Wall clock time and date at job start Mon Mar 30 2020 01:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35608 * 116.99882 * 2 1 4 4 C 1.38513 * 120.08622 * 0.02562 * 3 2 1 5 5 C 1.38025 * 120.31191 * 179.97438 * 4 3 2 6 6 C 1.39957 * 120.46740 * 0.30222 * 5 4 3 7 7 C 1.48353 * 119.91841 * 179.72017 * 6 5 4 8 8 C 1.39392 * 120.06175 * 179.72502 * 7 6 5 9 9 C 1.37902 * 119.92808 * 179.74564 * 8 7 6 10 10 C 1.38837 * 120.06965 * 0.55463 * 9 8 7 11 11 O 1.35872 * 119.93321 * 179.72333 * 10 9 8 12 12 C 1.38834 * 120.12934 * 359.69651 * 10 9 8 13 13 C 1.37899 * 120.06840 * 0.02562 * 12 10 9 14 14 C 1.38624 * 120.15259 * 359.44173 * 6 5 4 15 15 C 1.40512 * 119.69146 * 0.52713 * 14 6 5 16 16 C 1.41185 * 120.22921 * 179.72111 * 15 14 6 17 17 H 1.07994 * 120.00004 * 204.73292 * 16 15 14 18 18 C 1.39900 * 119.99854 * 24.73985 * 16 15 14 19 19 N 1.30881 * 120.00057 * 17.74656 * 18 16 15 20 20 Si 1.86798 * 120.00217 * 197.75017 * 18 16 15 21 21 H 1.48504 * 109.47249 * 59.99592 * 20 18 16 22 22 H 1.48500 * 109.47373 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46895 * 299.99609 * 20 18 16 24 24 H 1.08995 * 109.47194 * 59.99916 * 1 2 3 25 25 H 1.09002 * 109.46819 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46522 * 299.99889 * 1 2 3 27 27 H 1.07999 * 119.84173 * 359.97438 * 4 3 2 28 28 H 1.07993 * 119.76613 * 180.02562 * 5 4 3 29 29 H 1.08000 * 120.03203 * 0.02562 * 8 7 6 30 30 H 1.08005 * 119.96868 * 180.27124 * 9 8 7 31 31 H 0.96703 * 113.99905 * 269.96907 * 11 10 9 32 32 H 1.07997 * 119.96175 * 180.02562 * 12 10 9 33 33 H 1.08000 * 120.03750 * 180.02562 * 13 12 10 34 34 H 1.07999 * 120.14726 * 180.27392 * 14 6 5 35 35 H 0.96995 * 120.00286 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2920 2.3711 0.0005 5 6 1.9138 3.6034 0.0011 6 6 3.3104 3.6935 -0.0053 7 6 3.9659 5.0244 -0.0109 8 6 5.3567 5.1177 -0.0115 9 6 5.9632 6.3562 -0.0220 10 6 5.1901 7.5094 -0.0204 11 8 5.7905 8.7282 -0.0251 12 6 3.8046 7.4195 -0.0146 13 6 3.1924 6.1839 -0.0098 14 6 4.0826 2.5423 -0.0005 15 6 3.4565 1.2843 -0.0005 16 6 4.2319 0.1045 -0.0016 17 1 3.8182 -0.8132 -0.3929 18 6 5.5360 0.1240 0.5044 19 7 5.9219 1.1041 1.2813 20 14 6.7267 -1.2485 0.0711 21 1 6.9138 -1.2951 -1.4013 22 1 8.0342 -0.9953 0.7280 23 1 6.1788 -2.5460 0.5418 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 0.2136 2.3132 0.0005 28 1 1.3183 4.5043 0.0019 29 1 5.9586 4.2210 -0.0082 30 1 7.0407 6.4292 -0.0269 31 1 5.9679 9.0827 0.8569 32 1 3.2059 8.3183 -0.0138 33 1 2.1146 6.1146 -0.0057 34 1 5.1603 2.6120 -0.0009 35 1 6.8262 1.1179 1.6318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138537701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:48 Heat of formation + Delta-G solvation = -39.543905 kcal Electronic energy + Delta-G solvation = -19572.184692 eV Core-core repulsion = 16500.211945 eV Total energy + Delta-G solvation = -3071.972747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.43085 -38.61064 -36.92574 -35.57726 -33.69782 -30.77832 -30.72249 -29.69507 -27.34924 -26.36874 -25.19565 -22.54819 -22.31447 -20.60705 -19.85160 -18.18677 -17.50699 -16.59238 -15.81498 -15.41724 -15.07916 -14.82845 -14.68942 -14.37480 -13.80882 -13.37865 -13.16298 -12.75998 -12.42667 -12.31381 -11.92744 -11.70777 -11.59314 -11.26721 -11.20092 -10.92909 -10.84449 -10.53096 -10.18712 -10.08920 -9.87801 -9.40975 -9.20813 -8.60927 -8.36604 -7.56515 -6.86165 -6.59819 -4.29361 1.39977 1.78008 2.73437 2.92000 3.07600 3.10754 3.18901 3.94216 4.10350 4.44564 4.49852 4.69213 5.26068 5.29495 5.52251 5.55168 5.71653 5.78859 5.79738 5.92268 5.94929 6.06665 6.14605 6.28947 6.41263 6.70520 6.76344 6.78333 6.88040 7.08772 7.16789 7.30359 7.34060 7.59966 7.65007 7.88341 7.93842 8.12520 8.31931 8.63367 8.79159 8.99331 10.17576 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.015692 B = 0.006209 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.928283 B = 4508.746058 C = 6202.943100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.022 3.978 4 C -0.180 4.180 5 C -0.191 4.191 6 C -0.075 4.075 7 C -0.010 4.010 8 C -0.101 4.101 9 C -0.141 4.141 10 C 0.073 3.927 11 O -0.503 6.503 12 C -0.144 4.144 13 C -0.112 4.112 14 C -0.124 4.124 15 C 0.093 3.907 16 C -0.445 4.445 17 H 0.083 0.917 18 C 0.074 3.926 19 N -0.798 5.798 20 Si 0.909 3.091 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.040 0.960 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.381 0.619 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 6.382 -0.160 6.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C -0.023 4.023 4 C -0.199 4.199 5 C -0.210 4.210 6 C -0.075 4.075 7 C -0.010 4.010 8 C -0.119 4.119 9 C -0.159 4.159 10 C 0.029 3.971 11 O -0.313 6.313 12 C -0.163 4.163 13 C -0.130 4.130 14 C -0.143 4.143 15 C 0.091 3.909 16 C -0.475 4.475 17 H 0.101 0.899 18 C -0.143 4.143 19 N -0.424 5.424 20 Si 0.734 3.266 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.190 1.190 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.153 0.847 30 H 0.140 0.860 31 H 0.236 0.764 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.898 6.198 -0.626 6.513 hybrid contribution 0.257 -0.282 0.484 0.616 sum -1.641 5.916 -0.142 6.141 Atomic orbital electron populations 1.22754 0.81630 1.01830 0.99990 1.85964 1.18322 1.28265 1.89964 1.19359 0.92408 0.82648 1.07847 1.20546 0.97507 0.92730 1.09114 1.20173 0.93029 0.95439 1.12386 1.18412 0.92888 0.90864 1.05368 1.19135 0.92753 0.93212 0.95869 1.21319 0.94503 0.97297 0.98818 1.21288 0.99866 0.92047 1.02722 1.18433 0.90503 0.84270 1.03905 1.84813 1.81022 1.32332 1.33102 1.21213 0.93797 0.97943 1.03299 1.21127 0.99998 0.91172 1.00722 1.21264 0.99608 0.89640 1.03829 1.16972 0.87310 0.93939 0.92704 1.19379 0.96574 0.96560 1.34947 0.89898 1.25882 0.98840 0.96954 0.92642 1.69819 1.19201 1.30910 1.22445 0.86345 0.78870 0.81482 0.79945 1.18828 1.20381 1.18984 0.94156 0.89962 0.94068 0.88321 0.88653 0.84727 0.86007 0.76430 0.86177 0.85639 0.84996 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -7.09 9.76 -18.52 -0.18 -7.27 16 3 C 0.02 0.54 6.72 -38.28 -0.26 0.28 16 4 C -0.18 -3.95 9.01 -39.56 -0.36 -4.31 16 5 C -0.19 -4.13 9.42 -39.02 -0.37 -4.49 16 6 C -0.07 -1.71 5.87 -104.95 -0.62 -2.32 16 7 C -0.01 -0.19 5.88 -104.88 -0.62 -0.81 16 8 C -0.10 -1.91 9.41 -39.28 -0.37 -2.28 16 9 C -0.14 -2.32 9.97 -39.48 -0.39 -2.71 16 10 C 0.07 1.14 6.71 -39.14 -0.26 0.88 16 11 O -0.50 -6.75 13.50 -19.34 -0.26 -7.01 16 12 C -0.14 -2.23 9.97 -39.48 -0.39 -2.63 16 13 C -0.11 -1.94 9.42 -39.28 -0.37 -2.31 16 14 C -0.12 -3.11 8.06 -38.58 -0.31 -3.42 16 15 C 0.09 2.47 5.58 -106.73 -0.60 1.87 16 16 C -0.45 -11.79 8.71 -37.84 -0.33 -12.12 16 17 H 0.08 2.19 7.64 -52.49 -0.40 1.79 16 18 C 0.07 1.82 5.14 -17.33 -0.09 1.73 16 19 N -0.80 -20.00 10.97 55.55 0.61 -19.39 16 20 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.04 0.64 7.65 -51.93 -0.40 0.25 16 27 H 0.10 1.87 6.27 -52.49 -0.33 1.54 16 28 H 0.10 1.79 6.17 -52.49 -0.32 1.47 16 29 H 0.13 2.63 6.18 -52.49 -0.32 2.30 16 30 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 31 H 0.38 3.20 9.06 45.56 0.41 3.61 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.13 1.98 6.17 -52.49 -0.32 1.66 16 34 H 0.13 3.33 4.28 -52.49 -0.22 3.10 16 35 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 LS Contribution 298.46 15.07 4.50 4.50 Total: -1.00 -29.16 298.46 -7.41 -36.58 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -2.71 Total: 10.09 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -4.34 Total: -31.08 kcal Atomic # 7 Polarization: -20.00 SS G_CDS: 0.61 Total: -19.39 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.44 Total: -14.28 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.16 -7.41 -36.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138537701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.965 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds