Wall clock time and date at job start Mon Mar 30 2020 01:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00080 * 2 1 4 4 H 1.48501 * 109.47576 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47412 * 120.00124 * 3 2 1 6 6 H 1.48507 * 109.47122 * 240.00016 * 3 2 1 7 7 C 1.37871 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99642 * 190.59859 * 7 2 1 9 9 C 1.50704 * 120.00314 * 10.60903 * 7 2 1 10 10 C 1.52997 * 115.54947 * 39.59907 * 9 7 2 11 11 N 1.46496 * 109.47242 * 57.61888 * 10 9 7 12 12 N 1.39508 * 119.12536 * 268.31085 * 11 10 9 13 13 C 1.29979 * 122.69363 * 179.67715 * 12 11 10 14 14 C 1.46299 * 120.01305 * 0.58989 * 13 12 11 15 15 C 1.39613 * 121.85387 * 179.64418 * 14 13 12 16 16 C 1.36690 * 119.67142 * 179.97438 * 15 14 13 17 17 C 1.38903 * 120.91083 * 0.04458 * 16 15 14 18 18 C 1.37769 * 120.70041 * 359.97438 * 17 16 15 19 19 C 1.39424 * 119.39066 * 359.97438 * 18 17 16 20 20 C 1.34943 * 119.12493 * 88.57623 * 11 10 9 21 21 O 1.21808 * 120.62909 * 0.02771 * 20 11 10 22 22 C 1.53005 * 117.49247 * 253.89180 * 9 7 2 23 23 C 1.53001 * 60.00027 * 252.50943 * 22 9 7 24 24 H 0.97001 * 119.99684 * 354.81664 * 1 2 3 25 25 H 1.09004 * 109.46732 * 177.61645 * 10 9 7 26 26 H 1.08996 * 109.47288 * 297.61652 * 10 9 7 27 27 H 1.07997 * 119.99172 * 180.31562 * 13 12 11 28 28 H 1.07998 * 120.16447 * 0.02562 * 15 14 13 29 29 H 1.07997 * 119.54714 * 180.02562 * 16 15 14 30 30 H 1.07995 * 119.65071 * 179.97438 * 17 16 15 31 31 H 1.07998 * 120.30128 * 179.97438 * 18 17 16 32 32 H 1.08994 * 117.50095 * 359.97438 * 22 9 7 33 33 H 1.09003 * 117.49324 * 145.02171 * 22 9 7 34 34 H 1.09003 * 117.50159 * 252.51750 * 23 22 9 35 35 H 1.09000 * 117.49721 * 107.49215 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1030 1.6964 1.2124 6 1 3.1030 1.6963 -1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0707 -1.2020 0.1726 9 6 1.2702 -2.4881 -0.2392 10 6 0.1758 -2.4378 -1.3071 11 7 0.7547 -1.9987 -2.5792 12 7 0.7572 -0.6388 -2.8906 13 6 1.2577 -0.1726 -3.9959 14 6 1.8381 -1.0871 -4.9794 15 6 2.3793 -0.6289 -6.1820 16 6 2.9107 -1.5230 -7.0690 17 6 2.9195 -2.8840 -6.7915 18 6 2.3922 -3.3650 -5.6131 19 6 1.8457 -2.4714 -4.6929 20 6 1.2663 -2.9209 -3.4211 21 8 1.2485 -4.1038 -3.1309 22 6 1.0415 -3.4040 0.9650 23 6 2.0665 -3.7876 -0.1042 24 1 -0.4850 0.8366 0.0759 25 1 -0.2588 -3.4300 -1.4289 26 1 -0.5999 -1.7366 -0.9997 27 1 1.2410 0.8896 -4.1902 28 1 2.3789 0.4267 -6.4101 29 1 3.3293 -1.1663 -7.9985 30 1 3.3443 -3.5724 -7.5070 31 1 2.4021 -4.4245 -5.4041 32 1 1.4224 -3.0707 1.9303 33 1 0.1110 -3.9708 0.9965 34 1 1.8104 -4.6069 -0.7761 35 1 3.1214 -3.7066 0.1579 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:10 Heat of formation + Delta-G solvation = 66.621189 kcal Electronic energy + Delta-G solvation = -20690.000294 eV Core-core repulsion = 17654.923962 eV Total energy + Delta-G solvation = -3035.076332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.39337 -38.16896 -36.54339 -36.06497 -32.30917 -32.02126 -31.18620 -30.05814 -26.55798 -25.37920 -23.86343 -23.15391 -21.65515 -21.05385 -19.28667 -18.07771 -17.97986 -16.62938 -15.93783 -15.09470 -15.01121 -14.77228 -14.58281 -14.33657 -13.71269 -13.45267 -13.06039 -13.02197 -12.50041 -12.05746 -11.93968 -11.51999 -11.34145 -11.26327 -10.93847 -10.70353 -10.47055 -10.24199 -10.10338 -9.79933 -9.10959 -9.06111 -9.01994 -8.88718 -8.64722 -8.01480 -7.63864 -6.00059 -4.01377 0.84923 1.09571 2.58912 2.97359 3.20728 3.30095 3.34350 3.38216 4.22482 4.41151 4.47314 4.75052 4.79767 4.90143 5.09924 5.24539 5.37429 5.60165 5.68098 5.83553 5.96604 6.03730 6.16517 6.30725 6.40191 6.45212 6.56161 6.59591 6.72258 6.83144 6.84835 6.94979 7.06930 7.25669 7.42579 7.45936 7.95470 8.39809 8.49245 8.78359 8.91605 9.58886 11.04593 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.008211 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.103147 B = 3409.377134 C = 4407.542472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.093 3.907 3 Si 0.887 3.113 4 H -0.285 1.285 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.496 4.496 8 H 0.053 0.947 9 C 0.037 3.963 10 C 0.159 3.841 11 N -0.383 5.383 12 N -0.156 5.156 13 C 0.047 3.953 14 C -0.048 4.048 15 C -0.107 4.107 16 C -0.098 4.098 17 C -0.130 4.130 18 C -0.056 4.056 19 C -0.128 4.128 20 C 0.518 3.482 21 O -0.534 6.534 22 C -0.191 4.191 23 C -0.207 4.207 24 H 0.263 0.737 25 H 0.058 0.942 26 H 0.134 0.866 27 H 0.183 0.817 28 H 0.134 0.866 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.197 0.030 -12.960 13.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.112 4.112 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.035 3.965 10 C 0.039 3.961 11 N -0.199 5.199 12 N 0.036 4.964 13 C -0.158 4.158 14 C -0.052 4.052 15 C -0.128 4.128 16 C -0.117 4.117 17 C -0.150 4.150 18 C -0.075 4.075 19 C -0.134 4.134 20 C 0.309 3.691 21 O -0.412 6.412 22 C -0.230 4.230 23 C -0.245 4.245 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.151 0.849 27 H 0.200 0.800 28 H 0.152 0.848 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.154 0.846 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.508 -0.327 -11.920 12.019 hybrid contribution 1.128 0.609 -0.583 1.408 sum 2.635 0.281 -12.503 12.781 Atomic orbital electron populations 1.69663 1.05865 1.26875 1.48007 1.24713 0.94602 0.98357 0.93540 0.86747 0.79762 0.83462 0.78523 1.21029 1.20717 1.20194 1.20322 0.93634 0.89124 1.50262 0.92848 1.19224 0.95010 0.89565 0.92666 1.21576 0.97531 0.98863 0.78094 1.49161 1.51541 1.00517 1.18677 1.74839 1.10508 0.96241 1.14801 1.24928 1.00620 0.99992 0.90220 1.19911 0.97272 0.92608 0.95448 1.20885 0.98662 1.00224 0.92993 1.20982 0.98119 0.93310 0.99247 1.21175 1.00843 0.95745 0.97201 1.21084 0.94330 0.99962 0.92158 1.20253 1.03397 0.93558 0.96198 1.18593 0.79545 0.86498 0.84486 1.90794 1.57976 1.15715 1.76693 1.22895 0.98563 1.06403 0.95150 1.22964 0.96131 1.01665 1.03708 0.92683 0.92372 0.84854 0.80030 0.84830 0.85615 0.85484 0.84555 0.90262 0.91651 0.90278 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.02 10.77 55.43 0.60 -22.42 16 2 C 0.09 2.45 4.09 -17.82 -0.07 2.37 16 3 Si 0.89 20.86 29.55 -169.99 -5.02 15.83 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.50 -13.64 8.63 -34.44 -0.30 -13.93 16 8 H 0.05 1.52 7.84 -52.48 -0.41 1.11 16 9 C 0.04 0.94 1.99 -155.66 -0.31 0.63 16 10 C 0.16 3.88 4.90 -4.05 -0.02 3.86 16 11 N -0.38 -8.86 3.28 -61.51 -0.20 -9.06 16 12 N -0.16 -3.39 9.90 31.91 0.32 -3.07 16 13 C 0.05 0.81 11.37 -15.10 -0.17 0.64 16 14 C -0.05 -0.78 5.89 -104.96 -0.62 -1.40 16 15 C -0.11 -1.29 9.81 -39.63 -0.39 -1.68 16 16 C -0.10 -1.05 9.96 -39.89 -0.40 -1.45 16 17 C -0.13 -1.52 10.01 -39.51 -0.40 -1.92 16 18 C -0.06 -0.86 9.67 -39.31 -0.38 -1.24 16 19 C -0.13 -2.34 5.90 -104.80 -0.62 -2.96 16 20 C 0.52 11.47 7.69 -12.72 -0.10 11.37 16 21 O -0.53 -12.67 15.01 5.09 0.08 -12.60 16 22 C -0.19 -4.52 9.95 -26.73 -0.27 -4.79 16 23 C -0.21 -4.97 9.78 -26.73 -0.26 -5.24 16 24 H 0.26 6.72 8.32 -40.82 -0.34 6.39 16 25 H 0.06 1.38 7.39 -51.93 -0.38 0.99 16 26 H 0.13 3.43 5.92 -51.93 -0.31 3.13 16 27 H 0.18 2.42 8.06 -52.49 -0.42 1.99 16 28 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 31 H 0.14 2.01 7.81 -52.49 -0.41 1.60 16 32 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 33 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.08 1.89 7.13 -51.93 -0.37 1.52 16 35 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -30.63 300.54 -7.98 -38.61 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -3.98 Total: 3.90 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -4.29 Total: -15.72 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.71 Total: -34.55 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.63 -7.98 -38.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.231 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds