Wall clock time and date at job start Mon Mar 30 2020 01:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00080 * 2 1 4 4 H 1.48501 * 109.47576 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47412 * 120.00124 * 3 2 1 6 6 H 1.48507 * 109.47122 * 240.00016 * 3 2 1 7 7 C 1.37871 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99642 * 190.59859 * 7 2 1 9 9 C 1.50704 * 120.00314 * 10.60903 * 7 2 1 10 10 C 1.52997 * 115.54947 * 39.59907 * 9 7 2 11 11 N 1.46496 * 109.47242 * 57.61888 * 10 9 7 12 12 N 1.39508 * 119.12536 * 268.31085 * 11 10 9 13 13 C 1.29979 * 122.69363 * 179.67715 * 12 11 10 14 14 C 1.46299 * 120.01305 * 0.58989 * 13 12 11 15 15 C 1.39613 * 121.85387 * 179.64418 * 14 13 12 16 16 C 1.36690 * 119.67142 * 179.97438 * 15 14 13 17 17 C 1.38903 * 120.91083 * 0.04458 * 16 15 14 18 18 C 1.37769 * 120.70041 * 359.97438 * 17 16 15 19 19 C 1.39424 * 119.39066 * 359.97438 * 18 17 16 20 20 C 1.34943 * 119.12493 * 88.57623 * 11 10 9 21 21 O 1.21808 * 120.62909 * 0.02771 * 20 11 10 22 22 C 1.53005 * 117.49247 * 253.89180 * 9 7 2 23 23 C 1.53001 * 60.00027 * 252.50943 * 22 9 7 24 24 H 0.97001 * 119.99684 * 354.81664 * 1 2 3 25 25 H 1.09004 * 109.46732 * 177.61645 * 10 9 7 26 26 H 1.08996 * 109.47288 * 297.61652 * 10 9 7 27 27 H 1.07997 * 119.99172 * 180.31562 * 13 12 11 28 28 H 1.07998 * 120.16447 * 0.02562 * 15 14 13 29 29 H 1.07997 * 119.54714 * 180.02562 * 16 15 14 30 30 H 1.07995 * 119.65071 * 179.97438 * 17 16 15 31 31 H 1.07998 * 120.30128 * 179.97438 * 18 17 16 32 32 H 1.08994 * 117.50095 * 359.97438 * 22 9 7 33 33 H 1.09003 * 117.49324 * 145.02171 * 22 9 7 34 34 H 1.09003 * 117.50159 * 252.51750 * 23 22 9 35 35 H 1.09000 * 117.49721 * 107.49215 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1030 1.6964 1.2124 6 1 3.1030 1.6963 -1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0707 -1.2020 0.1726 9 6 1.2702 -2.4881 -0.2392 10 6 0.1758 -2.4378 -1.3071 11 7 0.7547 -1.9987 -2.5792 12 7 0.7572 -0.6388 -2.8906 13 6 1.2577 -0.1726 -3.9959 14 6 1.8381 -1.0871 -4.9794 15 6 2.3793 -0.6289 -6.1820 16 6 2.9107 -1.5230 -7.0690 17 6 2.9195 -2.8840 -6.7915 18 6 2.3922 -3.3650 -5.6131 19 6 1.8457 -2.4714 -4.6929 20 6 1.2663 -2.9209 -3.4211 21 8 1.2485 -4.1038 -3.1309 22 6 1.0415 -3.4040 0.9650 23 6 2.0665 -3.7876 -0.1042 24 1 -0.4850 0.8366 0.0759 25 1 -0.2588 -3.4300 -1.4289 26 1 -0.5999 -1.7366 -0.9997 27 1 1.2410 0.8896 -4.1902 28 1 2.3789 0.4267 -6.4101 29 1 3.3293 -1.1663 -7.9985 30 1 3.3443 -3.5724 -7.5070 31 1 2.4021 -4.4245 -5.4041 32 1 1.4224 -3.0707 1.9303 33 1 0.1110 -3.9708 0.9965 34 1 1.8104 -4.6069 -0.7761 35 1 3.1214 -3.7066 0.1579 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:09 Heat of formation + Delta-G solvation = 48.834653 kcal Electronic energy + Delta-G solvation = -20690.771577 eV Core-core repulsion = 17654.923962 eV Total energy + Delta-G solvation = -3035.847615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.79257 -39.51239 -38.29811 -37.63218 -34.11747 -33.71720 -32.30231 -31.33298 -28.27273 -27.36990 -25.12630 -24.51367 -23.01239 -22.84843 -21.15681 -19.45530 -19.34795 -18.33675 -17.56326 -16.65353 -16.57962 -16.34409 -16.07030 -15.64586 -15.21170 -14.82560 -14.81550 -14.35674 -13.85880 -13.79390 -13.27640 -13.09465 -12.98644 -12.81888 -12.56754 -12.43583 -12.30258 -12.06447 -11.74267 -11.60927 -11.05365 -10.68527 -10.55785 -10.28362 -10.06228 -9.98027 -9.15606 -8.00553 -6.09786 -0.33569 0.00094 1.24853 1.39396 1.43813 1.48290 1.52052 1.95252 2.47247 2.97000 3.10406 3.13463 3.57275 3.62852 3.74535 4.00305 4.22571 4.28737 4.33886 4.42544 4.52736 4.61889 4.66648 4.72247 4.88616 4.98722 5.04194 5.05956 5.18019 5.30874 5.38429 5.42669 5.44472 5.53917 5.55898 5.88430 5.90134 6.41623 6.81421 6.86024 7.29194 7.52900 9.02854 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.008211 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.103147 B = 3409.377134 C = 4407.542472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.069 3.931 3 Si 0.937 3.063 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.524 4.524 8 H 0.032 0.968 9 C 0.018 3.982 10 C 0.172 3.828 11 N -0.398 5.398 12 N -0.218 5.218 13 C 0.074 3.926 14 C -0.074 4.074 15 C -0.090 4.090 16 C -0.084 4.084 17 C -0.110 4.110 18 C -0.079 4.079 19 C -0.159 4.159 20 C 0.502 3.498 21 O -0.574 6.574 22 C -0.184 4.184 23 C -0.200 4.200 24 H 0.265 0.735 25 H 0.049 0.951 26 H 0.116 0.884 27 H 0.225 0.775 28 H 0.176 0.824 29 H 0.177 0.823 30 H 0.165 0.835 31 H 0.126 0.874 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.578 2.184 -16.397 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.136 4.136 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.560 4.560 8 H 0.050 0.950 9 C 0.017 3.983 10 C 0.051 3.949 11 N -0.213 5.213 12 N -0.025 5.025 13 C -0.131 4.131 14 C -0.078 4.078 15 C -0.110 4.110 16 C -0.101 4.101 17 C -0.128 4.128 18 C -0.098 4.098 19 C -0.165 4.165 20 C 0.295 3.705 21 O -0.455 6.455 22 C -0.223 4.223 23 C -0.237 4.237 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.133 0.867 27 H 0.241 0.759 28 H 0.194 0.806 29 H 0.194 0.806 30 H 0.183 0.817 31 H 0.144 0.856 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.880 1.839 -15.361 15.736 hybrid contribution 0.779 -0.019 0.243 0.816 sum 3.659 1.820 -15.117 15.660 Atomic orbital electron populations 1.69760 1.06648 1.27491 1.47373 1.25171 0.95226 1.00456 0.92703 0.85974 0.78908 0.80494 0.78337 1.19698 1.21271 1.19493 1.20332 0.92777 0.90706 1.52234 0.94985 1.19348 0.95798 0.89425 0.93751 1.21165 0.96767 0.97821 0.79165 1.48980 1.52367 1.01668 1.18264 1.74802 1.14622 0.95256 1.17801 1.25807 0.96592 1.01923 0.88763 1.20051 0.99259 0.91279 0.97239 1.21399 0.96103 1.02712 0.90774 1.21596 0.95890 0.92299 1.00364 1.21669 0.98092 0.97381 0.95697 1.21204 0.95742 0.99377 0.93467 1.20275 1.05423 0.95557 0.95253 1.19311 0.79308 0.86061 0.85854 1.90730 1.59886 1.16998 1.77890 1.22910 0.98953 1.05833 0.94575 1.22831 0.95898 1.01150 1.03825 0.92522 0.93242 0.86679 0.75928 0.80646 0.80610 0.81736 0.85577 0.90451 0.90133 0.90636 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.31 10.77 21.45 0.23 -47.08 16 2 C 0.07 3.67 4.09 84.65 0.35 4.02 16 3 Si 0.94 42.53 29.55 68.60 2.03 44.56 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.52 -29.76 8.63 25.60 0.22 -29.54 16 8 H 0.03 1.89 7.84 -2.91 -0.02 1.87 16 9 C 0.02 0.96 1.99 -52.92 -0.11 0.86 16 10 C 0.17 8.88 4.90 86.38 0.42 9.30 16 11 N -0.40 -19.29 3.28 -466.60 -1.53 -20.83 16 12 N -0.22 -9.60 9.90 -52.95 -0.52 -10.12 16 13 C 0.07 2.43 11.37 87.06 0.99 3.42 16 14 C -0.07 -2.23 5.89 -20.08 -0.12 -2.35 16 15 C -0.09 -1.67 9.81 22.24 0.22 -1.46 16 16 C -0.08 -1.25 9.96 22.07 0.22 -1.03 16 17 C -0.11 -2.07 10.01 22.32 0.22 -1.84 16 18 C -0.08 -2.31 9.67 22.44 0.22 -2.10 16 19 C -0.16 -5.84 5.90 -19.98 -0.12 -5.96 16 20 C 0.50 23.40 7.69 86.46 0.66 24.06 16 21 O -0.57 -29.17 15.01 -4.69 -0.07 -29.24 16 22 C -0.18 -9.02 9.95 30.60 0.30 -8.71 16 23 C -0.20 -10.06 9.78 30.60 0.30 -9.76 16 24 H 0.26 13.62 8.32 -92.71 -0.77 12.85 16 25 H 0.05 2.53 7.39 -2.38 -0.02 2.51 16 26 H 0.12 6.27 5.92 -2.39 -0.01 6.26 16 27 H 0.22 5.07 8.06 -2.91 -0.02 5.05 16 28 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 30 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.13 3.83 7.81 -2.91 -0.02 3.81 16 32 H 0.08 3.76 8.14 -2.39 -0.02 3.74 16 33 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 34 H 0.08 3.82 7.13 -2.39 -0.02 3.81 16 35 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -71.99 300.54 5.02 -66.97 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 1.10 Total: 16.82 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 3.79 Total: -21.08 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -1.82 Total: -78.03 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.07 Total: -29.24 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -71.99 5.02 -66.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.806 kcal (2) G-P(sol) polarization free energy of solvation -71.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds