Wall clock time and date at job start Mon Mar 30 2020 00:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47119 * 2 1 4 4 C 1.50701 * 109.47201 * 239.99560 * 2 1 3 5 5 H 1.08002 * 119.99977 * 239.99689 * 4 2 1 6 6 C 1.37878 * 119.99607 * 60.00418 * 4 2 1 7 7 N 1.31513 * 120.00346 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99762 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47252 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46934 * 119.99779 * 8 6 4 11 11 H 1.48496 * 109.47171 * 239.99814 * 8 6 4 12 12 N 1.46507 * 109.47146 * 119.99852 * 2 1 3 13 13 C 1.46499 * 119.99851 * 59.99722 * 12 2 1 14 14 C 1.34770 * 119.99970 * 240.00218 * 12 2 1 15 15 O 1.21535 * 120.00270 * 354.67292 * 14 12 2 16 16 C 1.48003 * 120.00058 * 174.95044 * 14 12 2 17 17 C 1.39987 * 120.92413 * 316.37292 * 16 14 12 18 18 C 1.37935 * 119.09568 * 179.74675 * 17 16 14 19 19 N 1.31937 * 121.01029 * 0.54003 * 18 17 16 20 20 C 1.31857 * 122.06250 * 359.71043 * 19 18 17 21 21 F 1.35099 * 119.61442 * 180.02562 * 20 19 18 22 22 C 1.38885 * 120.78225 * 0.02903 * 20 19 18 23 23 F 1.35098 * 120.55034 * 179.97438 * 22 20 19 24 24 H 1.09000 * 109.47810 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47314 * 300.00522 * 1 2 3 26 26 H 1.09003 * 109.47379 * 60.00156 * 1 2 3 27 27 H 0.96995 * 120.00006 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46941 * 301.18125 * 13 12 2 29 29 H 1.09004 * 109.46904 * 61.17977 * 13 12 2 30 30 H 1.08997 * 109.46715 * 181.18007 * 13 12 2 31 31 H 1.07998 * 120.45582 * 359.97438 * 17 16 14 32 32 H 1.08002 * 119.49707 * 180.23023 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1473 -2.2865 -3.6037 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1860 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.1667 1.0960 1.8448 16 6 3.1940 -0.6966 3.3454 17 6 2.2701 -1.4314 4.0978 18 6 2.6859 -2.0364 5.2656 19 7 3.9320 -1.9223 5.6838 20 6 4.8359 -1.2367 5.0119 21 9 6.0983 -1.1527 5.4856 22 6 4.5056 -0.5996 3.8228 23 9 5.4353 0.1022 3.1385 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.7082 1.1607 -3.4844 28 1 0.5797 -2.1916 1.4722 29 1 2.0519 -2.7051 0.6136 30 1 2.0980 -2.4262 2.3710 31 1 1.2466 -1.5265 3.7665 32 1 1.9794 -2.6080 5.8491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097866335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:12 Heat of formation + Delta-G solvation = -68.198284 kcal Electronic energy + Delta-G solvation = -20688.046586 eV Core-core repulsion = 17092.894512 eV Total energy + Delta-G solvation = -3595.152073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.62001 -48.69662 -40.60483 -38.84216 -35.59812 -33.55608 -32.40913 -30.93482 -29.42297 -26.56002 -25.39906 -25.02475 -23.82566 -21.63828 -19.39507 -18.28035 -17.85230 -17.52354 -16.87741 -16.60229 -16.14480 -15.66598 -15.13513 -15.01728 -14.69162 -14.43425 -14.20453 -13.53387 -13.34882 -13.03828 -12.89677 -12.69928 -12.35489 -11.82929 -11.63448 -11.15395 -10.91280 -10.85664 -10.43841 -10.33519 -10.25048 -10.01608 -9.37219 -9.24785 -9.11792 -8.52716 -7.82833 -6.16352 -4.24725 0.37679 0.43250 2.77571 2.96380 3.21437 3.28408 3.30930 3.35324 3.52993 3.80733 4.20738 4.31932 4.39608 4.48857 4.99613 5.14736 5.20353 5.40152 5.41826 5.52155 5.86017 6.17647 6.19838 6.61019 6.66321 6.89131 7.15268 7.17879 7.33579 7.59611 7.87309 8.03873 8.26595 8.58453 8.80769 9.41956 10.89234 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.029123 B = 0.005172 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.209909 B = 5412.800902 C = 5712.999708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.575 5.575 13 C 0.068 3.932 14 C 0.542 3.458 15 O -0.523 6.523 16 C -0.079 4.079 17 C -0.126 4.126 18 C 0.119 3.881 19 N -0.480 5.480 20 C 0.279 3.721 21 F -0.100 7.100 22 C 0.076 3.924 23 F -0.100 7.100 24 H 0.032 0.968 25 H 0.013 0.987 26 H 0.096 0.904 27 H 0.264 0.736 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.164 0.836 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 -7.440 13.301 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.306 5.306 13 C -0.076 4.076 14 C 0.326 3.674 15 O -0.400 6.400 16 C -0.091 4.091 17 C -0.146 4.146 18 C -0.037 4.037 19 N -0.194 5.194 20 C 0.123 3.877 21 F -0.079 7.079 22 C 0.051 3.949 23 F -0.078 7.078 24 H 0.051 0.949 25 H 0.032 0.968 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.181 0.819 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.569 -7.078 13.724 15.452 hybrid contribution 0.487 -0.038 -1.628 1.700 sum 1.056 -7.116 12.095 14.073 Atomic orbital electron populations 1.22096 0.97678 0.99650 1.01120 1.19077 0.91083 0.94541 0.79463 0.91624 1.21291 1.32078 1.13169 0.90102 0.92088 1.24882 0.94829 0.94937 0.99031 1.69872 1.36197 1.22528 1.23863 0.86408 0.78629 0.79591 0.82592 1.19799 1.20848 1.20811 1.48208 1.47674 1.11680 1.23016 1.22010 1.00989 0.83168 1.01407 1.17802 0.80585 0.86356 0.82635 1.90823 1.54387 1.18354 1.76453 1.20891 0.91952 0.98014 0.98222 1.22501 1.01590 0.95691 0.94840 1.22556 0.90400 0.97025 0.93735 1.66947 1.03076 1.16439 1.32956 1.17990 0.82006 0.97704 0.89981 1.91672 1.34139 1.94051 1.88015 1.18407 0.87601 0.96957 0.91889 1.91638 1.62956 1.75275 1.77967 0.94867 0.96832 0.88507 0.92590 0.91740 0.91227 0.91701 0.81882 0.80146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.88 37.15 0.33 -2.95 16 2 C 0.26 6.28 2.63 -69.08 -0.18 6.10 16 3 H 0.07 1.87 6.91 -51.93 -0.36 1.51 16 4 C -0.53 -13.82 8.31 -34.44 -0.29 -14.10 16 5 H 0.06 1.58 7.07 -52.49 -0.37 1.21 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.38 11.32 55.43 0.63 -23.75 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.58 -11.54 2.75 -176.32 -0.49 -12.03 16 13 C 0.07 1.01 8.85 59.85 0.53 1.54 16 14 C 0.54 10.97 7.17 -12.26 -0.09 10.88 16 15 O -0.52 -12.87 15.85 5.33 0.08 -12.79 16 16 C -0.08 -1.22 5.09 -104.61 -0.53 -1.75 16 17 C -0.13 -1.35 7.43 -39.04 -0.29 -1.64 16 18 C 0.12 1.09 11.16 -17.62 -0.20 0.89 16 19 N -0.48 -5.90 10.34 -13.59 -0.14 -6.04 16 20 C 0.28 3.91 8.42 -17.30 -0.15 3.77 16 21 F -0.10 -1.41 17.21 2.25 0.04 -1.37 16 22 C 0.08 1.20 7.31 -38.72 -0.28 0.91 16 23 F -0.10 -1.82 16.40 2.25 0.04 -1.79 16 24 H 0.03 0.67 7.11 -51.93 -0.37 0.30 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.06 0.86 7.12 -51.93 -0.37 0.49 16 29 H 0.07 1.12 7.24 -51.93 -0.38 0.74 16 30 H 0.06 0.76 4.30 -51.93 -0.22 0.54 16 31 H 0.16 1.38 6.90 -52.49 -0.36 1.01 16 32 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 282.51 15.07 4.26 4.26 Total: -1.00 -31.14 282.51 -4.57 -35.71 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -2.72 Total: -3.11 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -1.24 Total: 5.32 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.00 Total: -41.82 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.16 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.14 -4.57 -35.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097866335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.490 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds