Wall clock time and date at job start Mon Mar 30 2020 01:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99905 * 2 1 4 4 H 1.48497 * 109.47395 * 89.99678 * 3 2 1 5 5 H 1.48500 * 109.47268 * 209.99731 * 3 2 1 6 6 H 1.48503 * 109.47081 * 329.99639 * 3 2 1 7 7 C 1.37874 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99879 * 189.32561 * 7 2 1 9 9 C 1.50701 * 120.00439 * 9.32003 * 7 2 1 10 10 C 1.53004 * 115.54477 * 39.61824 * 9 7 2 11 11 N 1.46499 * 109.46998 * 174.49127 * 10 9 7 12 12 C 1.35853 * 119.69940 * 88.80548 * 11 10 9 13 13 N 1.29839 * 123.36910 * 180.02562 * 12 11 10 14 14 C 1.35652 * 121.61315 * 359.97438 * 13 12 11 15 15 C 1.39641 * 121.64403 * 180.02562 * 14 13 12 16 16 C 1.37670 * 119.68409 * 179.97438 * 15 14 13 17 17 C 1.38886 * 120.82128 * 0.02562 * 16 15 14 18 18 C 1.37762 * 120.56960 * 359.95325 * 17 16 15 19 19 C 1.39336 * 119.51383 * 0.04642 * 18 17 16 20 20 C 1.35347 * 119.69437 * 268.53640 * 11 10 9 21 21 O 1.21722 * 121.30163 * 359.97438 * 20 11 10 22 22 C 1.52999 * 117.50132 * 253.91390 * 9 7 2 23 23 C 1.52995 * 117.50386 * 185.28794 * 9 7 2 24 24 H 0.96998 * 120.00203 * 354.98799 * 1 2 3 25 25 H 1.09003 * 109.47262 * 294.49075 * 10 9 7 26 26 H 1.08998 * 109.47059 * 54.49239 * 10 9 7 27 27 H 1.08006 * 118.31705 * 0.02562 * 12 11 10 28 28 H 1.07997 * 120.15840 * 359.96348 * 15 14 13 29 29 H 1.08000 * 119.58748 * 180.02562 * 16 15 14 30 30 H 1.07999 * 119.71274 * 179.97438 * 17 16 15 31 31 H 1.08004 * 120.24281 * 180.02562 * 18 17 16 32 32 H 1.08998 * 117.49616 * 359.97438 * 22 9 7 33 33 H 1.08994 * 117.49957 * 145.01494 * 22 9 7 34 34 H 1.08997 * 117.50214 * 214.98233 * 23 9 7 35 35 H 1.09000 * 117.49740 * 0.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 1.4000 5 1 3.5467 1.4402 -0.7000 6 1 1.4465 2.6526 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0738 -1.2001 0.1521 9 6 1.2660 -2.4907 -0.2102 10 6 0.1513 -2.4524 -1.2576 11 7 -0.3854 -3.8020 -1.4491 12 6 -1.4094 -4.2361 -0.6690 13 7 -1.9385 -5.4169 -0.7769 14 6 -1.4960 -6.3133 -1.6939 15 6 -2.0649 -7.5831 -1.8109 16 6 -1.5844 -8.4610 -2.7564 17 6 -0.5392 -8.0999 -3.5966 18 6 0.0381 -6.8528 -3.5007 19 6 -0.4334 -5.9494 -2.5504 20 6 0.1399 -4.6030 -2.4053 21 8 1.0538 -4.2250 -3.1149 22 6 1.0604 -3.3928 1.0083 23 6 2.0648 -3.7886 -0.0759 24 1 -0.4850 0.8368 0.0734 25 1 -0.6446 -1.7898 -0.9171 26 1 0.5522 -2.0835 -2.2016 27 1 -1.8036 -3.5646 0.0795 28 1 -2.8778 -7.8753 -1.1627 29 1 -2.0259 -9.4426 -2.8458 30 1 -0.1760 -8.8028 -4.3317 31 1 0.8504 -6.5774 -4.1570 32 1 1.4597 -3.0486 1.9623 33 1 0.1308 -3.9591 1.0641 34 1 1.7960 -4.6154 -0.7333 35 1 3.1244 -3.7047 0.1654 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259615.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:22 Heat of formation + Delta-G solvation = 44.331742 kcal Electronic energy + Delta-G solvation = -20412.103832 eV Core-core repulsion = 17376.060956 eV Total energy + Delta-G solvation = -3036.042875 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30159 -38.49353 -37.17233 -36.27404 -33.31991 -32.30661 -31.14824 -29.78116 -27.08702 -25.62161 -24.49547 -23.33563 -21.77203 -21.14576 -19.45366 -18.58188 -18.28243 -16.81878 -16.41054 -15.53884 -15.23290 -14.85536 -14.73606 -14.36228 -13.81102 -13.71683 -13.55474 -13.00064 -12.63656 -12.33246 -11.97809 -11.80328 -11.68541 -11.56336 -11.07938 -10.91460 -10.60249 -10.34765 -10.17258 -9.76791 -9.70999 -9.30963 -9.17332 -9.01262 -8.87553 -8.23969 -7.72417 -6.29066 -4.29378 0.79702 0.99343 2.48776 3.01616 3.09660 3.19167 3.26662 3.31671 4.23061 4.23631 4.34121 4.55178 4.81817 4.88774 4.96310 5.20323 5.30871 5.40275 5.47365 5.67392 5.90108 6.00325 6.06569 6.20797 6.26342 6.32464 6.43776 6.53360 6.57885 6.65807 6.69771 6.86835 6.94771 7.16870 7.26960 7.32800 7.71716 8.10149 8.21567 8.25801 8.67796 9.31628 10.76975 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.036951 B = 0.005181 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.572048 B = 5403.520973 C = 5615.265327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.483 4.483 8 H 0.066 0.934 9 C 0.045 3.955 10 C 0.124 3.876 11 N -0.534 5.534 12 C 0.397 3.603 13 N -0.552 5.552 14 C 0.165 3.835 15 C -0.122 4.122 16 C -0.079 4.079 17 C -0.155 4.155 18 C -0.040 4.040 19 C -0.204 4.204 20 C 0.541 3.459 21 O -0.507 6.507 22 C -0.202 4.202 23 C -0.204 4.204 24 H 0.267 0.733 25 H 0.136 0.864 26 H 0.086 0.914 27 H 0.200 0.800 28 H 0.135 0.865 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 -11.157 -3.249 12.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.133 4.133 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.209 1.209 7 C -0.521 4.521 8 H 0.084 0.916 9 C 0.044 3.956 10 C 0.005 3.995 11 N -0.253 5.253 12 C 0.111 3.889 13 N -0.275 5.275 14 C 0.054 3.946 15 C -0.141 4.141 16 C -0.098 4.098 17 C -0.173 4.173 18 C -0.059 4.059 19 C -0.211 4.211 20 C 0.333 3.667 21 O -0.382 6.382 22 C -0.240 4.240 23 C -0.241 4.241 24 H 0.077 0.923 25 H 0.154 0.846 26 H 0.104 0.896 27 H 0.217 0.783 28 H 0.152 0.848 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.372 -11.119 -3.384 12.804 hybrid contribution 1.111 0.977 -0.272 1.504 sum -4.261 -10.142 -3.657 11.593 Atomic orbital electron populations 1.69647 1.06048 1.27522 1.49624 1.24989 0.95003 0.99469 0.93850 0.86404 0.79978 0.82365 0.78331 1.20466 1.19600 1.20852 1.20496 0.93923 0.88408 1.49226 0.91557 1.19245 0.94116 0.90002 0.92265 1.22177 0.99991 0.76697 1.00651 1.47156 1.29896 1.18516 1.29727 1.24858 0.82433 0.91987 0.89606 1.68759 1.31940 1.02194 1.24629 1.18903 0.91350 0.93908 0.90430 1.20784 1.01456 0.91744 1.00126 1.21192 0.95477 0.99072 0.94089 1.21064 0.98343 0.96615 1.01295 1.20995 0.97606 0.92222 0.95087 1.20751 1.01674 0.95856 1.02774 1.18393 0.82924 0.85018 0.80329 1.90846 1.27731 1.75455 1.44146 1.23065 0.98630 1.06780 0.95561 1.22858 0.96916 1.00851 1.03487 0.92256 0.84631 0.89555 0.78313 0.84751 0.85443 0.85529 0.84884 0.89934 0.91933 0.91971 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.33 10.92 55.43 0.61 -21.73 16 2 C 0.07 1.75 5.27 -17.82 -0.09 1.65 16 3 Si 0.90 19.89 29.55 -169.99 -5.02 14.87 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.48 -12.51 9.02 -34.44 -0.31 -12.82 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 C 0.04 1.06 2.31 -155.66 -0.36 0.70 16 10 C 0.12 2.74 4.88 -4.04 -0.02 2.72 16 11 N -0.53 -10.42 1.90 -118.85 -0.23 -10.65 16 12 C 0.40 6.78 9.21 -90.18 -0.83 5.95 16 13 N -0.55 -9.30 10.37 -12.01 -0.12 -9.43 16 14 C 0.16 2.73 6.63 -84.51 -0.56 2.17 16 15 C -0.12 -1.62 10.03 -39.27 -0.39 -2.02 16 16 C -0.08 -0.88 10.00 -39.55 -0.40 -1.28 16 17 C -0.15 -1.84 10.02 -39.52 -0.40 -2.23 16 18 C -0.04 -0.60 9.68 -39.35 -0.38 -0.98 16 19 C -0.20 -3.62 5.89 -104.77 -0.62 -4.24 16 20 C 0.54 11.04 5.74 -12.43 -0.07 10.97 16 21 O -0.51 -11.67 16.09 5.17 0.08 -11.59 16 22 C -0.20 -4.40 9.60 -26.73 -0.26 -4.65 16 23 C -0.20 -4.60 9.54 -26.73 -0.25 -4.85 16 24 H 0.27 6.41 8.32 -40.82 -0.34 6.07 16 25 H 0.14 3.03 5.93 -51.93 -0.31 2.72 16 26 H 0.09 2.07 7.42 -51.93 -0.39 1.68 16 27 H 0.20 2.93 7.89 -52.48 -0.41 2.51 16 28 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.94 7.83 -52.48 -0.41 1.53 16 32 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 33 H 0.06 1.25 5.79 -51.93 -0.30 0.95 16 34 H 0.06 1.41 5.70 -51.93 -0.30 1.12 16 35 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -28.16 295.12 -8.95 -37.11 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -3.77 Total: 5.87 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -4.94 Total: -8.91 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.26 Total: -41.80 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.16 -8.95 -37.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259615.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.445 kcal (2) G-P(sol) polarization free energy of solvation -28.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds