Wall clock time and date at job start Mon Mar 30 2020 01:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99300 * 2 1 4 4 H 1.48499 * 109.47015 * 269.99630 * 3 2 1 5 5 H 1.48495 * 109.47560 * 30.00116 * 3 2 1 6 6 H 1.48501 * 109.46963 * 150.00036 * 3 2 1 7 7 C 1.37872 * 120.00535 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99879 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99852 * 359.72316 * 7 2 1 10 10 O 1.42905 * 109.46896 * 179.97438 * 9 7 2 11 11 C 1.35901 * 116.99358 * 180.02562 * 10 9 7 12 12 C 1.38800 * 120.03047 * 0.02562 * 11 10 9 13 13 C 1.38161 * 120.05793 * 179.97438 * 12 11 10 14 14 C 1.38187 * 120.11382 * 359.97438 * 13 12 11 15 15 C 1.38784 * 120.05288 * 359.97438 * 14 13 12 16 16 O 1.35879 * 120.02808 * 180.02562 * 15 14 13 17 17 C 1.35882 * 118.00030 * 247.44967 * 16 15 14 18 18 C 1.38759 * 120.05944 * 5.84251 * 17 16 15 19 19 C 1.38138 * 119.93824 * 179.74508 * 18 17 16 20 20 C 1.38265 * 120.06243 * 0.53254 * 19 18 17 21 21 C 1.38277 * 120.11518 * 359.74097 * 20 19 18 22 22 C 1.38138 * 120.05889 * 359.97438 * 21 20 19 23 23 C 1.38606 * 120.01925 * 179.72667 * 11 10 9 24 24 H 0.96994 * 120.00355 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47410 * 300.00327 * 9 7 2 26 26 H 1.08999 * 109.46971 * 60.00335 * 9 7 2 27 27 H 1.07994 * 119.96968 * 359.97438 * 12 11 10 28 28 H 1.07994 * 119.94137 * 179.97438 * 13 12 11 29 29 H 1.07995 * 119.97821 * 180.02562 * 14 13 12 30 30 H 1.07994 * 120.02598 * 359.97438 * 18 17 16 31 31 H 1.08007 * 119.96521 * 180.27865 * 19 18 17 32 32 H 1.07995 * 119.94478 * 179.72727 * 20 19 18 33 33 H 1.08000 * 119.97092 * 180.02562 * 21 20 19 34 34 H 1.07997 * 120.03018 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.05882 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0074 10 8 2.1800 -3.5852 0.0060 11 6 1.6605 -4.8410 0.0112 12 6 0.2846 -5.0236 0.0169 13 6 -0.2441 -6.3000 0.0216 14 6 0.5950 -7.3980 0.0201 15 6 1.9714 -7.2208 0.0133 16 8 2.7960 -8.3008 0.0113 17 6 3.5541 -8.5267 1.1162 18 6 3.3855 -7.7409 2.2473 19 6 4.1538 -7.9761 3.3709 20 6 5.0977 -8.9864 3.3655 21 6 5.2716 -9.7674 2.2377 22 6 4.5019 -9.5402 1.1134 23 6 2.5044 -5.9405 0.0045 24 1 -0.4850 0.8400 -0.0004 25 1 0.6282 -2.5544 0.9001 26 1 0.6209 -2.5594 -0.8798 27 1 -0.3733 -4.1671 0.0177 28 1 -1.3149 -6.4399 0.0265 29 1 0.1794 -8.3948 0.0234 30 1 2.6518 -6.9485 2.2503 31 1 4.0198 -7.3676 4.2531 32 1 5.7004 -9.1658 4.2435 33 1 6.0093 -10.5562 2.2362 34 1 4.6379 -10.1507 0.2329 35 1 3.5753 -5.8005 -0.0053 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121602423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:03 Heat of formation + Delta-G solvation = -21.164909 kcal Electronic energy + Delta-G solvation = -19143.412433 eV Core-core repulsion = 16072.236658 eV Total energy + Delta-G solvation = -3071.175774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85040 -39.15333 -37.84947 -36.10697 -32.98837 -31.21776 -30.48000 -30.24281 -28.90152 -27.51507 -23.91208 -22.85599 -22.77107 -22.11041 -20.84485 -18.61299 -17.42023 -16.70689 -15.99446 -15.95568 -15.73178 -15.59149 -14.76443 -14.63551 -14.44236 -14.05205 -13.63975 -13.53503 -13.33444 -12.84069 -12.18980 -12.08497 -11.79305 -11.67491 -11.38283 -11.13680 -11.03659 -10.95758 -10.71578 -10.26159 -10.23134 -9.35639 -9.08323 -8.76149 -8.64506 -8.18448 -7.69374 -6.30474 -4.34534 1.20722 1.26981 1.45326 1.71921 3.18634 3.21108 3.26549 3.31393 3.70941 3.97992 4.13233 4.45089 4.79261 4.84773 5.06527 5.07024 5.10828 5.28799 5.32748 5.33500 5.49650 5.52542 5.69812 5.82021 5.92239 6.06581 6.24724 6.33719 6.44807 6.45452 6.58813 6.66285 6.72868 6.85415 6.97398 7.05671 7.60993 7.66674 7.87876 8.35016 8.77170 9.31060 10.80726 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.024391 B = 0.003902 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.697929 B = 7173.959391 C = 7941.618061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.914 3.086 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.071 0.929 9 C 0.192 3.808 10 O -0.313 6.313 11 C 0.170 3.830 12 C -0.211 4.211 13 C -0.064 4.064 14 C -0.179 4.179 15 C 0.116 3.884 16 O -0.257 6.257 17 C 0.125 3.875 18 C -0.189 4.189 19 C -0.082 4.082 20 C -0.158 4.158 21 C -0.088 4.088 22 C -0.150 4.150 23 C -0.191 4.191 24 H 0.268 0.732 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.139 0.861 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.378 -17.274 4.158 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.740 3.260 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.564 4.564 8 H 0.089 0.911 9 C 0.119 3.881 10 O -0.225 6.225 11 C 0.121 3.879 12 C -0.229 4.229 13 C -0.082 4.082 14 C -0.197 4.197 15 C 0.074 3.926 16 O -0.169 6.169 17 C 0.082 3.918 18 C -0.208 4.208 19 C -0.100 4.100 20 C -0.176 4.176 21 C -0.106 4.106 22 C -0.169 4.169 23 C -0.210 4.210 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.157 0.843 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.421 -17.167 3.990 18.171 hybrid contribution 0.022 1.126 0.018 1.127 sum 4.444 -16.041 4.008 17.121 Atomic orbital electron populations 1.69938 1.06141 1.27725 1.49414 1.24930 0.95058 0.99568 0.94561 0.86234 0.79634 0.81645 0.78447 1.20227 1.20857 1.19454 1.20964 0.94319 0.88651 1.52455 0.91084 1.20716 0.88646 0.81661 0.97039 1.86150 1.39206 1.11590 1.85578 1.18970 0.91220 0.86413 0.91305 1.21606 0.94794 0.98834 1.07712 1.20773 0.99450 0.91278 0.96731 1.20831 0.91196 0.99613 1.08100 1.18232 0.88713 0.84448 1.01202 1.84339 1.52359 1.43959 1.36204 1.19208 0.91672 0.95315 0.85580 1.21486 1.03517 1.02170 0.93594 1.21008 0.94607 0.96838 0.97561 1.21083 1.00222 0.97460 0.98821 1.20926 0.98271 0.98999 0.92360 1.20423 0.96909 0.99371 1.00149 1.20571 1.00503 0.89907 1.09990 0.92253 0.95884 0.95849 0.84275 0.85310 0.85622 0.84865 0.85653 0.85972 0.85427 0.85187 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -14.84 9.43 -34.44 -0.32 -15.16 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.19 5.00 4.49 36.01 0.16 5.16 16 10 O -0.31 -7.49 10.12 -19.43 -0.20 -7.69 16 11 C 0.17 3.42 6.68 -39.24 -0.26 3.16 16 12 C -0.21 -3.83 9.04 -39.40 -0.36 -4.19 16 13 C -0.06 -0.96 10.04 -39.63 -0.40 -1.36 16 14 C -0.18 -2.63 9.98 -39.40 -0.39 -3.03 16 15 C 0.12 1.88 4.72 -39.21 -0.19 1.70 16 16 O -0.26 -3.99 10.00 -3.50 -0.03 -4.03 16 17 C 0.13 1.78 6.54 -39.19 -0.26 1.52 16 18 C -0.19 -2.64 8.80 -39.43 -0.35 -2.99 16 19 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 20 C -0.16 -1.62 10.04 -39.56 -0.40 -2.02 16 21 C -0.09 -0.88 10.04 -39.60 -0.40 -1.28 16 22 C -0.15 -1.77 9.99 -39.42 -0.39 -2.17 16 23 C -0.19 -3.43 8.30 -39.28 -0.33 -3.76 16 24 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.02 0.62 7.66 -51.93 -0.40 0.22 16 26 H 0.02 0.63 7.66 -51.93 -0.40 0.23 16 27 H 0.14 2.63 6.29 -52.49 -0.33 2.30 16 28 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.13 2.00 6.19 -52.49 -0.32 1.67 16 31 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.13 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 308.18 15.07 4.64 4.64 Total: -1.00 -29.61 308.18 -8.20 -37.81 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -3.96 Total: 2.17 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -4.37 Total: -24.18 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.74 Total: -24.74 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.23 Total: -11.71 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.61 -8.20 -37.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121602423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.641 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds