Wall clock time and date at job start Mon Mar 30 2020 00:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46889 * 2 1 4 4 C 1.50703 * 109.47356 * 119.99959 * 2 1 3 5 5 H 1.07995 * 119.99744 * 120.00302 * 4 2 1 6 6 C 1.37877 * 119.99696 * 300.00562 * 4 2 1 7 7 N 1.31517 * 120.00183 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99804 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47524 * 59.99558 * 8 6 4 10 10 H 1.48502 * 109.47021 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46950 * 299.99356 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00309 * 2 1 3 13 13 C 1.46502 * 119.99690 * 299.99401 * 12 2 1 14 14 C 1.34778 * 120.00010 * 119.99934 * 12 2 1 15 15 O 1.21523 * 120.00176 * 6.95831 * 14 12 2 16 16 C 1.48004 * 119.99449 * 186.95981 * 14 12 2 17 17 C 1.39985 * 120.93013 * 21.93778 * 16 14 12 18 18 C 1.37934 * 119.09323 * 179.77439 * 17 16 14 19 19 N 1.31935 * 121.01716 * 0.51239 * 18 17 16 20 20 C 1.31866 * 122.05639 * 359.73772 * 19 18 17 21 21 F 1.35090 * 119.60843 * 179.97438 * 20 19 18 22 22 C 1.38882 * 120.78024 * 359.97438 * 20 19 18 23 23 F 1.35110 * 120.54558 * 180.02562 * 22 20 19 24 24 H 1.08997 * 109.47653 * 60.00587 * 1 2 3 25 25 H 1.09004 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47335 * 299.99460 * 1 2 3 27 27 H 0.97000 * 119.99877 * 179.97438 * 7 6 4 28 28 H 1.08995 * 109.46974 * 83.99611 * 13 12 2 29 29 H 1.08996 * 109.47372 * 323.99130 * 13 12 2 30 30 H 1.08997 * 109.46842 * 203.99422 * 13 12 2 31 31 H 1.07998 * 120.45387 * 359.97438 * 17 16 14 32 32 H 1.08002 * 119.49168 * 180.22491 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8074 -1.1189 4.0078 10 1 1.8278 -0.4192 5.2204 11 1 1.8281 -2.5197 4.0082 12 7 2.0183 -0.6905 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.1913 1.0848 -1.8316 16 6 3.1592 -0.6806 -3.3641 17 6 2.3902 -1.7261 -3.8887 18 6 2.7633 -2.2970 -5.0876 19 7 3.8339 -1.8790 -5.7356 20 6 4.5914 -0.9012 -5.2784 21 9 5.6771 -0.5130 -5.9824 22 6 4.2863 -0.2659 -4.0817 23 9 5.0655 0.7357 -3.6179 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7087 1.1613 3.4844 28 1 0.6859 -2.1469 -1.9049 29 1 1.6342 -2.6224 -0.4756 30 1 2.4102 -2.5537 -2.0759 31 1 1.5150 -2.0788 -3.3634 32 1 2.1726 -3.1016 -5.5001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097866334.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:10 Heat of formation + Delta-G solvation = -57.243930 kcal Electronic energy + Delta-G solvation = -20689.563468 eV Core-core repulsion = 17094.886411 eV Total energy + Delta-G solvation = -3594.677057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.58333 -48.64881 -40.62649 -38.82944 -35.66696 -33.65709 -32.35738 -30.92498 -29.39323 -26.80732 -25.38812 -24.98167 -23.69800 -21.63587 -19.43580 -18.23837 -17.97330 -17.41364 -16.83197 -16.59641 -16.01136 -15.63809 -15.13858 -15.03600 -14.63840 -14.51596 -14.20301 -13.57948 -13.26471 -13.02208 -12.88112 -12.67181 -12.40707 -11.78306 -11.45680 -11.15527 -10.94078 -10.85243 -10.43467 -10.31667 -10.23026 -10.00439 -9.37885 -9.24686 -9.07954 -8.52848 -7.84951 -6.16847 -4.25708 0.35212 0.46711 2.84641 2.95371 3.22612 3.28608 3.29412 3.45815 3.57104 3.84325 4.23151 4.31560 4.36476 4.50473 5.01776 5.14724 5.22936 5.37303 5.44488 5.53906 5.69476 6.15483 6.23257 6.60439 6.66681 6.88800 7.17124 7.18156 7.33639 7.58422 7.86311 8.03686 8.25414 8.59203 8.79554 9.40876 10.88595 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030700 B = 0.005034 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.846013 B = 5560.807423 C = 5798.940245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.576 5.576 13 C 0.064 3.936 14 C 0.541 3.459 15 O -0.522 6.522 16 C -0.086 4.086 17 C -0.141 4.141 18 C 0.115 3.885 19 N -0.478 5.478 20 C 0.273 3.727 21 F -0.101 7.101 22 C 0.082 3.918 23 F -0.097 7.097 24 H 0.012 0.988 25 H 0.032 0.968 26 H 0.096 0.904 27 H 0.265 0.735 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.178 0.822 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.255 -7.974 -12.676 14.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.084 0.916 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.307 5.307 13 C -0.079 4.079 14 C 0.326 3.674 15 O -0.399 6.399 16 C -0.098 4.098 17 C -0.161 4.161 18 C -0.041 4.041 19 N -0.193 5.193 20 C 0.118 3.882 21 F -0.080 7.080 22 C 0.057 3.943 23 F -0.075 7.075 24 H 0.032 0.968 25 H 0.051 0.949 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.195 0.805 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.660 -7.563 -13.117 15.155 hybrid contribution 0.468 0.067 1.493 1.566 sum 1.128 -7.496 -11.623 13.877 Atomic orbital electron populations 1.22104 0.97661 0.99659 1.01108 1.19076 0.91049 0.94571 0.79434 0.91633 1.21219 1.32288 1.13262 0.90132 0.92150 1.24883 0.94793 0.94927 0.99013 1.69857 1.36023 1.22405 1.24099 0.86517 0.79311 0.79521 0.81836 1.20192 1.21081 1.20161 1.48184 1.47780 1.11498 1.23222 1.22247 0.98762 0.83480 1.03376 1.17792 0.80661 0.86218 0.82727 1.90823 1.53053 1.19081 1.76911 1.20911 0.94193 0.97135 0.97558 1.23287 1.01879 0.94352 0.96555 1.22596 0.91596 0.98786 0.91090 1.66934 1.06281 1.11309 1.34772 1.17997 0.87433 0.94423 0.88352 1.91665 1.49607 1.88826 1.77872 1.18452 0.92231 0.90085 0.93484 1.91652 1.71836 1.56262 1.87714 0.96846 0.94903 0.88527 0.92460 0.92618 0.89575 0.91481 0.80466 0.80217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.97 37.16 0.33 -2.93 16 2 C 0.26 6.25 2.63 -69.08 -0.18 6.06 16 3 H 0.07 1.86 6.92 -51.93 -0.36 1.51 16 4 C -0.53 -13.71 8.04 -34.44 -0.28 -13.98 16 5 H 0.06 1.53 7.24 -52.49 -0.38 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.24 11.32 55.43 0.63 -23.61 16 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 12 N -0.58 -11.43 2.75 -176.32 -0.49 -11.91 16 13 C 0.06 0.92 7.73 59.85 0.46 1.38 16 14 C 0.54 10.97 7.51 -12.26 -0.09 10.88 16 15 O -0.52 -12.86 15.13 5.35 0.08 -12.78 16 16 C -0.09 -1.34 5.55 -104.61 -0.58 -1.92 16 17 C -0.14 -1.53 7.67 -39.04 -0.30 -1.83 16 18 C 0.12 1.09 11.16 -17.62 -0.20 0.89 16 19 N -0.48 -5.99 10.34 -13.59 -0.14 -6.13 16 20 C 0.27 3.89 8.42 -17.30 -0.15 3.74 16 21 F -0.10 -1.44 17.21 2.25 0.04 -1.40 16 22 C 0.08 1.31 7.31 -38.72 -0.28 1.03 16 23 F -0.10 -1.78 15.87 2.25 0.04 -1.74 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.06 0.64 7.14 -51.93 -0.37 0.27 16 29 H 0.09 1.33 6.96 -51.93 -0.36 0.97 16 30 H 0.07 0.77 5.14 -51.93 -0.27 0.50 16 31 H 0.18 1.54 4.40 -52.49 -0.23 1.31 16 32 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 279.83 15.07 4.22 4.22 Total: -1.00 -31.00 279.83 -4.66 -35.67 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -2.66 Total: -2.67 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -1.35 Total: 4.98 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.00 Total: -41.65 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.08 Total: -12.78 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.07 Total: -3.14 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.00 -4.66 -35.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097866334.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.577 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds