Wall clock time and date at job start Mon Mar 30 2020 01:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21335 * 119.99795 * 2 1 4 4 C 1.46505 * 119.99998 * 180.02562 * 2 1 3 5 5 C 1.41048 * 119.85163 * 0.02562 * 4 2 1 6 6 C 1.35445 * 120.89373 * 180.02562 * 5 4 2 7 7 C 1.40965 * 120.28458 * 359.95133 * 6 5 4 8 8 C 1.40393 * 120.92958 * 180.02562 * 7 6 5 9 9 C 1.36235 * 119.73824 * 180.02562 * 8 7 6 10 10 C 1.39267 * 120.96410 * 0.02562 * 9 8 7 11 11 C 1.36224 * 120.89693 * 359.70899 * 10 9 8 12 12 C 1.40422 * 119.68126 * 0.56669 * 11 10 9 13 13 C 1.39656 * 119.85223 * 179.97438 * 4 2 1 14 14 O 1.35365 * 120.37692 * 0.02562 * 13 4 2 15 15 C 1.42899 * 116.99757 * 269.97736 * 14 13 4 16 16 C 1.50704 * 109.47052 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99405 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00060 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99767 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99784 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47307 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47210 * 119.99734 * 20 18 16 23 23 H 1.48506 * 109.46962 * 239.99674 * 20 18 16 24 24 H 1.09000 * 109.46400 * 239.99863 * 1 2 3 25 25 H 1.08997 * 109.47027 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47157 * 120.00049 * 1 2 3 27 27 H 1.07995 * 119.54975 * 359.97438 * 5 4 2 28 28 H 1.08002 * 119.86062 * 179.97438 * 6 5 4 29 29 H 1.07997 * 120.13624 * 0.02609 * 8 7 6 30 30 H 1.07991 * 119.51887 * 179.97438 * 9 8 7 31 31 H 1.07994 * 119.54795 * 179.97438 * 10 9 8 32 32 H 1.07995 * 120.15296 * 180.30380 * 11 10 9 33 33 H 1.09000 * 109.47269 * 299.99543 * 15 14 13 34 34 H 1.09001 * 109.47442 * 59.99867 * 15 14 13 35 35 H 0.97007 * 119.99613 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2396 -1.2688 -0.0006 5 6 1.5312 -2.4884 -0.0017 6 6 2.1870 -3.6736 -0.0017 7 6 3.5963 -3.7062 -0.0016 8 6 4.2898 -4.9269 -0.0022 9 6 5.6521 -4.9301 -0.0016 10 6 6.3715 -3.7376 0.0001 11 6 5.7319 -2.5348 -0.0048 12 6 4.3283 -2.4937 0.0005 13 6 3.6362 -1.2652 -0.0011 14 8 4.3177 -0.0956 -0.0006 15 6 4.6442 0.4655 -1.2736 16 6 5.3959 1.7566 -1.0756 17 1 5.6030 2.1131 -0.0774 18 6 5.8181 2.4831 -2.1687 19 7 5.5653 2.0491 -3.3842 20 14 6.7491 4.0838 -1.9233 21 1 6.9031 4.3491 -0.4703 22 1 8.0901 3.9780 -2.5524 23 1 5.9938 5.1972 -2.5520 24 1 -0.3632 -0.5139 0.8900 25 1 -0.3633 1.0276 0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 0.4513 -2.4772 -0.0017 28 1 1.6278 -4.5975 -0.0021 29 1 3.7455 -5.8597 -0.0031 30 1 6.1820 -5.8711 -0.0016 31 1 7.4510 -3.7668 0.0009 32 1 6.3017 -1.6174 -0.0083 33 1 5.2658 -0.2353 -1.8310 34 1 3.7278 0.6608 -1.8305 35 1 5.8627 2.5601 -4.1532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121601736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:04 Heat of formation + Delta-G solvation = -34.880756 kcal Electronic energy + Delta-G solvation = -20052.061921 eV Core-core repulsion = 16980.291383 eV Total energy + Delta-G solvation = -3071.770538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45308 -38.61918 -37.14463 -35.73515 -32.86713 -31.66225 -31.09294 -29.05378 -28.77611 -27.17012 -23.81633 -23.07088 -22.63310 -21.09339 -19.90471 -17.41025 -17.10896 -16.50254 -16.34592 -15.53403 -14.93396 -14.70712 -14.43639 -14.21163 -13.92378 -13.71913 -13.59399 -12.93776 -12.89387 -12.67506 -12.31572 -11.88799 -11.84110 -11.68992 -11.20064 -11.00428 -10.89334 -10.88550 -10.67430 -10.21562 -9.45298 -9.35524 -9.16831 -8.93852 -8.47476 -8.31871 -7.49420 -6.12608 -4.13678 0.58749 0.99935 2.10548 2.58210 3.29876 3.36043 3.42199 3.45407 4.16356 4.38398 4.43723 4.69114 4.81581 4.98615 5.13903 5.22922 5.24610 5.29470 5.44198 5.48761 5.53446 5.59582 5.68521 5.83199 6.05305 6.11734 6.26717 6.31576 6.38431 6.53236 6.66755 6.80697 6.88625 7.04392 7.13083 7.35503 7.79829 8.08119 8.16264 8.60006 8.98970 9.49634 10.98993 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.016345 B = 0.006745 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.616428 B = 4150.201378 C = 5549.841189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.373 3.627 3 O -0.414 6.414 4 C -0.224 4.224 5 C -0.058 4.058 6 C -0.150 4.150 7 C -0.014 4.014 8 C -0.129 4.129 9 C -0.098 4.098 10 C -0.140 4.140 11 C -0.065 4.065 12 C -0.097 4.097 13 C 0.219 3.781 14 O -0.331 6.331 15 C 0.220 3.780 16 C -0.508 4.508 17 H 0.070 0.930 18 C 0.058 3.942 19 N -0.898 5.898 20 Si 0.911 3.089 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.009 0.991 34 H 0.015 0.985 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 -14.115 5.866 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.249 3.751 3 O -0.286 6.286 4 C -0.225 4.225 5 C -0.077 4.077 6 C -0.168 4.168 7 C -0.014 4.014 8 C -0.147 4.147 9 C -0.116 4.116 10 C -0.158 4.158 11 C -0.083 4.083 12 C -0.098 4.098 13 C 0.172 3.828 14 O -0.248 6.248 15 C 0.149 3.851 16 C -0.546 4.546 17 H 0.088 0.912 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.738 3.262 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.157 0.843 33 H 0.027 0.973 34 H 0.033 0.967 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.325 -13.357 5.814 15.881 hybrid contribution 0.318 0.537 -0.259 0.675 sum -6.007 -12.820 5.555 15.208 Atomic orbital electron populations 1.22206 0.94710 1.04541 1.03619 1.22107 0.91093 0.87993 0.73941 1.90758 1.71421 1.33393 1.33071 1.20856 0.93669 0.95693 1.12291 1.20799 0.99618 0.90981 0.96271 1.20722 0.92698 0.98087 1.05316 1.18078 0.93525 0.92394 0.97393 1.20931 0.94492 0.96549 1.02753 1.20904 0.94296 0.98108 0.98326 1.20844 1.00187 0.92221 1.02520 1.21268 0.93149 0.99175 0.94718 1.18527 0.94360 0.92474 1.04424 1.19401 0.89267 0.86719 0.87459 1.85809 1.72721 1.32043 1.34190 1.20483 0.95063 0.92929 0.76613 1.20983 1.34882 1.04899 0.93835 0.91218 1.24912 0.96350 0.98440 0.94650 1.69977 1.46671 1.39291 0.97799 0.86235 0.79066 0.82403 0.78538 1.19393 1.20826 1.20762 0.89623 0.90097 0.89534 0.85349 0.85532 0.85652 0.86136 0.85853 0.84287 0.97310 0.96705 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 8.89 36.01 0.32 -2.11 16 2 C 0.37 7.00 7.20 -30.97 -0.22 6.77 16 3 O -0.41 -9.98 14.66 -16.65 -0.24 -10.22 16 4 C -0.22 -4.11 5.88 -104.97 -0.62 -4.72 16 5 C -0.06 -0.81 9.36 -39.51 -0.37 -1.18 16 6 C -0.15 -1.98 9.71 -39.55 -0.38 -2.36 16 7 C -0.01 -0.21 5.75 -106.76 -0.61 -0.82 16 8 C -0.13 -1.64 9.75 -39.49 -0.39 -2.02 16 9 C -0.10 -1.21 9.95 -39.92 -0.40 -1.61 16 10 C -0.14 -1.99 9.95 -39.92 -0.40 -2.39 16 11 C -0.07 -1.16 9.56 -39.48 -0.38 -1.54 16 12 C -0.10 -1.82 5.75 -106.73 -0.61 -2.43 16 13 C 0.22 4.66 5.75 -38.00 -0.22 4.44 16 14 O -0.33 -8.42 7.64 -39.95 -0.31 -8.72 16 15 C 0.22 6.20 5.15 36.01 0.19 6.38 16 16 C -0.51 -15.24 9.43 -34.44 -0.32 -15.57 16 17 H 0.07 2.10 7.81 -52.49 -0.41 1.69 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 20 Si 0.91 22.31 29.54 -169.99 -5.02 17.29 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 25 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 26 H 0.09 0.90 8.06 -51.93 -0.42 0.49 16 27 H 0.13 1.28 6.96 -52.49 -0.37 0.92 16 28 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.14 2.68 7.61 -52.49 -0.40 2.28 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.02 0.46 7.48 -51.93 -0.39 0.07 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 306.79 15.07 4.62 4.62 Total: -1.00 -34.43 306.79 -8.80 -43.22 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.07 Total: -2.13 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -4.51 Total: -17.58 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.55 Total: -18.94 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.43 -8.80 -43.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121601736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.340 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds