Wall clock time and date at job start Mon Mar 30 2020 00:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21527 * 119.99995 * 359.97438 * 14 13 3 16 16 C 1.48007 * 119.99874 * 180.02562 * 14 13 3 17 17 C 1.39990 * 120.92498 * 359.71296 * 16 14 13 18 18 C 1.37934 * 119.09188 * 179.77837 * 17 16 14 19 19 N 1.31938 * 121.01486 * 0.51224 * 18 17 16 20 20 C 1.31861 * 122.05770 * 359.74271 * 19 18 17 21 21 F 1.35100 * 119.60940 * 179.97438 * 20 19 18 22 22 C 1.38882 * 120.78525 * 359.97438 * 20 19 18 23 23 F 1.35101 * 120.55181 * 180.02562 * 22 20 19 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 31 31 H 1.07997 * 120.45674 * 0.02562 * 17 16 14 32 32 H 1.07997 * 119.49697 * 180.23444 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3408 2.6326 0.4322 16 6 0.0439 3.3265 2.6315 17 6 0.9206 3.3701 3.7220 18 6 0.5187 4.0012 4.8808 19 7 -0.6769 4.5511 4.9759 20 6 -1.5381 4.5305 3.9776 21 9 -2.7497 5.1087 4.1292 22 6 -1.2145 3.9216 2.7721 23 9 -2.1003 3.9037 1.7521 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8292 -0.0604 -2.9503 30 1 2.2720 2.1231 1.9978 31 1 1.8997 2.9193 3.6556 32 1 1.1912 4.0420 5.7248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097866264.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:12 Heat of formation + Delta-G solvation = -106.403675 kcal Electronic energy + Delta-G solvation = -20517.441563 eV Core-core repulsion = 16920.632779 eV Total energy + Delta-G solvation = -3596.808783 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.72057 -49.82136 -41.62116 -40.26826 -37.03875 -34.70280 -33.90074 -32.55419 -31.81094 -29.07237 -26.42882 -25.00816 -24.62484 -22.51949 -21.37867 -20.04547 -19.24000 -18.62974 -18.38139 -17.93029 -17.35290 -17.14432 -16.48616 -16.24978 -16.12314 -15.71670 -15.59578 -15.09617 -14.60012 -14.40407 -14.27335 -13.87468 -13.65399 -13.48141 -13.16913 -12.91284 -12.63517 -12.21419 -12.09101 -11.64037 -11.48549 -11.19059 -11.07295 -10.81479 -10.52034 -10.12965 -9.76301 -8.14576 -6.32338 -0.77234 -0.52086 1.49305 1.50592 1.58155 1.70307 1.84083 2.22777 2.39897 2.47621 2.80480 3.15904 3.26965 3.40375 3.46284 4.08006 4.26757 4.47574 4.54259 4.59516 4.60712 4.73540 5.03922 5.23346 5.26346 5.39934 5.46122 5.59419 5.76543 5.87334 6.14835 6.23939 6.72600 6.79004 7.27201 7.43525 8.90715 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030370 B = 0.004905 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.743191 B = 5707.333776 C = 6278.182842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.080 0.920 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.292 1.292 12 H -0.272 1.272 13 N -0.682 5.682 14 C 0.537 3.463 15 O -0.566 6.566 16 C -0.102 4.102 17 C -0.101 4.101 18 C 0.145 3.855 19 N -0.482 5.482 20 C 0.270 3.730 21 F -0.107 7.107 22 C 0.056 3.944 23 F -0.119 7.119 24 H 0.024 0.976 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.264 0.736 30 H 0.409 0.591 31 H 0.196 0.804 32 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.243 4.785 15.690 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.098 0.902 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.186 1.186 11 H -0.218 1.218 12 H -0.197 1.197 13 N -0.332 5.332 14 C 0.323 3.677 15 O -0.446 6.446 16 C -0.114 4.114 17 C -0.121 4.121 18 C -0.011 4.011 19 N -0.197 5.197 20 C 0.116 3.884 21 F -0.086 7.086 22 C 0.032 3.968 23 F -0.097 7.097 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.247 0.753 31 H 0.213 0.787 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.092 5.071 15.541 16.480 hybrid contribution 0.431 -0.309 -1.471 1.564 sum -1.661 4.762 14.069 14.946 Atomic orbital electron populations 1.21705 0.97385 0.99237 1.00030 1.21802 0.93310 0.99033 1.01834 1.18494 0.94119 0.89205 0.80750 0.98167 1.21518 0.90881 1.39119 1.06952 0.90183 1.25762 1.03232 0.94350 0.95031 1.70046 1.37219 1.38271 1.09866 0.85418 0.79110 0.78421 0.77509 1.18568 1.21763 1.19679 1.46095 1.14269 1.54644 1.18193 1.18236 0.83091 0.79584 0.86803 1.90826 1.52323 1.60375 1.41058 1.20682 0.93538 1.00101 0.97071 1.22909 1.01255 0.97278 0.90630 1.23506 0.89740 0.89427 0.98451 1.67130 1.04883 1.19092 1.28572 1.17989 0.83916 0.97010 0.89489 1.91647 1.39388 1.81747 1.95783 1.18703 0.89345 1.02908 0.85850 1.91586 1.66443 1.94229 1.57476 0.95685 0.94153 0.93469 0.93297 0.90783 0.92641 0.75332 0.78737 0.74658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.51 71.98 0.61 -4.93 16 2 C -0.12 -5.63 5.45 30.59 0.17 -5.46 16 3 C 0.28 13.27 2.24 44.24 0.10 13.37 16 4 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 5 C -0.55 -26.62 8.73 25.60 0.22 -26.40 16 6 H 0.08 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -50.40 11.30 21.45 0.24 -50.16 16 9 Si 0.97 39.60 29.54 68.60 2.03 41.63 16 10 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 11 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 13 N -0.68 -25.10 4.98 -448.84 -2.23 -27.34 16 14 C 0.54 20.34 6.36 86.83 0.55 20.89 16 15 O -0.57 -26.90 12.61 -3.80 -0.05 -26.94 16 16 C -0.10 -2.88 5.91 -19.86 -0.12 -2.99 16 17 C -0.10 -1.64 9.61 22.62 0.22 -1.43 16 18 C 0.15 1.90 11.16 84.60 0.94 2.84 16 19 N -0.48 -10.17 10.34 -196.91 -2.04 -12.21 16 20 C 0.27 7.14 8.42 84.84 0.71 7.85 16 21 F -0.11 -2.95 17.21 44.97 0.77 -2.18 16 22 C 0.06 1.72 7.34 22.83 0.17 1.89 16 23 F -0.12 -4.42 15.63 44.97 0.70 -3.71 16 24 H 0.02 1.19 7.84 -2.39 -0.02 1.17 16 25 H 0.04 1.71 5.65 -2.39 -0.01 1.70 16 26 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 28 H 0.07 3.91 5.95 -2.39 -0.01 3.89 16 29 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 30 H 0.41 11.38 6.68 -92.71 -0.62 10.76 16 31 H 0.20 1.81 6.53 -2.91 -0.02 1.80 16 32 H 0.24 0.52 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -68.47 282.57 4.02 -64.45 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.56 Total: 9.55 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 4.03 Total: 6.92 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -4.03 Total: -89.71 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 1.48 Total: -5.89 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -68.47 4.02 -64.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097866264.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.955 kcal (2) G-P(sol) polarization free energy of solvation -68.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds