Wall clock time and date at job start Mon Mar 30 2020 01:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99879 * 2 1 4 4 H 1.48501 * 109.47025 * 270.00230 * 3 2 1 5 5 H 1.48500 * 109.47064 * 29.99828 * 3 2 1 6 6 H 1.48490 * 109.47118 * 150.00099 * 3 2 1 7 7 C 1.37873 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99755 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00253 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.46890 * 111.00499 * 66.04485 * 10 9 7 12 12 C 1.53005 * 109.47335 * 200.32507 * 11 10 9 13 13 C 1.52998 * 117.49484 * 245.07897 * 12 11 10 14 14 C 1.52997 * 60.00109 * 252.50888 * 13 12 11 15 15 C 1.46900 * 110.99626 * 189.99693 * 10 9 7 16 16 N 1.46505 * 109.47249 * 84.36349 * 15 10 9 17 17 C 1.44535 * 120.61953 * 262.03219 * 16 15 10 18 18 C 1.53421 * 111.72155 * 180.02562 * 17 16 15 19 19 S 1.82067 * 103.93457 * 359.78416 * 18 17 16 20 20 C 1.33006 * 120.61069 * 82.05052 * 16 15 10 21 21 O 1.21615 * 125.20427 * 359.93961 * 20 16 15 22 22 H 0.96995 * 120.00428 * 0.02562 * 1 2 3 23 23 H 1.08991 * 109.47217 * 59.99802 * 9 7 2 24 24 H 1.09001 * 109.46767 * 299.99963 * 9 7 2 25 25 H 1.09000 * 109.47111 * 320.32482 * 11 10 9 26 26 H 1.09007 * 109.47412 * 80.31931 * 11 10 9 27 27 H 1.08998 * 115.54637 * 30.78717 * 12 11 10 28 28 H 1.09000 * 117.50209 * 0.02562 * 13 12 11 29 29 H 1.09001 * 117.49612 * 145.01681 * 13 12 11 30 30 H 1.08997 * 117.50282 * 252.51260 * 14 13 12 31 31 H 1.09001 * 117.49743 * 107.49020 * 14 13 12 32 32 H 1.09001 * 109.47134 * 324.36782 * 15 10 9 33 33 H 1.08995 * 109.47423 * 204.36498 * 15 10 9 34 34 H 1.09004 * 109.03586 * 300.61752 * 17 16 15 35 35 H 1.08997 * 109.04148 * 59.53914 * 17 16 15 36 36 H 1.09002 * 110.53745 * 118.61099 * 18 17 16 37 37 H 1.08999 * 110.53778 * 241.24116 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 2.9711 -3.6540 1.2526 12 6 4.2560 -4.4574 1.0412 13 6 4.4058 -5.7672 1.8177 14 6 5.2358 -4.5443 2.2132 15 6 1.5214 -4.8935 -0.2386 16 7 1.3565 -5.0981 -1.6799 17 6 0.1068 -4.7764 -2.3309 18 6 0.1586 -5.0696 -3.8359 19 16 1.8440 -5.7052 -4.1010 20 6 2.3540 -5.5837 -2.4135 21 8 3.4511 -5.8920 -1.9888 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 3.2237 -2.6378 1.5553 26 1 2.3711 -4.1262 2.0306 27 1 4.6758 -4.4168 0.0362 28 1 3.5890 -6.0568 2.4787 29 1 4.9242 -6.5888 1.3233 30 1 6.3002 -4.5612 1.9791 31 1 4.9650 -4.0290 3.1348 32 1 0.5423 -4.8760 0.2402 33 1 2.1151 -5.7069 0.1782 34 1 -0.6910 -5.3673 -1.8808 35 1 -0.1088 -3.7181 -2.1837 36 1 -0.5837 -5.8213 -4.1049 37 1 0.0010 -4.1560 -4.4092 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103459489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:28 Heat of formation + Delta-G solvation = -12.031200 kcal Electronic energy + Delta-G solvation = -19267.316883 eV Core-core repulsion = 16364.273879 eV Total energy + Delta-G solvation = -2903.043005 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05784 -39.03709 -37.75562 -36.53608 -34.56302 -31.84874 -29.40719 -28.36583 -26.13759 -25.38755 -23.23810 -22.88676 -21.64534 -21.16674 -19.15426 -18.59374 -17.84825 -17.52423 -16.72593 -16.52799 -15.89948 -15.47449 -15.26834 -15.22826 -15.04541 -14.86129 -14.32576 -13.89327 -13.70106 -13.34349 -13.08271 -13.00382 -12.70248 -12.58031 -12.33583 -12.17315 -11.95728 -11.88351 -11.39901 -11.13163 -10.93904 -10.73688 -10.61556 -10.18358 -9.25002 -9.07736 -8.21714 -6.28992 0.14263 0.93352 1.23773 1.38905 1.40325 1.50572 2.16005 2.39050 2.94083 3.10849 3.25697 3.36360 3.87465 3.94906 3.99461 4.08236 4.16078 4.34162 4.46844 4.48508 4.57821 4.65780 4.76949 4.80426 4.86564 5.01576 5.07047 5.21855 5.27393 5.30013 5.44958 5.63876 5.92682 6.04993 6.32514 6.53583 6.67218 6.85238 7.39712 8.88032 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.007617 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.446636 B = 3675.171655 C = 5176.350297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.212 3.788 10 N -0.559 5.559 11 C 0.107 3.893 12 C -0.153 4.153 13 C -0.169 4.169 14 C -0.169 4.169 15 C 0.287 3.713 16 N -0.593 5.593 17 C 0.088 3.912 18 C -0.075 4.075 19 S -0.216 6.216 20 C 0.544 3.456 21 O -0.523 6.523 22 H 0.265 0.735 23 H 0.020 0.980 24 H -0.028 1.028 25 H 0.066 0.934 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.154 0.846 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 -11.391 -1.950 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.561 4.561 8 H 0.069 0.931 9 C 0.087 3.913 10 N -0.285 5.285 11 C -0.021 4.021 12 C -0.172 4.172 13 C -0.206 4.206 14 C -0.207 4.207 15 C 0.072 3.928 16 N -0.329 5.329 17 C -0.036 4.036 18 C -0.223 4.223 19 S 0.009 5.991 20 C 0.223 3.777 21 O -0.403 6.403 22 H 0.074 0.926 23 H 0.038 0.962 24 H -0.010 1.010 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.172 0.828 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.311 -11.740 -3.111 12.150 hybrid contribution -0.696 1.488 1.499 2.224 sum -1.007 -10.253 -1.612 10.427 Atomic orbital electron populations 1.70016 1.07083 1.27765 1.51612 1.25671 0.95688 1.02315 0.94925 0.85583 0.78678 0.79334 0.78250 1.20296 1.20442 1.19585 1.21390 0.93210 0.91461 1.50085 0.93111 1.19467 0.89743 0.87909 0.94227 1.61612 1.27830 1.03217 1.35879 1.21392 0.92123 0.99634 0.88959 1.22144 0.98060 1.00548 0.96483 1.23018 1.03171 0.91396 1.03035 1.22994 0.97268 1.01738 0.98662 1.21910 0.98690 0.92840 0.79396 1.48080 1.13132 1.61587 1.10061 1.21699 0.85740 1.03599 0.92564 1.24375 0.93746 1.07548 0.96638 1.87190 1.18699 1.81476 1.11735 1.21915 0.86118 0.79467 0.90221 1.90778 1.21839 1.53985 1.73656 0.92644 0.96246 1.01000 0.91551 0.94404 0.90120 0.88051 0.89014 0.88216 0.88047 0.90890 0.89114 0.86256 0.90436 0.82787 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.37 13.29 21.45 0.28 -52.08 16 2 C 0.01 0.71 5.46 84.65 0.46 1.17 16 3 Si 0.96 43.72 29.54 68.60 2.03 45.74 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.52 -28.82 8.22 25.60 0.21 -28.61 16 8 H 0.05 2.88 7.32 -2.91 -0.02 2.86 16 9 C 0.21 10.45 4.56 85.56 0.39 10.84 16 10 N -0.56 -23.59 4.52 -913.17 -4.13 -27.72 16 11 C 0.11 4.14 5.01 86.31 0.43 4.57 16 12 C -0.15 -5.35 5.26 -10.79 -0.06 -5.41 16 13 C -0.17 -4.70 9.92 30.59 0.30 -4.40 16 14 C -0.17 -4.70 10.25 30.59 0.31 -4.39 16 15 C 0.29 9.88 5.10 170.80 0.87 10.75 16 16 N -0.59 -19.22 3.02 -851.47 -2.57 -21.79 16 17 C 0.09 2.13 6.63 86.89 0.58 2.70 16 18 C -0.07 -1.42 7.42 72.12 0.54 -0.88 16 19 S -0.22 -6.17 23.25 -56.49 -1.31 -7.48 16 20 C 0.54 19.73 8.27 130.07 1.08 20.80 16 21 O -0.52 -22.45 17.41 -4.08 -0.07 -22.52 16 22 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 23 H 0.02 1.00 6.05 -2.39 -0.01 0.98 16 24 H -0.03 -1.45 8.12 -2.39 -0.02 -1.47 16 25 H 0.07 2.90 6.58 -2.39 -0.02 2.89 16 26 H 0.04 1.33 7.73 -2.38 -0.02 1.31 16 27 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 28 H 0.10 2.51 8.04 -2.39 -0.02 2.49 16 29 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.10 2.54 8.14 -2.39 -0.02 2.53 16 31 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.07 2.26 7.75 -2.39 -0.02 2.25 16 33 H 0.09 3.06 6.77 -2.39 -0.02 3.04 16 34 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.08 2.28 6.29 -2.39 -0.02 2.26 16 36 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -67.17 318.39 0.40 -66.77 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 1.06 Total: 11.93 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 5.11 Total: 7.15 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -6.41 Total: -101.59 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.07 Total: -22.52 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -6.17 SS G_CDS: -1.31 Total: -7.48 kcal Total: -67.17 0.40 -66.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103459489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.739 kcal (2) G-P(sol) polarization free energy of solvation -67.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds