Wall clock time and date at job start Mon Mar 30 2020 01:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99300 * 2 1 4 4 H 1.48499 * 109.47015 * 269.99630 * 3 2 1 5 5 H 1.48495 * 109.47560 * 30.00116 * 3 2 1 6 6 H 1.48501 * 109.46963 * 150.00036 * 3 2 1 7 7 C 1.37872 * 120.00535 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99879 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99852 * 359.72316 * 7 2 1 10 10 O 1.42905 * 109.46896 * 179.97438 * 9 7 2 11 11 C 1.35901 * 116.99358 * 180.02562 * 10 9 7 12 12 C 1.38800 * 120.03047 * 0.02562 * 11 10 9 13 13 C 1.38161 * 120.05793 * 179.97438 * 12 11 10 14 14 C 1.38187 * 120.11382 * 359.97438 * 13 12 11 15 15 C 1.38784 * 120.05288 * 359.97438 * 14 13 12 16 16 O 1.35879 * 120.02808 * 180.02562 * 15 14 13 17 17 C 1.35882 * 118.00030 * 247.44967 * 16 15 14 18 18 C 1.38759 * 120.05944 * 5.84251 * 17 16 15 19 19 C 1.38138 * 119.93824 * 179.74508 * 18 17 16 20 20 C 1.38265 * 120.06243 * 0.53254 * 19 18 17 21 21 C 1.38277 * 120.11518 * 359.74097 * 20 19 18 22 22 C 1.38138 * 120.05889 * 359.97438 * 21 20 19 23 23 C 1.38606 * 120.01925 * 179.72667 * 11 10 9 24 24 H 0.96994 * 120.00355 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47410 * 300.00327 * 9 7 2 26 26 H 1.08999 * 109.46971 * 60.00335 * 9 7 2 27 27 H 1.07994 * 119.96968 * 359.97438 * 12 11 10 28 28 H 1.07994 * 119.94137 * 179.97438 * 13 12 11 29 29 H 1.07995 * 119.97821 * 180.02562 * 14 13 12 30 30 H 1.07994 * 120.02598 * 359.97438 * 18 17 16 31 31 H 1.08007 * 119.96521 * 180.27865 * 19 18 17 32 32 H 1.07995 * 119.94478 * 179.72727 * 20 19 18 33 33 H 1.08000 * 119.97092 * 180.02562 * 21 20 19 34 34 H 1.07997 * 120.03018 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.05882 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0074 10 8 2.1800 -3.5852 0.0060 11 6 1.6605 -4.8410 0.0112 12 6 0.2846 -5.0236 0.0169 13 6 -0.2441 -6.3000 0.0216 14 6 0.5950 -7.3980 0.0201 15 6 1.9714 -7.2208 0.0133 16 8 2.7960 -8.3008 0.0113 17 6 3.5541 -8.5267 1.1162 18 6 3.3855 -7.7409 2.2473 19 6 4.1538 -7.9761 3.3709 20 6 5.0977 -8.9864 3.3655 21 6 5.2716 -9.7674 2.2377 22 6 4.5019 -9.5402 1.1134 23 6 2.5044 -5.9405 0.0045 24 1 -0.4850 0.8400 -0.0004 25 1 0.6282 -2.5544 0.9001 26 1 0.6209 -2.5594 -0.8798 27 1 -0.3733 -4.1671 0.0177 28 1 -1.3149 -6.4399 0.0265 29 1 0.1794 -8.3948 0.0234 30 1 2.6518 -6.9485 2.2503 31 1 4.0198 -7.3676 4.2531 32 1 5.7004 -9.1658 4.2435 33 1 6.0093 -10.5562 2.2362 34 1 4.6379 -10.1507 0.2329 35 1 3.5753 -5.8005 -0.0053 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121602423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:03 Heat of formation + Delta-G solvation = -36.731956 kcal Electronic energy + Delta-G solvation = -19144.087471 eV Core-core repulsion = 16072.236658 eV Total energy + Delta-G solvation = -3071.850812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.03577 -40.58761 -39.00409 -37.53132 -35.08943 -32.26655 -31.70660 -31.44970 -30.16372 -29.47658 -25.55978 -24.33973 -23.82662 -23.31174 -22.15709 -19.87790 -19.05270 -18.28758 -17.45316 -17.17940 -17.08476 -16.83882 -16.53857 -16.43930 -15.43556 -15.36814 -14.87408 -14.63098 -14.38331 -14.36097 -13.85236 -13.58744 -13.11279 -13.03481 -12.82600 -12.72899 -12.55630 -12.23593 -12.07944 -12.05307 -11.82594 -11.39751 -10.74651 -10.03156 -9.96574 -9.29493 -9.17768 -8.42171 -6.56504 -0.04379 0.31612 0.37629 0.44365 1.38203 1.40611 1.52519 1.96997 2.25771 2.57866 2.76202 2.83233 2.92802 3.77499 3.86863 3.96420 4.05786 4.07895 4.22359 4.27739 4.37553 4.44364 4.48223 4.57794 4.70804 4.86850 4.93258 5.05582 5.16132 5.26914 5.33427 5.34371 5.44767 5.47366 5.55747 5.56860 5.79246 5.93031 6.42189 6.50902 6.71188 7.15363 8.69913 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.024391 B = 0.003902 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.697929 B = 7173.959391 C = 7941.618061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.986 3.014 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.561 4.561 8 H 0.064 0.936 9 C 0.211 3.789 10 O -0.337 6.337 11 C 0.132 3.868 12 C -0.223 4.223 13 C -0.050 4.050 14 C -0.164 4.164 15 C 0.121 3.879 16 O -0.264 6.264 17 C 0.096 3.904 18 C -0.210 4.210 19 C -0.093 4.093 20 C -0.151 4.151 21 C -0.081 4.081 22 C -0.153 4.153 23 C -0.193 4.193 24 H 0.275 0.725 25 H 0.007 0.993 26 H 0.006 0.994 27 H 0.125 0.875 28 H 0.169 0.831 29 H 0.160 0.840 30 H 0.112 0.888 31 H 0.138 0.862 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.146 0.854 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.180 -19.026 4.827 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.808 3.192 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.189 1.189 7 C -0.598 4.598 8 H 0.082 0.918 9 C 0.138 3.862 10 O -0.250 6.250 11 C 0.085 3.915 12 C -0.242 4.242 13 C -0.067 4.067 14 C -0.182 4.182 15 C 0.079 3.921 16 O -0.176 6.176 17 C 0.054 3.946 18 C -0.228 4.228 19 C -0.111 4.111 20 C -0.169 4.169 21 C -0.099 4.099 22 C -0.172 4.172 23 C -0.213 4.213 24 H 0.084 0.916 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.142 0.858 28 H 0.186 0.814 29 H 0.178 0.822 30 H 0.130 0.870 31 H 0.156 0.844 32 H 0.171 0.829 33 H 0.182 0.818 34 H 0.164 0.836 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.222 -18.955 4.662 20.206 hybrid contribution -0.189 1.433 -0.129 1.451 sum 5.033 -17.522 4.534 18.786 Atomic orbital electron populations 1.70033 1.07632 1.29133 1.49302 1.25916 0.96027 1.03215 0.93359 0.85135 0.78345 0.76702 0.78980 1.19165 1.19553 1.18931 1.21304 0.94332 0.90238 1.53943 0.91754 1.20263 0.88368 0.82263 0.95343 1.86063 1.39081 1.12763 1.87140 1.19263 0.92662 0.85297 0.94251 1.21615 0.93708 1.00093 1.08760 1.21147 1.01470 0.89591 0.94525 1.21240 0.90361 1.01084 1.05511 1.18340 0.89671 0.83973 1.00132 1.84299 1.52795 1.43260 1.37244 1.19504 0.92984 0.96891 0.85247 1.21454 1.04284 1.02284 0.94820 1.21272 0.94801 0.97739 0.97328 1.21500 0.99272 0.96122 1.00012 1.21394 0.97941 0.99256 0.91278 1.20769 0.96188 0.98698 1.01530 1.20547 0.99940 0.90354 1.10429 0.91612 0.97495 0.97574 0.85754 0.81385 0.82234 0.86986 0.84418 0.82867 0.81779 0.83637 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.69 13.29 21.45 0.28 -53.41 16 2 C 0.01 0.83 5.46 84.65 0.46 1.29 16 3 Si 0.99 43.38 29.54 68.60 2.03 45.41 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.56 -33.00 9.43 25.60 0.24 -32.76 16 8 H 0.06 3.76 7.81 -2.91 -0.02 3.74 16 9 C 0.21 11.72 4.49 71.24 0.32 12.04 16 10 O -0.34 -17.33 10.12 -92.44 -0.94 -18.26 16 11 C 0.13 5.66 6.68 22.49 0.15 5.81 16 12 C -0.22 -8.44 9.04 22.39 0.20 -8.23 16 13 C -0.05 -1.42 10.04 22.24 0.22 -1.20 16 14 C -0.16 -4.54 9.98 22.39 0.22 -4.32 16 15 C 0.12 3.93 4.72 22.51 0.11 4.04 16 16 O -0.26 -8.08 10.00 -35.44 -0.35 -8.44 16 17 C 0.10 2.67 6.54 22.52 0.15 2.82 16 18 C -0.21 -5.90 8.80 22.37 0.20 -5.71 16 19 C -0.09 -2.11 10.04 22.25 0.22 -1.89 16 20 C -0.15 -2.66 10.04 22.29 0.22 -2.44 16 21 C -0.08 -1.36 10.04 22.26 0.22 -1.14 16 22 C -0.15 -3.32 9.99 22.37 0.22 -3.10 16 23 C -0.19 -7.32 8.30 22.46 0.19 -7.13 16 24 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 25 H 0.01 0.41 7.66 -2.39 -0.02 0.40 16 26 H 0.01 0.37 7.66 -2.39 -0.02 0.35 16 27 H 0.12 5.02 6.29 -2.91 -0.02 5.01 16 28 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.11 3.55 6.19 -2.91 -0.02 3.53 16 31 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -66.88 308.18 5.47 -61.42 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.09 Total: 15.19 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 3.35 Total: -41.91 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.28 Total: -53.41 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.29 Total: -26.70 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.88 5.47 -61.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121602423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.687 kcal (2) G-P(sol) polarization free energy of solvation -66.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds