Wall clock time and date at job start Mon Mar 30 2020 01:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99717 * 2 1 4 4 C 1.50697 * 109.47280 * 270.00166 * 3 2 1 5 5 H 1.08001 * 120.00263 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00145 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99876 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00026 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46750 * 89.99900 * 8 6 4 10 10 H 1.48497 * 109.47057 * 209.99547 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00107 * 8 6 4 12 12 C 1.34774 * 120.00092 * 180.02562 * 2 1 3 13 13 O 1.21586 * 120.00040 * 180.02562 * 12 2 1 14 14 N 1.34773 * 119.99885 * 359.97438 * 12 2 1 15 15 C 1.40219 * 119.99809 * 185.08208 * 14 12 2 16 16 C 1.38972 * 120.08317 * 89.39065 * 15 14 12 17 17 F 1.35097 * 120.03906 * 359.69585 * 16 15 14 18 18 C 1.38339 * 119.91446 * 179.97438 * 16 15 14 19 19 C 1.38267 * 120.08427 * 359.97438 * 18 16 15 20 20 C 1.38266 * 120.16856 * 0.02562 * 19 18 16 21 21 C 1.38339 * 120.08693 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.04748 * 180.02562 * 21 20 19 23 23 H 1.09000 * 109.47168 * 270.00145 * 1 2 3 24 24 H 1.09002 * 109.47345 * 29.99894 * 1 2 3 25 25 H 1.09000 * 109.46909 * 149.99978 * 1 2 3 26 26 H 1.09006 * 109.47506 * 30.00322 * 3 2 1 27 27 H 1.09007 * 109.46716 * 149.99990 * 3 2 1 28 28 H 0.96995 * 119.99938 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00268 * 5.08642 * 14 12 2 30 30 H 1.07999 * 119.95996 * 179.97438 * 18 16 15 31 31 H 1.08005 * 119.91853 * 180.02562 * 19 18 16 32 32 H 1.08004 * 119.96001 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6177 -0.6731 8 14 3.4387 3.4165 -3.4339 9 1 2.3090 4.2597 -3.9009 10 1 4.6992 4.1991 -3.4962 11 1 3.5557 2.2193 -4.3045 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0001 14 7 1.4651 -2.3343 -0.0005 15 6 2.1621 -3.5463 0.1065 16 6 2.4277 -4.0890 1.3580 17 9 2.0199 -3.4463 2.4742 18 6 3.1152 -5.2851 1.4595 19 6 3.5375 -5.9409 0.3179 20 6 3.2751 -5.4041 -0.9290 21 6 2.5882 -4.2083 -1.0387 22 9 2.3318 -3.6848 -2.2575 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5139 27 1 3.1499 1.1384 0.5139 28 1 4.0308 4.4436 -0.8503 29 1 0.4979 -2.3360 -0.0746 30 1 3.3223 -5.7073 2.4318 31 1 4.0737 -6.8748 0.4002 32 1 3.6069 -5.9189 -1.8186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085546931.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:10 Heat of formation + Delta-G solvation = -102.049629 kcal Electronic energy + Delta-G solvation = -20571.040888 eV Core-core repulsion = 16974.420911 eV Total energy + Delta-G solvation = -3596.619978 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.07730 -50.05020 -41.41477 -39.60064 -36.76477 -35.96364 -34.65464 -31.35072 -30.90096 -29.44146 -27.43017 -25.33013 -23.91731 -23.58060 -21.32860 -19.65046 -19.11948 -18.72370 -18.35848 -18.28470 -16.95789 -16.86912 -16.70783 -16.41560 -16.33911 -16.07445 -15.60158 -15.27816 -14.90662 -14.47999 -13.98795 -13.78223 -13.55617 -13.21911 -13.09051 -13.00274 -12.85577 -12.79614 -12.54243 -12.23956 -11.76432 -11.32008 -10.67927 -10.64290 -9.99412 -9.80107 -9.48540 -8.23983 -6.38984 -0.16612 -0.06167 1.34759 1.38297 1.48424 1.63545 2.07250 2.32972 2.37811 2.78442 2.99060 3.05948 3.38564 3.78704 3.87587 4.18428 4.21279 4.39539 4.58866 4.75876 4.78158 4.91210 4.96225 5.01816 5.14799 5.15957 5.37843 5.50070 5.69460 5.82066 5.92940 6.03342 6.68865 6.94779 7.27674 7.55758 8.83198 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025272 B = 0.005327 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.675198 B = 5254.730208 C = 5728.956646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.621 5.621 3 C 0.276 3.724 4 C -0.545 4.545 5 H 0.049 0.951 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.969 3.031 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.700 3.300 13 O -0.630 6.630 14 N -0.691 5.691 15 C 0.057 3.943 16 C 0.109 3.891 17 F -0.139 7.139 18 C -0.150 4.150 19 C -0.039 4.039 20 C -0.152 4.152 21 C 0.106 3.894 22 F -0.142 7.142 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.032 0.968 27 H -0.002 1.002 28 H 0.268 0.732 29 H 0.417 0.583 30 H 0.178 0.822 31 H 0.197 0.803 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 -21.522 2.362 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.355 5.355 3 C 0.154 3.846 4 C -0.584 4.584 5 H 0.067 0.933 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.793 3.207 9 H -0.185 1.185 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.402 3.598 13 O -0.510 6.510 14 N -0.349 5.349 15 C -0.038 4.038 16 C 0.088 3.912 17 F -0.118 7.118 18 C -0.169 4.169 19 C -0.057 4.057 20 C -0.171 4.171 21 C 0.085 3.915 22 F -0.121 7.121 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.050 0.950 27 H 0.016 0.984 28 H 0.077 0.923 29 H 0.258 0.742 30 H 0.195 0.805 31 H 0.214 0.786 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.125 -21.216 2.427 21.961 hybrid contribution -0.379 1.270 -0.803 1.549 sum -5.504 -19.946 1.624 20.755 Atomic orbital electron populations 1.21882 0.77880 1.03842 1.02612 1.47337 1.08033 1.04774 1.75374 1.18729 0.90866 0.78804 0.96160 1.21686 1.37181 1.06612 0.92919 0.93279 1.25849 0.94709 0.96282 1.02128 1.70044 1.38809 1.14782 1.33023 0.85394 0.78292 0.78082 0.78885 1.18484 1.20316 1.20218 1.16097 0.84932 0.81063 0.77708 1.90846 1.14045 1.86657 1.59438 1.42225 1.10231 1.01673 1.80739 1.17630 1.05042 0.88795 0.92314 1.18144 0.99000 0.93483 0.80602 1.91486 1.88484 1.81753 1.50039 1.21608 0.99102 0.92913 1.03239 1.21475 0.95124 1.00399 0.88694 1.21606 0.99716 0.93641 1.02106 1.18238 0.99652 0.94724 0.78878 1.91490 1.92191 1.86906 1.41493 0.90994 0.90430 0.89988 0.94977 0.98413 0.92259 0.74153 0.80510 0.78559 0.80832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.60 10.25 127.77 1.31 3.91 16 2 N -0.62 -28.95 2.86 -869.30 -2.48 -31.44 16 3 C 0.28 15.74 5.16 85.63 0.44 16.18 16 4 C -0.55 -32.94 9.39 25.60 0.24 -32.70 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.56 5.46 84.66 0.46 1.02 16 7 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 8 Si 0.97 46.36 29.54 68.60 2.03 48.39 16 9 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 C 0.70 33.50 8.24 179.06 1.48 34.97 16 13 O -0.63 -36.78 15.90 -3.99 -0.06 -36.85 16 14 N -0.69 -25.00 4.81 -316.80 -1.52 -26.52 16 15 C 0.06 1.85 5.30 38.15 0.20 2.05 16 16 C 0.11 3.04 7.31 22.47 0.16 3.21 16 17 F -0.14 -4.36 17.08 44.97 0.77 -3.59 16 18 C -0.15 -2.65 10.02 22.30 0.22 -2.42 16 19 C -0.04 -0.52 10.04 22.28 0.22 -0.29 16 20 C -0.15 -2.84 10.02 22.30 0.22 -2.61 16 21 C 0.11 3.12 7.31 22.47 0.16 3.28 16 22 F -0.14 -4.88 17.08 44.97 0.77 -4.11 16 23 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 25 H 0.08 2.10 6.29 -2.39 -0.02 2.08 16 26 H 0.03 1.82 8.07 -2.38 -0.02 1.80 16 27 H 0.00 -0.15 7.42 -2.38 -0.02 -0.17 16 28 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.42 11.94 6.52 -92.71 -0.60 11.34 16 30 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.20 0.61 8.06 -2.91 -0.02 0.59 16 32 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -83.84 295.17 5.47 -78.37 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.56 Total: 6.25 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 5.13 Total: 26.60 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -3.72 Total: -115.07 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.06 Total: -36.85 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 1.54 Total: -7.70 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -83.84 5.47 -78.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085546931.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.678 kcal (2) G-P(sol) polarization free energy of solvation -83.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds