Wall clock time and date at job start Mon Mar 30 2020 00:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21527 * 119.99995 * 359.97438 * 14 13 3 16 16 C 1.48007 * 119.99874 * 180.02562 * 14 13 3 17 17 C 1.39990 * 120.92498 * 359.71296 * 16 14 13 18 18 C 1.37934 * 119.09188 * 179.77837 * 17 16 14 19 19 N 1.31938 * 121.01486 * 0.51224 * 18 17 16 20 20 C 1.31861 * 122.05770 * 359.74271 * 19 18 17 21 21 F 1.35100 * 119.60940 * 179.97438 * 20 19 18 22 22 C 1.38882 * 120.78525 * 359.97438 * 20 19 18 23 23 F 1.35101 * 120.55181 * 180.02562 * 22 20 19 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 31 31 H 1.07997 * 120.45674 * 0.02562 * 17 16 14 32 32 H 1.07997 * 119.49697 * 180.23444 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3408 2.6326 0.4322 16 6 0.0439 3.3265 2.6315 17 6 0.9206 3.3701 3.7220 18 6 0.5187 4.0012 4.8808 19 7 -0.6769 4.5511 4.9759 20 6 -1.5381 4.5305 3.9776 21 9 -2.7497 5.1087 4.1292 22 6 -1.2145 3.9216 2.7721 23 9 -2.1003 3.9037 1.7521 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8292 -0.0604 -2.9503 30 1 2.2720 2.1231 1.9978 31 1 1.8997 2.9193 3.6556 32 1 1.1912 4.0420 5.7248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097866264.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:13 Heat of formation + Delta-G solvation = -86.248537 kcal Electronic energy + Delta-G solvation = -20516.567570 eV Core-core repulsion = 16920.632779 eV Total energy + Delta-G solvation = -3595.934791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.60485 -48.66331 -40.47593 -38.85904 -35.27187 -33.29472 -32.28530 -30.99867 -30.72311 -27.25854 -25.14626 -23.81790 -23.05011 -21.01718 -19.64697 -18.73457 -18.09644 -17.52300 -16.90073 -16.82388 -15.80769 -15.48438 -15.20259 -14.89344 -14.64362 -14.58751 -14.29774 -13.65727 -13.28409 -13.13055 -12.81123 -12.57720 -12.21840 -11.65046 -11.34752 -11.10070 -10.91657 -10.50388 -10.35396 -10.31317 -10.08403 -9.73343 -9.36213 -9.18521 -9.14174 -8.61048 -8.05502 -6.21969 -4.32749 0.30646 0.44088 2.85484 2.91908 3.19401 3.25441 3.25931 3.54042 3.63272 3.83173 4.23437 4.27696 4.33263 4.65452 5.01561 5.09760 5.35806 5.42064 5.52097 6.19777 6.29699 6.35007 6.54576 6.91969 7.06844 7.14822 7.15895 7.25960 7.47716 7.57681 7.75863 8.05053 8.38727 8.59884 8.83536 9.34461 10.83312 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030370 B = 0.004905 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.743191 B = 5707.333776 C = 6278.182842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.691 5.691 14 C 0.538 3.462 15 O -0.518 6.518 16 C -0.087 4.087 17 C -0.125 4.125 18 C 0.120 3.880 19 N -0.479 5.479 20 C 0.275 3.725 21 F -0.100 7.100 22 C 0.082 3.918 23 F -0.094 7.094 24 H 0.051 0.949 25 H 0.035 0.965 26 H 0.025 0.975 27 H 0.033 0.967 28 H 0.102 0.898 29 H 0.267 0.733 30 H 0.389 0.611 31 H 0.161 0.839 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.456 4.587 12.510 13.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.339 5.339 14 C 0.321 3.679 15 O -0.395 6.395 16 C -0.099 4.099 17 C -0.146 4.146 18 C -0.036 4.036 19 N -0.193 5.193 20 C 0.119 3.881 21 F -0.079 7.079 22 C 0.058 3.942 23 F -0.072 7.072 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.223 0.777 31 H 0.178 0.822 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.303 4.855 12.309 13.914 hybrid contribution 1.096 -0.279 -0.565 1.264 sum -3.207 4.576 11.744 13.006 Atomic orbital electron populations 1.21857 0.98285 0.98338 1.01180 1.21953 0.92620 0.99499 1.02588 1.18928 0.94561 0.89307 0.80310 0.92890 1.21131 0.90314 1.39677 1.06588 0.91996 1.24880 0.98749 0.94617 0.95276 1.69877 1.35381 1.37169 1.09279 0.86484 0.84570 0.78367 0.77557 1.20094 1.21073 1.20142 1.46466 1.13598 1.54823 1.19001 1.17720 0.83921 0.80395 0.85836 1.90846 1.51053 1.58804 1.38832 1.21026 0.92560 0.98665 0.97633 1.22481 1.01063 0.98878 0.92146 1.22554 0.90658 0.92678 0.97755 1.66953 1.04031 1.18858 1.29486 1.18040 0.83631 0.96759 0.89647 1.91671 1.38838 1.81633 1.95794 1.18447 0.89088 1.01086 0.85592 1.91658 1.65515 1.93780 1.56250 0.92974 0.94559 0.95561 0.94814 0.87989 0.92336 0.77711 0.82190 0.80180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.13 -2.94 5.45 -26.74 -0.15 -3.09 16 3 C 0.27 6.36 2.24 -69.08 -0.15 6.21 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.30 8.73 -34.44 -0.30 -13.60 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.64 11.30 55.43 0.63 -23.01 16 9 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 N -0.69 -13.02 4.98 -55.83 -0.28 -13.29 16 14 C 0.54 10.16 6.36 -12.26 -0.08 10.08 16 15 O -0.52 -11.76 12.61 5.34 0.07 -11.69 16 16 C -0.09 -1.28 5.91 -104.61 -0.62 -1.90 16 17 C -0.13 -1.30 9.61 -39.04 -0.38 -1.67 16 18 C 0.12 1.10 11.16 -17.62 -0.20 0.91 16 19 N -0.48 -5.86 10.34 -13.59 -0.14 -6.00 16 20 C 0.27 3.79 8.42 -17.30 -0.15 3.64 16 21 F -0.10 -1.40 17.21 2.25 0.04 -1.36 16 22 C 0.08 1.26 7.34 -38.72 -0.28 0.97 16 23 F -0.09 -1.65 15.63 2.25 0.04 -1.62 16 24 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 25 H 0.04 0.76 5.65 -51.93 -0.29 0.46 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 2.61 5.95 -51.93 -0.31 2.31 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 30 H 0.39 5.98 6.68 -40.82 -0.27 5.71 16 31 H 0.16 1.23 6.53 -52.49 -0.34 0.89 16 32 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -29.51 282.57 -5.32 -34.83 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -2.83 Total: 2.77 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.08 Total: 0.53 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.21 Total: -42.31 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.07 Total: -11.69 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.07 Total: -2.98 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.51 -5.32 -34.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097866264.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.421 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds