17 C -0.137 4.137 18 C -0.137 4.137 19 C -0.108 4.108 20 C -0.087 4.087 21 C -0.222 4.222 22 C 0.268 3.732 23 O -0.401 6.401 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.114 0.886 28 H 0.121 0.879 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 20.790 -5.888 -7.795 22.970 hybrid contribution 1.020 1.002 0.590 1.546 sum 21.809 -4.886 -7.205 23.482 Atomic orbital electron populations 1.69887 1.06186 1.27134 1.50225 1.24908 0.94711 0.99018 0.94135 0.86811 0.80438 0.83697 0.78616 1.20064 1.21009 1.19216 1.20810 0.88102 0.95018 1.52149 0.90421 1.19884 0.98105 0.90499 0.97340 1.22421 0.70218 1.02657 1.04627 1.47324 1.10920 1.54445 1.01860 1.70955 1.10713 1.07027 1.13139 1.20062 0.88107 1.07957 0.93877 1.18097 0.92547 1.01675 0.89712 1.21115 0.93009 1.00395 0.98186 1.21013 0.99843 1.00889 0.92173 1.21240 0.94106 0.99874 0.98450 1.21161 0.94728 1.00139 0.97694 1.21381 1.01006 0.97191 0.91250 1.22224 1.01755 0.93157 0.91521 1.22684 0.93343 1.06071 1.00072 1.18100 0.89831 0.80693 0.84610 1.91001 1.69324 1.50395 1.29424 0.92462 0.95780 0.96186 0.88578 0.87886 0.85631 0.85804 0.86075 0.85666 0.84596 0.83405 0.82159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 2 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.73 6.54 56.52 0.37 -6.36 16 7 C -0.52 -14.91 9.66 -34.44 -0.33 -15.25 16 8 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 9 C -0.02 -0.49 4.36 -27.88 -0.12 -0.62 16 10 C 0.12 2.48 5.49 -4.04 -0.02 2.46 16 11 N -0.33 -6.16 3.22 -63.32 -0.20 -6.36 16 12 N -0.19 -3.24 9.98 33.47 0.33 -2.91 16 13 C 0.07 0.91 6.82 -82.74 -0.56 0.35 16 14 C -0.02 -0.22 5.88 -104.90 -0.62 -0.83 16 15 C -0.11 -0.97 9.43 -39.25 -0.37 -1.34 16 16 C -0.12 -0.97 10.03 -39.63 -0.40 -1.37 16 17 C -0.12 -0.98 10.04 -39.52 -0.40 -1.38 16 18 C -0.12 -1.15 10.03 -39.63 -0.40 -1.55 16 19 C -0.09 -1.05 9.58 -39.24 -0.38 -1.42 16 20 C -0.06 -0.73 9.50 -39.04 -0.37 -1.10 16 21 C -0.19 -2.65 10.12 -39.11 -0.40 -3.05 16 22 C 0.47 8.84 7.47 -15.18 -0.11 8.73 16 23 O -0.52 -11.70 16.62 4.88 0.08 -11.61 16 24 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 26 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 27 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 28 H 0.10 2.20 7.36 -51.93 -0.38 1.82 16 29 H 0.13 0.82 6.22 -52.49 -0.33 0.49 16 30 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.14 1.71 7.55 -52.49 -0.40 1.32 16 34 H 0.15 1.06 6.29 -52.49 -0.33 0.73 16 35 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 304.73 15.07 4.59 4.59 Total: -1.00 -33.83 304.73 -7.57 -41.40 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -3.90 Total: -1.61 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -4.57 Total: -14.27 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.90 Total: -36.04 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.83 -7.57 -41.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082305129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.207 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds