Wall clock time and date at job start Mon Mar 30 2020 01:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00362 * 2 1 4 4 H 1.48505 * 109.47027 * 270.00177 * 3 2 1 5 5 H 1.48503 * 109.47148 * 30.00036 * 3 2 1 6 6 H 1.48499 * 109.47295 * 150.00264 * 3 2 1 7 7 C 1.37883 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99743 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00109 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47413 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47235 * 180.02562 * 10 9 7 12 12 N 1.28385 * 119.10612 * 270.25315 * 11 10 9 13 13 C 1.31223 * 122.29564 * 180.27928 * 12 11 10 14 14 C 1.48356 * 119.87411 * 179.74879 * 13 12 11 15 15 C 1.39353 * 120.12050 * 179.44696 * 14 13 12 16 16 C 1.38016 * 119.87241 * 179.76333 * 15 14 13 17 17 C 1.38325 * 120.12426 * 0.51671 * 16 15 14 18 18 C 1.38324 * 120.24812 * 359.73338 * 17 16 15 19 19 C 1.38014 * 120.12362 * 0.02562 * 18 17 16 20 20 C 1.41449 * 120.24930 * 359.46765 * 13 12 11 21 21 C 1.36363 * 118.24411 * 0.25708 * 20 13 12 22 22 C 1.34620 * 119.10806 * 90.00270 * 11 10 9 23 23 O 1.22040 * 120.24229 * 359.97438 * 22 11 10 24 24 H 0.97004 * 119.99655 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47151 * 60.00164 * 9 7 2 26 26 H 1.09003 * 109.47511 * 300.00491 * 9 7 2 27 27 H 1.09006 * 109.46898 * 59.99924 * 10 9 7 28 28 H 1.09003 * 109.47114 * 300.00650 * 10 9 7 29 29 H 1.08002 * 120.06426 * 0.02562 * 15 14 13 30 30 H 1.08003 * 119.93931 * 180.27215 * 16 15 14 31 31 H 1.08002 * 119.87406 * 179.76562 * 17 16 15 32 32 H 1.08000 * 119.94416 * 180.02562 * 18 17 16 33 33 H 1.07994 * 120.06787 * 180.02562 * 19 18 17 34 34 H 1.07997 * 120.87542 * 180.27490 * 20 13 12 35 35 H 1.08005 * 121.04342 * 180.02562 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0023 11 7 5.4865 -2.6367 -0.0022 12 7 6.1110 -2.6308 -1.1239 13 6 7.4212 -2.6358 -1.1969 14 6 8.0875 -2.6342 -2.5225 15 6 9.4785 -2.6279 -2.6060 16 6 10.0930 -2.6313 -3.8418 17 6 9.3308 -2.6303 -4.9961 18 6 7.9497 -2.6313 -4.9191 19 6 7.3245 -2.6329 -3.6887 20 6 8.2006 -2.6367 -0.0166 21 6 7.5538 -2.6377 1.1839 22 6 6.1413 -2.6377 1.1740 23 8 5.5191 -2.6381 2.2239 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1499 -0.8925 28 1 3.6584 -3.1511 0.8875 29 1 10.0745 -2.6245 -1.7053 30 1 11.1710 -2.6309 -3.9077 31 1 9.8159 -2.6292 -5.9610 32 1 7.3594 -2.6309 -5.8235 33 1 6.2462 -2.6341 -3.6297 34 1 9.2795 -2.6364 -0.0649 35 1 8.1042 -2.6380 2.1132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082305129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:27 Heat of formation + Delta-G solvation = 30.140996 kcal Electronic energy + Delta-G solvation = -19447.449509 eV Core-core repulsion = 16410.791276 eV Total energy + Delta-G solvation = -3036.658232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.08262 -40.08358 -38.72867 -36.84654 -35.14358 -33.17811 -32.95977 -31.75499 -30.54093 -27.75465 -25.84552 -25.18152 -23.31227 -22.90873 -22.40050 -19.46900 -19.25898 -18.50883 -17.68010 -17.53140 -17.19453 -16.34179 -16.00141 -15.61354 -15.20879 -15.19210 -14.86459 -14.63833 -14.54268 -14.28046 -13.91832 -13.84876 -13.42702 -13.07023 -12.66878 -12.58219 -12.21066 -12.03353 -11.95733 -11.85417 -11.65460 -11.39694 -10.88386 -10.72620 -10.23923 -9.78863 -9.06507 -8.40767 -6.46604 -0.50258 -0.06291 0.57068 1.02186 1.19355 1.24632 1.27459 1.38568 2.25082 2.35627 2.93221 2.94879 3.05096 3.46156 3.70261 3.80535 4.09203 4.19122 4.19830 4.23129 4.35210 4.50434 4.52177 4.61127 4.64068 4.69792 4.93183 4.94768 5.07445 5.12707 5.19361 5.24112 5.45397 5.60887 5.66726 5.68649 6.09981 6.12044 6.50488 6.58651 7.17020 7.18305 8.75254 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018739 B = 0.005058 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.825484 B = 5534.808230 C = 6429.798336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.019 3.981 3 Si 0.943 3.057 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.535 4.535 8 H 0.048 0.952 9 C -0.007 4.007 10 C 0.133 3.867 11 N -0.341 5.341 12 N -0.240 5.240 13 C 0.090 3.910 14 C -0.049 4.049 15 C -0.096 4.096 16 C -0.120 4.120 17 C -0.110 4.110 18 C -0.131 4.131 19 C -0.110 4.110 20 C -0.039 4.039 21 C -0.193 4.193 22 C 0.451 3.549 23 O -0.581 6.581 24 H 0.271 0.729 25 H 0.006 0.994 26 H 0.023 0.977 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.149 0.851 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.207 0.793 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.273 -5.328 -9.492 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.179 4.179 3 Si 0.767 3.233 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.192 1.192 7 C -0.573 4.573 8 H 0.066 0.934 9 C -0.045 4.045 10 C 0.013 3.987 11 N -0.159 5.159 12 N -0.064 5.064 13 C -0.077 4.077 14 C -0.051 4.051 15 C -0.116 4.116 16 C -0.137 4.137 17 C -0.129 4.129 18 C -0.149 4.149 19 C -0.130 4.130 20 C -0.061 4.061 21 C -0.222 4.222 22 C 0.252 3.748 23 O -0.463 6.463 24 H 0.080 0.920 25 H 0.024 0.976 26 H 0.041 0.959 27 H 0.121 0.879 28 H 0.105 0.895 29 H 0.177 0.823 30 H 0.177 0.823 31 H 0.167 0.833 32 H 0.154 0.846 33 H 0.130 0.870 34 H 0.224 0.776 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 25.867 -5.227 -9.327 27.990 hybrid contribution -0.366 0.695 0.832 1.145 sum 25.501 -4.532 -8.494 27.258 Atomic orbital electron populations 1.70010 1.07825 1.28461 1.51406 1.25793 0.95583 1.02887 0.93685 0.85773 0.78940 0.79140 0.79492 1.18309 1.19847 1.19210 1.21095 0.90234 0.94131 1.51827 0.93408 1.19644 0.95573 0.93026 0.96274 1.21886 0.72664 0.99932 1.04202 1.46918 1.09837 1.56400 1.02735 1.70979 1.12579 1.10663 1.12133 1.20829 0.87424 1.03453 0.96027 1.18220 0.93933 1.04672 0.88323 1.21497 0.91584 0.98282 1.00198 1.21476 1.01628 0.99238 0.91392 1.21661 0.93389 0.97598 1.00225 1.21357 0.95943 1.00399 0.97222 1.21386 1.00265 0.98587 0.92718 1.22751 1.04224 0.89921 0.89242 1.22887 0.90517 1.06283 1.02522 1.18961 0.91899 0.80220 0.83757 1.90957 1.70629 1.53769 1.30974 0.91984 0.97578 0.95908 0.87864 0.89474 0.82274 0.82317 0.83347 0.84643 0.86965 0.77586 0.79122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.46 13.96 21.45 0.30 -59.16 16 2 C 0.02 1.16 5.47 84.66 0.46 1.63 16 3 Si 0.94 46.59 27.47 68.60 1.88 48.47 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -13.13 6.54 99.48 0.65 -12.47 16 7 C -0.53 -32.12 9.66 25.60 0.25 -31.87 16 8 H 0.05 3.06 7.99 -2.91 -0.02 3.04 16 9 C -0.01 -0.36 4.36 29.85 0.13 -0.23 16 10 C 0.13 5.93 5.49 86.38 0.47 6.41 16 11 N -0.34 -13.40 3.22 -472.40 -1.52 -14.92 16 12 N -0.24 -8.19 9.98 -48.01 -0.48 -8.67 16 13 C 0.09 2.30 6.82 42.72 0.29 2.59 16 14 C -0.05 -1.03 5.88 -20.04 -0.12 -1.15 16 15 C -0.10 -1.23 9.43 22.49 0.21 -1.02 16 16 C -0.12 -1.25 10.03 22.24 0.22 -1.02 16 17 C -0.11 -1.36 10.04 22.31 0.22 -1.13 16 18 C -0.13 -2.26 10.03 22.24 0.22 -2.03 16 19 C -0.11 -2.50 9.58 22.49 0.22 -2.28 16 20 C -0.04 -0.73 9.50 22.62 0.21 -0.52 16 21 C -0.19 -4.90 10.12 22.57 0.23 -4.67 16 22 C 0.45 17.34 7.47 85.01 0.63 17.97 16 23 O -0.58 -27.28 16.62 -5.44 -0.09 -27.37 16 24 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 25 H 0.01 0.33 7.20 -2.38 -0.02 0.31 16 26 H 0.02 1.15 7.57 -2.39 -0.02 1.13 16 27 H 0.10 4.31 8.14 -2.38 -0.02 4.29 16 28 H 0.09 4.09 7.36 -2.39 -0.02 4.07 16 29 H 0.16 0.89 6.22 -2.91 -0.02 0.87 16 30 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 31 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 32 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 33 H 0.11 2.99 7.55 -2.91 -0.02 2.97 16 34 H 0.21 1.43 6.29 -2.91 -0.02 1.41 16 35 H 0.19 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -79.51 304.73 4.80 -74.70 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.05 Total: 4.25 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 3.66 Total: -17.31 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.70 Total: -82.75 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.09 Total: -27.37 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.88 Total: 48.47 kcal Total: -79.51 4.80 -74.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082305129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.845 kcal (2) G-P(sol) polarization free energy of solvation -79.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds