Wall clock time and date at job start Mon Mar 30 2020 01:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35471 * 117.00181 * 2 1 4 4 C 1.38068 * 119.76101 * 359.97438 * 3 2 1 5 5 C 1.38213 * 121.64652 * 180.02562 * 4 3 2 6 6 C 1.39531 * 120.64845 * 0.02562 * 5 4 3 7 7 C 1.46222 * 120.58882 * 179.97438 * 6 5 4 8 8 O 1.21382 * 120.00059 * 174.33785 * 7 6 5 9 9 C 1.50705 * 119.99972 * 354.33208 * 7 6 5 10 10 C 1.50703 * 109.46990 * 180.02562 * 9 7 6 11 11 H 1.08002 * 120.00153 * 359.97438 * 10 9 7 12 12 C 1.37873 * 119.99600 * 180.02562 * 10 9 7 13 13 N 1.31521 * 119.99566 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00439 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47383 * 89.99604 * 14 12 10 16 16 H 1.48502 * 109.47261 * 209.99994 * 14 12 10 17 17 H 1.48503 * 109.47043 * 329.99890 * 14 12 10 18 18 C 1.46437 * 118.82197 * 0.24834 * 6 5 4 19 19 C 1.39890 * 121.41068 * 180.37276 * 18 6 5 20 20 C 1.36411 * 119.63035 * 179.66753 * 19 18 6 21 21 C 1.39183 * 120.87226 * 359.72988 * 20 19 18 22 22 C 1.36266 * 120.94170 * 359.95872 * 21 20 19 23 23 C 1.40351 * 119.64877 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47315 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46968 * 300.00368 * 1 2 3 26 26 H 1.09002 * 109.46708 * 60.00158 * 1 2 3 27 27 H 1.07996 * 119.17498 * 0.04364 * 4 3 2 28 28 H 1.08003 * 119.67251 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47048 * 60.00325 * 9 7 6 30 30 H 1.09000 * 109.47083 * 300.00253 * 9 7 6 31 31 H 0.97008 * 119.99258 * 180.02562 * 13 12 10 32 32 H 1.07996 * 120.18439 * 359.35284 * 19 18 6 33 33 H 1.07998 * 119.56076 * 179.71701 * 20 19 18 34 34 H 1.08002 * 119.53039 * 179.97438 * 21 20 19 35 35 H 1.08004 * 120.17357 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2070 0.0000 4 6 1.2873 2.3619 -0.0005 5 6 1.8740 3.6133 -0.0011 6 6 3.2628 3.7478 -0.0016 7 6 3.8821 5.0724 -0.0028 8 8 5.0868 5.1793 0.1004 9 6 3.0246 6.3050 -0.1323 10 6 3.9004 7.5311 -0.1069 11 1 4.9709 7.4282 -0.0065 12 6 3.3351 8.7843 -0.2106 13 7 4.0995 9.8543 -0.1890 14 14 1.4835 8.9625 -0.3820 15 1 0.8696 9.0694 0.9659 16 1 1.1743 10.1857 -1.1652 17 1 0.9346 7.7739 -1.0830 18 6 4.0892 2.5389 -0.0072 19 6 5.4862 2.6107 -0.0003 20 6 6.2206 1.4611 0.0011 21 6 5.5983 0.2161 0.0013 22 6 4.2397 0.1119 0.0010 23 6 3.4541 1.2750 -0.0001 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2101 2.2853 -0.0002 28 1 1.2513 4.4957 -0.0011 29 1 2.3186 6.3451 0.6971 30 1 2.4771 6.2694 -1.0741 31 1 3.7016 10.7361 -0.2616 32 1 5.9806 3.5708 -0.0011 33 1 7.2991 1.5178 0.0018 34 1 6.2009 -0.6802 0.0020 35 1 3.7698 -0.8606 0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094692848.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:14 Heat of formation + Delta-G solvation = -25.341388 kcal Electronic energy + Delta-G solvation = -19641.333924 eV Core-core repulsion = 16569.977044 eV Total energy + Delta-G solvation = -3071.356880 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70528 -38.96236 -37.92434 -35.65508 -32.88688 -31.91622 -30.57920 -30.06425 -28.53093 -27.58888 -24.21184 -23.18328 -22.71971 -21.68117 -19.22654 -18.08217 -17.19063 -16.97282 -16.72977 -16.01350 -15.56578 -15.06915 -14.57299 -14.19395 -14.17603 -13.76225 -13.61510 -13.14974 -13.13436 -12.80919 -12.49248 -12.19271 -11.93634 -11.80404 -11.56910 -11.22069 -10.82588 -10.77910 -10.73165 -10.56871 -9.95221 -9.34296 -9.26743 -8.64871 -8.58791 -8.48424 -7.47623 -6.04470 -4.04196 0.39536 1.08507 1.89305 2.78686 2.96913 3.25604 3.31676 3.34294 3.49209 4.25595 4.39997 4.63208 4.65481 4.71597 4.89189 4.89594 5.06734 5.09903 5.18652 5.23422 5.26939 5.46357 5.49880 5.65114 5.77509 6.02275 6.18974 6.28154 6.39781 6.43619 6.47500 6.64162 6.72132 6.83890 6.92321 7.11121 7.20049 7.61740 8.43819 8.61563 9.12104 9.54208 11.08643 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.021261 B = 0.005437 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.645704 B = 5148.887812 C = 6439.902269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.164 3.836 4 C -0.237 4.237 5 C -0.024 4.024 6 C -0.186 4.186 7 C 0.405 3.595 8 O -0.448 6.448 9 C -0.056 4.056 10 C -0.518 4.518 11 H 0.091 0.909 12 C 0.069 3.931 13 N -0.897 5.897 14 Si 0.873 3.127 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.265 1.265 18 C 0.012 3.988 19 C -0.116 4.116 20 C -0.109 4.109 21 C -0.131 4.131 22 C -0.092 4.092 23 C -0.081 4.081 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.131 0.869 28 H 0.139 0.861 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.264 0.736 32 H 0.168 0.832 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 -21.255 0.138 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.118 3.882 4 C -0.256 4.256 5 C -0.042 4.042 6 C -0.187 4.187 7 C 0.284 3.716 8 O -0.324 6.324 9 C -0.093 4.093 10 C -0.556 4.556 11 H 0.109 0.891 12 C -0.132 4.132 13 N -0.536 5.536 14 Si 0.700 3.300 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.190 1.190 18 C 0.012 3.988 19 C -0.133 4.133 20 C -0.127 4.127 21 C -0.149 4.149 22 C -0.110 4.110 23 C -0.081 4.081 24 H 0.119 0.881 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.185 0.815 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.378 -21.196 0.180 22.135 hybrid contribution -1.524 0.293 -0.093 1.555 sum -7.902 -20.902 0.088 22.346 Atomic orbital electron populations 1.23132 0.77969 1.04025 1.01878 1.85924 1.21715 1.27152 1.87521 1.19179 0.91222 0.84278 0.93567 1.20900 1.00047 0.91989 1.12657 1.21283 0.93853 0.97075 0.91982 1.21901 0.93640 0.94688 1.08466 1.22477 0.89638 0.88751 0.70771 1.90249 1.17283 1.88394 1.36500 1.19984 0.97260 0.93488 0.98555 1.21026 0.96190 0.87994 1.50372 0.89127 1.24983 0.97706 0.95795 0.94727 1.69906 1.35200 0.97995 1.50491 0.86908 0.86512 0.78020 0.78606 1.20096 1.21118 1.19015 1.18875 0.93567 0.90394 0.95961 1.22036 0.92651 1.01348 0.97262 1.21075 1.00301 0.92314 0.99005 1.20844 0.94609 0.97792 1.01646 1.20857 0.93752 0.97212 0.99164 1.17379 0.89743 0.93972 1.07035 0.88122 0.92242 0.92229 0.85128 0.84358 0.93496 0.93005 0.92617 0.81531 0.85812 0.86109 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.79 101.05 0.99 1.17 16 2 O -0.31 -3.54 9.66 -18.11 -0.17 -3.72 16 3 C 0.16 2.24 6.70 -38.53 -0.26 1.98 16 4 C -0.24 -3.09 8.95 -39.65 -0.35 -3.45 16 5 C -0.02 -0.36 9.44 -39.11 -0.37 -0.73 16 6 C -0.19 -3.41 6.04 -102.91 -0.62 -4.03 16 7 C 0.40 8.91 7.06 -31.10 -0.22 8.69 16 8 O -0.45 -10.92 12.66 5.47 0.07 -10.85 16 9 C -0.06 -1.31 3.21 -29.03 -0.09 -1.40 16 10 C -0.52 -15.00 9.48 -34.44 -0.33 -15.32 16 11 H 0.09 2.94 7.00 -52.49 -0.37 2.57 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 14 Si 0.87 20.76 27.47 -169.99 -4.67 16.09 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 18 C 0.01 0.21 5.90 -104.76 -0.62 -0.40 16 19 C -0.12 -1.97 9.26 -39.62 -0.37 -2.34 16 20 C -0.11 -1.50 9.96 -39.89 -0.40 -1.90 16 21 C -0.13 -1.61 9.95 -39.94 -0.40 -2.01 16 22 C -0.09 -1.21 9.56 -39.50 -0.38 -1.59 16 23 C -0.08 -1.24 5.75 -106.77 -0.61 -1.85 16 24 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.38 7.63 -51.93 -0.40 -0.01 16 26 H 0.06 0.39 7.63 -51.93 -0.40 -0.01 16 27 H 0.13 1.29 6.14 -52.49 -0.32 0.96 16 28 H 0.14 1.94 6.98 -52.48 -0.37 1.57 16 29 H 0.05 1.03 7.34 -51.93 -0.38 0.65 16 30 H 0.05 1.16 7.20 -51.93 -0.37 0.78 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.17 3.16 5.05 -52.49 -0.26 2.90 16 33 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.13 1.43 7.60 -52.48 -0.40 1.03 16 LS Contribution 296.14 15.07 4.46 4.46 Total: -1.00 -33.34 296.14 -7.36 -40.70 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -3.70 Total: 1.57 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -4.12 Total: -21.28 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.77 Total: -26.98 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.11 Total: -14.57 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.34 -7.36 -40.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094692848.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.362 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds