Wall clock time and date at job start Mon Mar 30 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48497 * 109.47432 * 275.37750 * 3 2 1 5 5 H 1.48502 * 109.46940 * 35.37689 * 3 2 1 6 6 H 1.48500 * 109.47154 * 155.37408 * 3 2 1 7 7 C 1.38810 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99568 * 336.03546 * 7 2 1 9 9 N 1.36930 * 120.00215 * 156.02972 * 7 2 1 10 10 C 1.46505 * 120.00235 * 322.08011 * 9 7 2 11 11 N 1.46497 * 109.47158 * 270.00472 * 10 9 7 12 12 C 1.44541 * 120.61753 * 89.99939 * 11 10 9 13 13 C 1.53434 * 111.71680 * 179.97438 * 12 11 10 14 14 S 1.82075 * 103.93590 * 359.97438 * 13 12 11 15 15 C 1.33007 * 120.61004 * 269.71460 * 11 10 9 16 16 O 1.21621 * 125.20136 * 359.97438 * 15 11 10 17 17 C 1.46500 * 120.00356 * 142.07981 * 9 7 2 18 18 C 1.54274 * 110.02706 * 62.27226 * 17 9 7 19 19 C 1.54972 * 104.15626 * 217.13876 * 18 17 9 20 20 C 1.54892 * 102.77957 * 37.88828 * 19 18 17 21 21 C 1.53876 * 110.03181 * 305.05945 * 17 9 7 22 22 H 0.97001 * 120.00158 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.46738 * 30.00035 * 10 9 7 24 24 H 1.08998 * 109.47439 * 149.99817 * 10 9 7 25 25 H 1.08998 * 109.03646 * 300.56297 * 12 11 10 26 26 H 1.08999 * 109.04281 * 59.50108 * 12 11 10 27 27 H 1.08991 * 110.53499 * 118.60849 * 13 12 11 28 28 H 1.08998 * 110.52877 * 241.24368 * 13 12 11 29 29 H 1.08996 * 110.01796 * 183.65927 * 17 9 7 30 30 H 1.08994 * 110.48835 * 335.78434 * 18 17 9 31 31 H 1.08997 * 110.48704 * 98.43448 * 18 17 9 32 32 H 1.08998 * 110.71773 * 279.57483 * 19 18 17 33 33 H 1.09001 * 110.91902 * 156.29648 * 19 18 17 34 34 H 1.08995 * 110.48777 * 203.40714 * 20 19 18 35 35 H 1.08997 * 110.59776 * 80.81386 * 20 19 18 36 36 H 1.09003 * 110.02666 * 238.56863 * 21 17 9 37 37 H 1.09002 * 110.03127 * 359.97438 * 21 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3840 2.1121 -1.3939 5 1 1.5090 2.6172 0.8106 6 1 3.5999 1.4101 0.5834 7 6 2.0103 -1.2021 -0.0005 8 1 1.5401 -2.0972 0.3790 9 7 3.2910 -1.2530 -0.4823 10 6 3.6645 -0.4589 -1.6555 11 7 3.4373 -1.2457 -2.8702 12 6 2.1627 -1.1983 -3.5503 13 6 2.1492 -2.0964 -4.7942 14 16 3.8167 -2.8269 -4.8258 15 6 4.4019 -2.0125 -3.3708 16 8 5.5160 -2.1352 -2.8987 17 6 4.2879 -2.1015 0.1753 18 6 3.8574 -3.5808 0.0962 19 6 4.2967 -4.1768 1.4576 20 6 3.9974 -3.0246 2.4486 21 6 4.3772 -1.7480 1.6702 22 1 -0.4850 0.8400 -0.0004 23 1 3.0577 0.4459 -1.6899 24 1 4.7181 -0.1875 -1.5901 25 1 1.3817 -1.5280 -2.8652 26 1 1.9592 -0.1712 -3.8532 27 1 1.3924 -2.8746 -4.6958 28 1 1.9724 -1.5037 -5.6917 29 1 5.2607 -1.9699 -0.2984 30 1 2.7767 -3.6578 -0.0228 31 1 4.3693 -4.0838 -0.7242 32 1 5.3608 -4.4129 1.4498 33 1 3.7082 -5.0606 1.7037 34 1 4.6112 -3.1223 3.3439 35 1 2.9398 -3.0103 2.7119 36 1 5.3937 -1.4455 1.9222 37 1 3.6792 -0.9448 1.9063 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153407865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:21 Heat of formation + Delta-G solvation = -9.050442 kcal Electronic energy + Delta-G solvation = -20079.248985 eV Core-core repulsion = 17176.335236 eV Total energy + Delta-G solvation = -2902.913749 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.48031 -37.71690 -36.17738 -34.15755 -31.76136 -30.20468 -27.94367 -27.32579 -25.94140 -24.26986 -22.61798 -20.52520 -20.01357 -19.03313 -17.65670 -17.07139 -16.25980 -15.61515 -15.41385 -15.21306 -14.39987 -14.10672 -13.82063 -13.71671 -13.34433 -12.90270 -12.73143 -12.51960 -12.37880 -11.90873 -11.45550 -11.22914 -10.88662 -10.65104 -10.58464 -10.46945 -10.39324 -10.27828 -10.03134 -9.78899 -9.71128 -9.39395 -8.78470 -8.60300 -7.89175 -7.14914 -6.25317 -3.66615 1.57932 2.18655 2.74814 3.07847 3.30140 3.34354 3.72786 4.27192 4.63047 4.75932 4.97685 5.05998 5.34784 5.38788 5.52072 5.59756 5.72109 5.79527 6.03182 6.08192 6.15950 6.21844 6.24523 6.32349 6.42460 6.51133 6.53589 6.71394 6.73062 6.95168 7.06682 7.11603 7.52678 7.80850 8.14246 8.22898 8.74512 9.44745 9.85685 10.88782 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014991 B = 0.010125 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.330596 B = 2764.785428 C = 3878.136949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.044 3.956 3 Si 0.856 3.144 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.267 4.267 8 H 0.085 0.915 9 N -0.579 5.579 10 C 0.340 3.660 11 N -0.598 5.598 12 C 0.096 3.904 13 C -0.086 4.086 14 S -0.238 6.238 15 C 0.553 3.447 16 O -0.503 6.503 17 C 0.166 3.834 18 C -0.129 4.129 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.131 4.131 22 H 0.266 0.734 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -2.419 -4.496 6.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.158 4.158 3 Si 0.685 3.315 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.187 1.187 7 C -0.396 4.396 8 H 0.102 0.898 9 N -0.300 5.300 10 C 0.130 3.870 11 N -0.338 5.338 12 C -0.029 4.029 13 C -0.235 4.235 14 S -0.015 6.015 15 C 0.230 3.770 16 O -0.382 6.382 17 C 0.060 3.940 18 C -0.168 4.168 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.170 4.170 22 H 0.076 0.924 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.124 0.876 26 H 0.096 0.904 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.613 -3.120 -4.909 7.423 hybrid contribution -0.338 1.764 0.696 1.927 sum 4.275 -1.355 -4.213 6.153 Atomic orbital electron populations 1.69870 1.05903 1.27037 1.49656 1.25470 0.95026 0.97377 0.97933 0.87242 0.81497 0.85381 0.77381 1.21304 1.22197 1.18717 1.18699 0.87217 0.94775 1.38883 0.89756 1.44959 1.09247 1.50468 1.25293 1.21929 0.99005 0.90010 0.76006 1.49892 1.11338 1.44748 1.27783 1.21481 0.87956 1.00187 0.93301 1.24149 0.95757 1.02077 1.01538 1.87094 1.15354 1.61576 1.37504 1.21790 0.87183 0.81575 0.86438 1.90779 1.19937 1.64734 1.62759 1.21229 0.91342 0.89802 0.91622 1.22740 1.01938 0.96655 0.95511 1.22432 0.99866 0.97456 0.96246 1.22237 1.01041 0.95125 0.96969 1.22491 1.00055 0.98437 0.96005 0.92366 0.90224 0.90922 0.87582 0.90389 0.87161 0.87473 0.91981 0.90679 0.93271 0.92557 0.92628 0.93153 0.91614 0.93525 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.88 13.97 55.49 0.78 -23.10 16 2 C 0.04 1.11 5.27 -17.43 -0.09 1.02 16 3 Si 0.86 19.61 25.19 -169.99 -4.28 15.33 16 4 H -0.28 -6.28 6.65 56.52 0.38 -5.90 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.27 -6.52 8.21 -15.06 -0.12 -6.64 16 8 H 0.08 2.29 7.07 -52.49 -0.37 1.92 16 9 N -0.58 -12.65 2.26 -168.07 -0.38 -13.03 16 10 C 0.34 7.05 4.94 -63.75 -0.31 6.73 16 11 N -0.60 -11.32 3.02 -183.00 -0.55 -11.87 16 12 C 0.10 1.54 6.80 -4.86 -0.03 1.51 16 13 C -0.09 -1.11 7.42 37.38 0.28 -0.83 16 14 S -0.24 -3.88 23.25 -107.50 -2.50 -6.38 16 15 C 0.55 10.83 8.27 53.27 0.44 11.27 16 16 O -0.50 -11.10 16.84 5.26 0.09 -11.01 16 17 C 0.17 3.35 3.42 -66.81 -0.23 3.13 16 18 C -0.13 -2.47 6.43 -25.02 -0.16 -2.63 16 19 C -0.12 -1.99 6.91 -24.69 -0.17 -2.16 16 20 C -0.12 -1.94 6.83 -25.07 -0.17 -2.11 16 21 C -0.13 -2.47 6.25 -25.61 -0.16 -2.63 16 22 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 23 H 0.08 1.71 3.38 -51.93 -0.18 1.53 16 24 H 0.07 1.49 7.41 -51.93 -0.38 1.11 16 25 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.29 7.38 -51.93 -0.38 0.91 16 30 H 0.07 1.58 6.63 -51.93 -0.34 1.24 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.71 7.18 -51.93 -0.37 1.34 16 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -27.34 304.90 -8.41 -35.75 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.42 Total: 3.07 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -0.74 Total: 6.66 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.16 Total: -48.01 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.28 Total: 15.33 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -2.50 Total: -6.38 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.34 -8.41 -35.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153407865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.700 kcal (2) G-P(sol) polarization free energy of solvation -27.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds