Wall clock time and date at job start Mon Mar 30 2020 00:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21536 * 119.99813 * 359.97438 * 14 13 3 16 16 C 1.48001 * 120.00368 * 180.02562 * 14 13 3 17 17 C 1.39994 * 120.92486 * 359.70887 * 16 14 13 18 18 C 1.37936 * 119.08959 * 179.77694 * 17 16 14 19 19 N 1.31928 * 121.01758 * 0.51568 * 18 17 16 20 20 C 1.31860 * 122.05936 * 359.74320 * 19 18 17 21 21 F 1.35102 * 119.60913 * 179.97438 * 20 19 18 22 22 C 1.38884 * 120.78449 * 359.97438 * 20 19 18 23 23 F 1.35093 * 120.55047 * 180.02562 * 22 20 19 24 24 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 26 26 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 27 27 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 28 28 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 29 29 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 30 30 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 31 31 H 1.07995 * 120.45090 * 0.02562 * 17 16 14 32 32 H 1.08006 * 119.48847 * 180.23378 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.5982 1.5566 0.2000 11 1 6.3940 1.6325 2.6150 12 1 6.5007 -0.5047 1.4741 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3410 2.6320 -0.4325 16 6 0.0436 3.3256 -2.6318 17 6 0.9244 3.3787 -3.7187 18 6 0.5184 4.0004 -4.8811 19 7 -0.6772 4.5501 -4.9762 20 6 -1.5383 4.5297 -3.9779 21 9 -2.7496 5.1087 -4.1292 22 6 -1.2151 3.9200 -2.7726 23 9 -2.1012 3.9014 -1.7531 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.8288 -0.0530 2.9544 30 1 2.2721 2.1230 -1.9977 31 1 1.9067 2.9354 -3.6493 32 1 1.1913 4.0417 -5.7249 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097866263.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:11 Heat of formation + Delta-G solvation = -106.559953 kcal Electronic energy + Delta-G solvation = -20517.577409 eV Core-core repulsion = 16920.761848 eV Total energy + Delta-G solvation = -3596.815560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.72096 -49.82198 -41.62094 -40.26797 -37.03857 -34.70303 -33.90319 -32.55540 -31.81032 -29.07507 -26.42991 -25.01052 -24.62590 -22.51973 -21.37873 -20.04586 -19.24049 -18.63024 -18.38485 -17.93010 -17.35740 -17.14523 -16.48655 -16.24546 -16.12365 -15.71641 -15.59464 -15.09378 -14.61159 -14.40672 -14.27160 -13.87244 -13.65739 -13.48595 -13.18333 -12.87454 -12.70669 -12.18079 -12.06872 -11.64520 -11.48535 -11.19046 -11.05092 -10.81566 -10.54288 -10.12911 -9.76197 -8.15225 -6.32632 -0.77205 -0.52062 1.47526 1.49490 1.60295 1.70314 1.84122 2.22811 2.39857 2.47273 2.80537 3.15692 3.26982 3.40401 3.46287 4.08039 4.26771 4.47588 4.54170 4.59555 4.60741 4.73489 5.03937 5.23341 5.26372 5.39866 5.46077 5.59715 5.76414 5.87150 6.14613 6.24015 6.72844 6.78967 7.27164 7.43332 8.90576 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030346 B = 0.004906 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.477161 B = 5706.335217 C = 6277.139025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.001 0.999 5 C -0.544 4.544 6 H 0.080 0.920 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.255 1.255 11 H -0.289 1.289 12 H -0.281 1.281 13 N -0.682 5.682 14 C 0.537 3.463 15 O -0.566 6.566 16 C -0.102 4.102 17 C -0.100 4.100 18 C 0.145 3.855 19 N -0.482 5.482 20 C 0.270 3.730 21 F -0.107 7.107 22 C 0.056 3.944 23 F -0.119 7.119 24 H 0.046 0.954 25 H 0.024 0.976 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.264 0.736 30 H 0.409 0.591 31 H 0.196 0.804 32 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.251 4.839 -15.725 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.019 0.981 5 C -0.582 4.582 6 H 0.098 0.902 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.179 1.179 11 H -0.215 1.215 12 H -0.207 1.207 13 N -0.332 5.332 14 C 0.323 3.677 15 O -0.446 6.446 16 C -0.114 4.114 17 C -0.121 4.121 18 C -0.011 4.011 19 N -0.197 5.197 20 C 0.116 3.884 21 F -0.086 7.086 22 C 0.032 3.968 23 F -0.097 7.097 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.247 0.753 31 H 0.213 0.787 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.099 5.132 -15.584 16.541 hybrid contribution 0.425 -0.325 1.502 1.594 sum -1.674 4.807 -14.082 14.974 Atomic orbital electron populations 1.21704 0.97385 0.99236 1.00035 1.21802 0.93312 0.99028 1.01821 1.18503 0.94153 0.89212 0.80762 0.98147 1.21579 0.90870 1.39039 1.06744 0.90158 1.25764 1.03222 0.94396 0.95059 1.70060 1.37085 1.38459 1.09844 0.85318 0.79163 0.77696 0.78270 1.17868 1.21543 1.20720 1.46091 1.14282 1.54625 1.18191 1.18238 0.83091 0.79591 0.86797 1.90829 1.52306 1.60365 1.41088 1.20681 0.93500 1.00112 0.97099 1.22911 1.01241 0.97248 0.90668 1.23505 0.89726 0.89469 0.98427 1.67125 1.04920 1.19009 1.28620 1.17990 0.83918 0.97007 0.89494 1.91648 1.39415 1.81718 1.95786 1.18701 0.89357 1.02888 0.85852 1.91583 1.66435 1.94223 1.57490 0.93474 0.95681 0.94151 0.93271 0.90823 0.92655 0.75328 0.78743 0.74659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.51 71.98 0.61 -4.93 16 2 C -0.12 -5.62 5.45 30.59 0.17 -5.45 16 3 C 0.28 13.22 2.24 44.25 0.10 13.32 16 4 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 5 C -0.54 -26.48 8.73 25.60 0.22 -26.26 16 6 H 0.08 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.80 5.30 84.66 0.45 1.25 16 8 N -0.92 -50.42 11.30 21.45 0.24 -50.18 16 9 Si 0.97 39.65 29.54 68.60 2.03 41.67 16 10 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 11 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 13 N -0.68 -25.07 4.98 -448.86 -2.23 -27.31 16 14 C 0.54 20.32 6.36 86.83 0.55 20.87 16 15 O -0.57 -26.88 12.61 -3.83 -0.05 -26.93 16 16 C -0.10 -2.87 5.91 -19.86 -0.12 -2.99 16 17 C -0.10 -1.64 9.61 22.62 0.22 -1.42 16 18 C 0.15 1.89 11.16 84.61 0.94 2.84 16 19 N -0.48 -10.16 10.34 -196.91 -2.04 -12.20 16 20 C 0.27 7.13 8.42 84.84 0.71 7.85 16 21 F -0.11 -2.95 17.21 44.97 0.77 -2.17 16 22 C 0.06 1.72 7.34 22.83 0.17 1.89 16 23 F -0.12 -4.41 15.63 44.97 0.70 -3.71 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.02 1.19 7.84 -2.39 -0.02 1.17 16 26 H 0.04 1.71 5.64 -2.39 -0.01 1.70 16 27 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.07 3.89 5.96 -2.39 -0.01 3.87 16 29 H 0.26 13.84 8.31 -92.70 -0.77 13.07 16 30 H 0.41 11.37 6.68 -92.71 -0.62 10.76 16 31 H 0.20 1.81 6.53 -2.91 -0.02 1.80 16 32 H 0.24 0.52 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -68.53 282.59 4.02 -64.51 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.56 Total: 9.35 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 4.03 Total: 6.97 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -4.03 Total: -89.68 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.05 Total: -26.93 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 1.48 Total: -5.88 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.67 kcal Total: -68.53 4.02 -64.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097866263.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.049 kcal (2) G-P(sol) polarization free energy of solvation -68.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds