Wall clock time and date at job start Mon Mar 30 2020 00:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.47094 * 2 1 4 4 C 1.46495 * 120.00106 * 79.55750 * 3 2 1 5 5 C 1.50705 * 109.46738 * 90.00206 * 4 3 2 6 6 H 1.07993 * 120.00288 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99529 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99745 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00481 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46905 * 89.99698 * 9 7 5 11 11 H 1.48498 * 109.47463 * 209.99975 * 9 7 5 12 12 H 1.48500 * 109.47045 * 330.00079 * 9 7 5 13 13 C 1.34783 * 119.99667 * 259.56370 * 3 2 1 14 14 O 1.21529 * 119.99922 * 179.97438 * 13 3 2 15 15 C 1.47994 * 120.00053 * 359.97438 * 13 3 2 16 16 C 1.39991 * 120.92646 * 24.09450 * 15 13 3 17 17 C 1.37930 * 119.09698 * 179.74373 * 16 15 13 18 18 N 1.31943 * 121.01368 * 0.53777 * 17 16 15 19 19 C 1.31858 * 122.05699 * 359.71170 * 18 17 16 20 20 F 1.35101 * 119.61032 * 179.97438 * 19 18 17 21 21 C 1.38887 * 120.78488 * 0.02613 * 19 18 17 22 22 F 1.35095 * 120.55094 * 179.97438 * 21 19 18 23 23 H 1.08997 * 109.47357 * 300.00065 * 1 2 3 24 24 H 1.09002 * 109.47058 * 60.00149 * 1 2 3 25 25 H 1.09001 * 109.46754 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46866 * 239.99446 * 2 1 3 27 27 H 1.08995 * 109.46742 * 119.99666 * 2 1 3 28 28 H 1.09002 * 109.47280 * 210.00133 * 4 3 2 29 29 H 1.08990 * 109.47284 * 330.00340 * 4 3 2 30 30 H 0.96996 * 120.00111 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.45145 * 0.02562 * 16 15 13 32 32 H 1.08000 * 119.50087 * 180.26931 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0458 2.1485 1.2477 5 6 3.3726 1.9458 1.9329 6 1 4.1207 1.3095 1.4838 7 6 3.6317 2.5736 3.1328 8 7 4.7894 2.3963 3.7311 9 14 2.3386 3.6759 3.9087 10 1 1.4714 2.8676 4.8032 11 1 3.0059 4.7425 4.6975 12 1 1.5103 4.2937 2.8422 13 6 2.4424 1.9460 -1.1480 14 8 2.8470 3.0920 -1.1481 15 6 2.4151 1.1707 -2.4083 16 6 1.5374 0.0923 -2.5708 17 6 1.5400 -0.6008 -3.7633 18 7 2.3611 -0.2684 -4.7411 19 6 3.2085 0.7360 -4.6323 20 9 4.0277 1.0330 -5.6648 21 6 3.2697 1.4916 -3.4686 22 9 4.1401 2.5193 -3.3621 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.9091 3.2070 1.0264 29 1 1.2433 1.8074 1.9016 30 1 4.9719 2.8383 4.5751 31 1 0.8642 -0.1902 -1.7749 32 1 0.8625 -1.4311 -3.8972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097865739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:46 Heat of formation + Delta-G solvation = -68.177186 kcal Electronic energy + Delta-G solvation = -20761.375637 eV Core-core repulsion = 17166.224479 eV Total energy + Delta-G solvation = -3595.151158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.77272 -49.87959 -41.99380 -40.23096 -37.47903 -35.17925 -33.94161 -32.44144 -31.41021 -29.94745 -26.49336 -25.07519 -24.39395 -23.94661 -21.04725 -19.47130 -19.28116 -19.16296 -18.72079 -17.99459 -17.54580 -17.17645 -16.56776 -16.41220 -16.20973 -15.90650 -15.68879 -15.17613 -14.70324 -14.45418 -14.25568 -14.15995 -13.74736 -13.55454 -13.26376 -13.11770 -12.61944 -12.39731 -12.22278 -11.97061 -11.80121 -11.52938 -11.18686 -10.84353 -10.73559 -10.10594 -9.61187 -8.36570 -6.43201 -0.80175 -0.57933 1.31178 1.36569 1.46419 1.51022 1.79029 2.09707 2.28572 2.29724 2.76321 2.95058 3.01617 3.31612 3.38046 3.93163 4.05431 4.07095 4.26606 4.48117 4.55601 4.58458 4.70482 4.86152 4.95689 5.00645 5.21765 5.41014 5.44311 5.48052 6.16495 6.20609 6.40520 6.58702 7.01590 7.22340 8.80522 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.005730 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.419089 B = 4885.243221 C = 5530.154680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.058 3.942 3 N -0.578 5.578 4 C 0.225 3.775 5 C -0.542 4.542 6 H 0.026 0.974 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.949 3.051 10 H -0.245 1.245 11 H -0.285 1.285 12 H -0.254 1.254 13 C 0.536 3.464 14 O -0.574 6.574 15 C -0.101 4.101 16 C -0.135 4.135 17 C 0.148 3.852 18 N -0.479 5.479 19 C 0.274 3.726 20 F -0.106 7.106 21 C 0.049 3.951 22 F -0.125 7.125 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.079 0.921 28 H 0.023 0.977 29 H 0.063 0.937 30 H 0.269 0.731 31 H 0.220 0.780 32 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 -10.648 -12.747 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.063 4.063 3 N -0.307 5.307 4 C 0.103 3.897 5 C -0.581 4.581 6 H 0.044 0.956 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.169 1.169 11 H -0.210 1.210 12 H -0.178 1.178 13 C 0.323 3.677 14 O -0.454 6.454 15 C -0.113 4.113 16 C -0.154 4.154 17 C -0.008 4.008 18 N -0.193 5.193 19 C 0.120 3.880 20 F -0.085 7.085 21 C 0.025 3.975 22 F -0.103 7.103 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.097 0.903 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.236 0.764 32 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -13.957 -10.421 -13.354 21.948 hybrid contribution 1.145 1.772 1.222 2.438 sum -12.812 -8.649 -12.132 19.650 Atomic orbital electron populations 1.22350 0.92343 1.05513 1.03264 1.22834 0.96935 0.80927 1.05590 1.47921 1.60493 1.15333 1.06979 1.19431 0.96158 0.92252 0.81839 1.21531 1.00840 1.29736 1.05972 0.95567 1.25882 0.97949 0.97517 0.97330 1.70054 1.24996 1.45162 1.18266 0.85700 0.79180 0.78899 0.79136 1.16888 1.21037 1.17759 1.18387 0.78727 0.86354 0.84193 1.90790 1.47910 1.20100 1.86601 1.20550 0.98505 0.99064 0.93161 1.24034 0.98200 0.91397 1.01782 1.23691 0.93443 0.98757 0.84953 1.67148 1.04890 1.12732 1.34559 1.17940 0.92922 0.94085 0.83079 1.91649 1.68818 1.91691 1.56301 1.18771 0.93737 0.89599 0.95418 1.91572 1.66583 1.55951 1.96204 0.92289 0.90608 0.86481 0.86272 0.90275 0.95938 0.91887 0.92192 0.76369 0.73885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 9.05 71.98 0.65 -1.96 16 2 C 0.06 1.39 5.57 86.38 0.48 1.88 16 3 N -0.58 -22.10 2.47 -829.40 -2.05 -24.15 16 4 C 0.22 10.48 4.22 85.64 0.36 10.84 16 5 C -0.54 -31.45 9.94 25.60 0.25 -31.19 16 6 H 0.03 1.72 8.06 -2.91 -0.02 1.69 16 7 C 0.01 0.67 5.47 84.66 0.46 1.13 16 8 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 9 Si 0.95 43.23 27.47 68.60 1.88 45.11 16 10 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 13 C 0.54 22.22 7.51 86.83 0.65 22.88 16 14 O -0.57 -30.16 15.42 -3.81 -0.06 -30.22 16 15 C -0.10 -3.11 5.64 -19.86 -0.11 -3.22 16 16 C -0.14 -2.32 7.54 22.62 0.17 -2.15 16 17 C 0.15 1.89 11.16 84.60 0.94 2.83 16 18 N -0.48 -10.23 10.34 -196.91 -2.04 -12.26 16 19 C 0.27 7.63 8.42 84.84 0.71 8.34 16 20 F -0.11 -3.07 17.21 44.97 0.77 -2.30 16 21 C 0.05 1.63 7.31 22.83 0.17 1.80 16 22 F -0.12 -5.11 15.92 44.97 0.72 -4.39 16 23 H 0.06 1.08 7.76 -2.39 -0.02 1.06 16 24 H 0.08 0.93 6.96 -2.39 -0.02 0.92 16 25 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.12 2.18 4.13 -2.39 -0.01 2.17 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.02 1.15 6.48 -2.39 -0.02 1.14 16 29 H 0.06 2.55 7.11 -2.39 -0.02 2.53 16 30 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 31 H 0.22 2.48 2.36 -2.91 -0.01 2.47 16 32 H 0.25 0.11 8.06 -2.91 -0.02 0.09 16 Total: -1.00 -83.78 280.88 5.40 -78.38 By element: Atomic # 1 Polarization: -3.30 SS G_CDS: 1.12 Total: -2.18 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 4.75 Total: 11.17 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -3.79 Total: -95.57 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.06 Total: -30.22 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 1.49 Total: -6.69 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.11 kcal Total: -83.78 5.40 -78.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097865739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.201 kcal (2) G-P(sol) polarization free energy of solvation -83.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds