Wall clock time and date at job start Mon Mar 30 2020 01:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35608 * 116.99882 * 2 1 4 4 C 1.38513 * 120.08622 * 0.02562 * 3 2 1 5 5 C 1.38025 * 120.31191 * 179.97438 * 4 3 2 6 6 C 1.39957 * 120.46740 * 0.30222 * 5 4 3 7 7 C 1.48353 * 119.91841 * 179.72017 * 6 5 4 8 8 C 1.39392 * 120.06175 * 179.72502 * 7 6 5 9 9 C 1.37902 * 119.92808 * 179.74564 * 8 7 6 10 10 C 1.38837 * 120.06965 * 0.55463 * 9 8 7 11 11 O 1.35872 * 119.93321 * 179.72333 * 10 9 8 12 12 C 1.38834 * 120.12934 * 359.69651 * 10 9 8 13 13 C 1.37899 * 120.06840 * 0.02562 * 12 10 9 14 14 C 1.38624 * 120.15259 * 359.44173 * 6 5 4 15 15 C 1.40512 * 119.69146 * 0.52713 * 14 6 5 16 16 C 1.41185 * 120.22921 * 179.72111 * 15 14 6 17 17 H 1.07994 * 120.00004 * 204.73292 * 16 15 14 18 18 C 1.39900 * 119.99854 * 24.73985 * 16 15 14 19 19 N 1.30881 * 120.00057 * 17.74656 * 18 16 15 20 20 Si 1.86798 * 120.00217 * 197.75017 * 18 16 15 21 21 H 1.48504 * 109.47249 * 59.99592 * 20 18 16 22 22 H 1.48500 * 109.47373 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46895 * 299.99609 * 20 18 16 24 24 H 1.08995 * 109.47194 * 59.99916 * 1 2 3 25 25 H 1.09002 * 109.46819 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46522 * 299.99889 * 1 2 3 27 27 H 1.07999 * 119.84173 * 359.97438 * 4 3 2 28 28 H 1.07993 * 119.76613 * 180.02562 * 5 4 3 29 29 H 1.08000 * 120.03203 * 0.02562 * 8 7 6 30 30 H 1.08005 * 119.96868 * 180.27124 * 9 8 7 31 31 H 0.96703 * 113.99905 * 269.96907 * 11 10 9 32 32 H 1.07997 * 119.96175 * 180.02562 * 12 10 9 33 33 H 1.08000 * 120.03750 * 180.02562 * 13 12 10 34 34 H 1.07999 * 120.14726 * 180.27392 * 14 6 5 35 35 H 0.96995 * 120.00286 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2920 2.3711 0.0005 5 6 1.9138 3.6034 0.0011 6 6 3.3104 3.6935 -0.0053 7 6 3.9659 5.0244 -0.0109 8 6 5.3567 5.1177 -0.0115 9 6 5.9632 6.3562 -0.0220 10 6 5.1901 7.5094 -0.0204 11 8 5.7905 8.7282 -0.0251 12 6 3.8046 7.4195 -0.0146 13 6 3.1924 6.1839 -0.0098 14 6 4.0826 2.5423 -0.0005 15 6 3.4565 1.2843 -0.0005 16 6 4.2319 0.1045 -0.0016 17 1 3.8182 -0.8132 -0.3929 18 6 5.5360 0.1240 0.5044 19 7 5.9219 1.1041 1.2813 20 14 6.7267 -1.2485 0.0711 21 1 6.9138 -1.2951 -1.4013 22 1 8.0342 -0.9953 0.7280 23 1 6.1788 -2.5460 0.5418 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 0.2136 2.3132 0.0005 28 1 1.3183 4.5043 0.0019 29 1 5.9586 4.2210 -0.0082 30 1 7.0407 6.4292 -0.0269 31 1 5.9679 9.0827 0.8569 32 1 3.2059 8.3183 -0.0138 33 1 2.1146 6.1146 -0.0057 34 1 5.1603 2.6120 -0.0009 35 1 6.8262 1.1179 1.6318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138537701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:48 Heat of formation + Delta-G solvation = -57.288932 kcal Electronic energy + Delta-G solvation = -19572.954175 eV Core-core repulsion = 16500.211945 eV Total energy + Delta-G solvation = -3072.742230 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84761 -40.17325 -38.34623 -37.07051 -35.48128 -32.31543 -32.14613 -31.37296 -28.83736 -27.91542 -26.93277 -24.00767 -23.75975 -22.26681 -21.43456 -19.46850 -19.17804 -18.27931 -17.39355 -16.88367 -16.56072 -16.25637 -16.20809 -15.85447 -15.17507 -15.00055 -14.64933 -14.25611 -14.08964 -13.81335 -13.44780 -13.25098 -12.99757 -12.83502 -12.80096 -12.57406 -12.37303 -12.11646 -11.70999 -11.62990 -11.44042 -11.06229 -10.99473 -9.91801 -9.82895 -9.40564 -8.65891 -8.27862 -6.21788 -0.02051 0.46421 0.97155 1.25138 1.38176 1.48757 1.54377 2.23186 2.61078 2.91021 2.96654 3.36181 3.73500 3.95583 4.02767 4.09139 4.36630 4.39654 4.47535 4.49907 4.60603 4.62795 4.75026 4.90583 5.07810 5.09287 5.19412 5.30496 5.38655 5.46403 5.51880 5.69965 5.82085 5.84226 5.97555 6.18787 6.31968 6.49580 6.79505 6.91221 6.92182 7.22154 8.37274 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.015692 B = 0.006209 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.928283 B = 4508.746058 C = 6202.943100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.340 6.340 3 C 0.005 3.995 4 C -0.181 4.181 5 C -0.187 4.187 6 C -0.081 4.081 7 C -0.045 4.045 8 C -0.115 4.115 9 C -0.146 4.146 10 C 0.090 3.910 11 O -0.505 6.505 12 C -0.140 4.140 13 C -0.107 4.107 14 C -0.148 4.148 15 C 0.054 3.946 16 C -0.485 4.485 17 H 0.068 0.932 18 C 0.036 3.964 19 N -0.826 5.826 20 Si 0.977 3.023 21 H -0.263 1.263 22 H -0.265 1.265 23 H -0.263 1.263 24 H 0.054 0.946 25 H 0.111 0.889 26 H 0.051 0.949 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.113 0.887 30 H 0.139 0.861 31 H 0.408 0.592 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.997 8.595 -0.190 9.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.255 6.255 3 C -0.040 4.040 4 C -0.200 4.200 5 C -0.206 4.206 6 C -0.081 4.081 7 C -0.045 4.045 8 C -0.133 4.133 9 C -0.164 4.164 10 C 0.046 3.954 11 O -0.318 6.318 12 C -0.158 4.158 13 C -0.124 4.124 14 C -0.168 4.168 15 C 0.052 3.948 16 C -0.515 4.515 17 H 0.086 0.914 18 C -0.178 4.178 19 N -0.453 5.453 20 Si 0.798 3.202 21 H -0.187 1.187 22 H -0.189 1.189 23 H -0.188 1.188 24 H 0.073 0.927 25 H 0.129 0.871 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.131 0.869 30 H 0.157 0.843 31 H 0.267 0.733 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.136 0.864 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.748 8.433 -0.637 8.893 hybrid contribution 0.417 -0.735 0.502 0.983 sum -2.331 7.699 -0.135 8.045 Atomic orbital electron populations 1.23108 0.78516 1.04246 1.01099 1.85907 1.21627 1.27961 1.90004 1.19554 0.92292 0.84091 1.08065 1.20915 0.99140 0.91984 1.07975 1.20635 0.92885 0.96704 1.10372 1.18753 0.93661 0.91668 1.04039 1.19130 0.93354 0.92883 0.99135 1.21238 0.94374 0.97731 0.99942 1.21447 1.00977 0.91482 1.02523 1.18497 0.90705 0.84705 1.01516 1.84748 1.80695 1.30925 1.35411 1.21523 0.94022 0.98355 1.01904 1.21291 1.00667 0.90787 0.99699 1.21248 0.99383 0.90433 1.05703 1.17392 0.88938 0.94511 0.93945 1.19472 0.98292 0.96401 1.37332 0.91355 1.26624 0.99775 0.99389 0.92005 1.69871 1.19802 1.32500 1.23127 0.85336 0.76961 0.78344 0.79572 1.18709 1.18920 1.18783 0.92715 0.87114 0.92996 0.84992 0.85209 0.86920 0.84291 0.73312 0.82848 0.83980 0.86397 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.81 113.37 1.11 1.92 16 2 O -0.34 -15.83 9.76 -89.19 -0.87 -16.70 16 3 C 0.00 0.23 6.72 23.11 0.16 0.39 16 4 C -0.18 -7.83 9.01 22.28 0.20 -7.63 16 5 C -0.19 -7.89 9.42 22.64 0.21 -7.67 16 6 C -0.08 -3.75 5.87 -20.08 -0.12 -3.87 16 7 C -0.04 -1.79 5.88 -20.03 -0.12 -1.91 16 8 C -0.11 -4.41 9.41 22.47 0.21 -4.20 16 9 C -0.15 -4.61 9.97 22.33 0.22 -4.38 16 10 C 0.09 2.53 6.71 22.56 0.15 2.68 16 11 O -0.50 -11.41 13.50 -92.11 -1.24 -12.65 16 12 C -0.14 -3.80 9.97 22.33 0.22 -3.58 16 13 C -0.11 -3.42 9.42 22.47 0.21 -3.20 16 14 C -0.15 -7.85 8.06 22.92 0.18 -7.67 16 15 C 0.05 3.04 5.58 -21.23 -0.12 2.92 16 16 C -0.49 -27.37 8.71 23.40 0.20 -27.16 16 17 H 0.07 3.87 7.64 -2.91 -0.02 3.85 16 18 C 0.04 1.87 5.14 85.24 0.44 2.30 16 19 N -0.83 -43.67 10.97 21.82 0.24 -43.43 16 20 Si 0.98 39.70 29.59 68.60 2.03 41.73 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 24 H 0.05 1.57 7.66 -2.39 -0.02 1.56 16 25 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 26 H 0.05 1.53 7.65 -2.39 -0.02 1.51 16 27 H 0.13 4.67 6.27 -2.91 -0.02 4.65 16 28 H 0.13 4.47 6.17 -2.91 -0.02 4.46 16 29 H 0.11 4.74 6.18 -2.91 -0.02 4.72 16 30 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 31 H 0.41 4.97 9.06 -74.05 -0.67 4.30 16 32 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.14 3.97 6.17 -2.91 -0.02 3.96 16 34 H 0.12 6.43 4.28 -2.91 -0.01 6.42 16 35 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 Total: -1.00 -66.70 298.46 3.80 -62.90 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.47 Total: 29.22 kcal Atomic # 6 Polarization: -64.24 SS G_CDS: 3.17 Total: -61.07 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.24 Total: -43.43 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -2.11 Total: -29.35 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -66.70 3.80 -62.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138537701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.607 kcal (2) G-P(sol) polarization free energy of solvation -66.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds