Wall clock time and date at job start Mon Mar 30 2020 01:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21335 * 119.99795 * 2 1 4 4 C 1.46505 * 119.99998 * 180.02562 * 2 1 3 5 5 C 1.41048 * 119.85163 * 0.02562 * 4 2 1 6 6 C 1.35445 * 120.89373 * 180.02562 * 5 4 2 7 7 C 1.40965 * 120.28458 * 359.95133 * 6 5 4 8 8 C 1.40393 * 120.92958 * 180.02562 * 7 6 5 9 9 C 1.36235 * 119.73824 * 180.02562 * 8 7 6 10 10 C 1.39267 * 120.96410 * 0.02562 * 9 8 7 11 11 C 1.36224 * 120.89693 * 359.70899 * 10 9 8 12 12 C 1.40422 * 119.68126 * 0.56669 * 11 10 9 13 13 C 1.39656 * 119.85223 * 179.97438 * 4 2 1 14 14 O 1.35365 * 120.37692 * 0.02562 * 13 4 2 15 15 C 1.42899 * 116.99757 * 269.97736 * 14 13 4 16 16 C 1.50704 * 109.47052 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99405 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00060 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99767 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99784 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47307 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47210 * 119.99734 * 20 18 16 23 23 H 1.48506 * 109.46962 * 239.99674 * 20 18 16 24 24 H 1.09000 * 109.46400 * 239.99863 * 1 2 3 25 25 H 1.08997 * 109.47027 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47157 * 120.00049 * 1 2 3 27 27 H 1.07995 * 119.54975 * 359.97438 * 5 4 2 28 28 H 1.08002 * 119.86062 * 179.97438 * 6 5 4 29 29 H 1.07997 * 120.13624 * 0.02609 * 8 7 6 30 30 H 1.07991 * 119.51887 * 179.97438 * 9 8 7 31 31 H 1.07994 * 119.54795 * 179.97438 * 10 9 8 32 32 H 1.07995 * 120.15296 * 180.30380 * 11 10 9 33 33 H 1.09000 * 109.47269 * 299.99543 * 15 14 13 34 34 H 1.09001 * 109.47442 * 59.99867 * 15 14 13 35 35 H 0.97007 * 119.99613 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2396 -1.2688 -0.0006 5 6 1.5312 -2.4884 -0.0017 6 6 2.1870 -3.6736 -0.0017 7 6 3.5963 -3.7062 -0.0016 8 6 4.2898 -4.9269 -0.0022 9 6 5.6521 -4.9301 -0.0016 10 6 6.3715 -3.7376 0.0001 11 6 5.7319 -2.5348 -0.0048 12 6 4.3283 -2.4937 0.0005 13 6 3.6362 -1.2652 -0.0011 14 8 4.3177 -0.0956 -0.0006 15 6 4.6442 0.4655 -1.2736 16 6 5.3959 1.7566 -1.0756 17 1 5.6030 2.1131 -0.0774 18 6 5.8181 2.4831 -2.1687 19 7 5.5653 2.0491 -3.3842 20 14 6.7491 4.0838 -1.9233 21 1 6.9031 4.3491 -0.4703 22 1 8.0901 3.9780 -2.5524 23 1 5.9938 5.1972 -2.5520 24 1 -0.3632 -0.5139 0.8900 25 1 -0.3633 1.0276 0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 0.4513 -2.4772 -0.0017 28 1 1.6278 -4.5975 -0.0021 29 1 3.7455 -5.8597 -0.0031 30 1 6.1820 -5.8711 -0.0016 31 1 7.4510 -3.7668 0.0009 32 1 6.3017 -1.6174 -0.0083 33 1 5.2658 -0.2353 -1.8310 34 1 3.7278 0.6608 -1.8305 35 1 5.8627 2.5601 -4.1532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121601736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:03 Heat of formation + Delta-G solvation = -55.971059 kcal Electronic energy + Delta-G solvation = -20052.976465 eV Core-core repulsion = 16980.291383 eV Total energy + Delta-G solvation = -3072.685082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.78213 -40.03345 -38.85081 -36.98584 -35.10119 -32.98005 -32.34667 -30.37949 -30.13175 -29.08461 -25.28401 -24.74959 -24.07372 -22.46500 -21.18330 -19.03112 -18.57183 -18.41014 -17.72813 -17.09463 -16.52089 -16.15488 -16.02766 -15.55718 -15.44660 -15.34960 -14.82170 -14.40771 -14.33059 -13.99613 -13.81200 -13.44045 -13.08794 -12.95655 -12.87354 -12.83608 -12.34031 -12.31834 -12.06560 -11.96369 -11.42984 -11.21891 -10.73430 -10.64387 -10.38675 -9.66722 -8.75223 -8.41000 -6.53825 -0.74449 -0.16727 0.82011 1.31497 1.34686 1.35283 1.49598 2.16595 2.29096 2.88386 2.92075 3.16885 3.25375 3.72419 3.88684 3.99839 4.11916 4.18714 4.33649 4.37997 4.44445 4.49985 4.67337 4.69871 4.72718 4.90389 5.00478 5.05249 5.07839 5.20572 5.28239 5.36563 5.46052 5.53323 5.63472 5.78361 5.84206 6.02212 6.49885 6.75282 6.85742 7.17665 8.72023 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.016345 B = 0.006745 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.616428 B = 4150.201378 C = 5549.841189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.362 3.638 3 O -0.488 6.488 4 C -0.227 4.227 5 C -0.065 4.065 6 C -0.120 4.120 7 C -0.034 4.034 8 C -0.110 4.110 9 C -0.100 4.100 10 C -0.122 4.122 11 C -0.119 4.119 12 C -0.117 4.117 13 C 0.141 3.859 14 O -0.350 6.350 15 C 0.249 3.751 16 C -0.543 4.543 17 H 0.056 0.944 18 C 0.008 3.992 19 N -0.930 5.930 20 Si 0.988 3.012 21 H -0.267 1.267 22 H -0.262 1.262 23 H -0.269 1.269 24 H 0.126 0.874 25 H 0.076 0.924 26 H 0.118 0.882 27 H 0.179 0.821 28 H 0.184 0.816 29 H 0.176 0.824 30 H 0.166 0.834 31 H 0.143 0.857 32 H 0.097 0.903 33 H -0.017 1.017 34 H -0.022 1.022 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.532 -17.716 6.201 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.242 3.758 3 O -0.366 6.366 4 C -0.228 4.228 5 C -0.082 4.082 6 C -0.137 4.137 7 C -0.034 4.034 8 C -0.127 4.127 9 C -0.118 4.118 10 C -0.140 4.140 11 C -0.137 4.137 12 C -0.117 4.117 13 C 0.096 3.904 14 O -0.268 6.268 15 C 0.178 3.822 16 C -0.581 4.581 17 H 0.074 0.926 18 C -0.190 4.190 19 N -0.569 5.569 20 Si 0.809 3.191 21 H -0.191 1.191 22 H -0.187 1.187 23 H -0.194 1.194 24 H 0.144 0.856 25 H 0.095 0.905 26 H 0.136 0.864 27 H 0.197 0.803 28 H 0.201 0.799 29 H 0.194 0.806 30 H 0.184 0.816 31 H 0.161 0.839 32 H 0.115 0.885 33 H 0.000 1.000 34 H -0.004 1.004 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.134 -17.006 6.159 19.832 hybrid contribution 0.813 1.382 -0.342 1.639 sum -7.322 -15.625 5.817 18.209 Atomic orbital electron populations 1.22215 0.89144 1.05537 1.06796 1.23292 0.94207 0.87112 0.71198 1.90732 1.73483 1.35680 1.36659 1.21322 0.92770 0.97946 1.10778 1.21254 1.01835 0.89036 0.96105 1.21399 0.91713 0.99935 1.00677 1.18561 0.95061 0.91976 0.97820 1.21514 0.94792 0.96985 0.99421 1.21390 0.94727 0.98576 0.97060 1.21189 1.01453 0.91804 0.99585 1.21107 0.93492 0.99329 0.99776 1.18721 0.94808 0.93080 1.05106 1.19991 0.91017 0.86197 0.93240 1.85764 1.73854 1.34678 1.32454 1.19773 0.92401 0.92071 0.77996 1.21255 1.36583 1.06428 0.93793 0.92553 1.25989 0.96728 1.02374 0.93943 1.70085 1.47083 1.40953 0.98753 0.85083 0.78173 0.77069 0.78728 1.19125 1.18709 1.19391 0.85620 0.90474 0.86422 0.80327 0.79906 0.80623 0.81609 0.83947 0.88499 0.99976 1.00395 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.18 8.89 71.24 0.63 -3.54 16 2 C 0.36 14.21 7.20 27.85 0.20 14.41 16 3 O -0.49 -25.85 14.66 17.99 0.26 -25.59 16 4 C -0.23 -8.61 5.88 -20.09 -0.12 -8.73 16 5 C -0.06 -1.58 9.36 22.31 0.21 -1.37 16 6 C -0.12 -2.59 9.71 22.29 0.22 -2.37 16 7 C -0.03 -0.97 5.75 -21.25 -0.12 -1.09 16 8 C -0.11 -2.24 9.75 22.33 0.22 -2.02 16 9 C -0.10 -2.09 9.95 22.05 0.22 -1.87 16 10 C -0.12 -3.49 9.95 22.05 0.22 -3.27 16 11 C -0.12 -4.66 9.56 22.33 0.21 -4.45 16 12 C -0.12 -4.64 5.75 -21.23 -0.12 -4.76 16 13 C 0.14 6.59 5.75 23.29 0.13 6.72 16 14 O -0.35 -20.17 7.64 -65.37 -0.50 -20.67 16 15 C 0.25 15.79 5.15 71.24 0.37 16.16 16 16 C -0.54 -35.64 9.43 25.60 0.24 -35.40 16 17 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 18 C 0.01 0.50 5.46 84.66 0.46 0.96 16 19 N -0.93 -59.30 13.29 21.45 0.28 -59.02 16 20 Si 0.99 47.61 29.54 68.60 2.03 49.64 16 21 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H 0.13 1.94 8.07 -2.39 -0.02 1.92 16 25 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 26 H 0.12 2.04 8.06 -2.39 -0.02 2.02 16 27 H 0.18 2.48 6.96 -2.91 -0.02 2.46 16 28 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 29 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 30 H 0.17 2.03 8.06 -2.92 -0.02 2.01 16 31 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.10 4.44 7.61 -2.91 -0.02 4.42 16 33 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 34 H -0.02 -1.48 7.48 -2.39 -0.02 -1.50 16 35 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 Total: -1.00 -89.09 306.79 6.14 -82.95 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.10 Total: 3.32 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 2.97 Total: -30.62 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.28 Total: -59.02 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -0.24 Total: -46.26 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -89.09 6.14 -82.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121601736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.975 kcal (2) G-P(sol) polarization free energy of solvation -89.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds